100+ datasets found
  1. o

    COVID-19 Genome Sequence Dataset

    • registry.opendata.aws
    • catalog.midasnetwork.us
    Updated Jul 9, 2020
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    National Library of Medicine (NLM) (2020). COVID-19 Genome Sequence Dataset [Dataset]. https://registry.opendata.aws/ncbi-covid-19/
    Explore at:
    Dataset updated
    Jul 9, 2020
    Dataset provided by
    <a href="http://nlm.nih.gov/">National Library of Medicine (NLM)</a>
    Description

    This repository within the ACTIV TRACE initiative houses a comprehensive collection of datasets related to SARS-CoV-2. The processing of SARS-CoV-2 Sequence Read Archive (SRA) files has been optimized to identify genetic variations in viral samples. This information is then presented in the Variant Call Format (VCF). Each VCF file corresponds to the SRA parent-run's accession ID. Additionally, the data is available in the parquet format, making it easier to search and filter using the Amazon Athena Service. The SARS-CoV-2 Variant Calling Pipeline is designed to handle new data every six hours, with updates to the AWS ODP bucket occurring daily.

  2. COVID-19 Case Surveillance Restricted Access Detailed Data

    • data.cdc.gov
    • data.virginia.gov
    • +3more
    application/rdfxml +5
    Updated Nov 20, 2020
    + more versions
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    CDC Data, Analytics and Visualization Task Force (2020). COVID-19 Case Surveillance Restricted Access Detailed Data [Dataset]. https://data.cdc.gov/Case-Surveillance/COVID-19-Case-Surveillance-Restricted-Access-Detai/mbd7-r32t
    Explore at:
    application/rssxml, xml, json, csv, tsv, application/rdfxmlAvailable download formats
    Dataset updated
    Nov 20, 2020
    Dataset provided by
    Centers for Disease Control and Preventionhttp://www.cdc.gov/
    Authors
    CDC Data, Analytics and Visualization Task Force
    License

    https://www.usa.gov/government-workshttps://www.usa.gov/government-works

    Description

    Note: Reporting of new COVID-19 Case Surveillance data will be discontinued July 1, 2024, to align with the process of removing SARS-CoV-2 infections (COVID-19 cases) from the list of nationally notifiable diseases. Although these data will continue to be publicly available, the dataset will no longer be updated.

    Authorizations to collect certain public health data expired at the end of the U.S. public health emergency declaration on May 11, 2023. The following jurisdictions discontinued COVID-19 case notifications to CDC: Iowa (11/8/21), Kansas (5/12/23), Kentucky (1/1/24), Louisiana (10/31/23), New Hampshire (5/23/23), and Oklahoma (5/2/23). Please note that these jurisdictions will not routinely send new case data after the dates indicated. As of 7/13/23, case notifications from Oregon will only include pediatric cases resulting in death.

    This case surveillance publicly available dataset has 33 elements for all COVID-19 cases shared with CDC and includes demographics, geography (county and state of residence), any exposure history, disease severity indicators and outcomes, and presence of any underlying medical conditions and risk behaviors. This dataset requires a registration process and a data use agreement.

    CDC has three COVID-19 case surveillance datasets:

    Requesting Access to the COVID-19 Case Surveillance Restricted Access Detailed Data Please review the following documents to determine your interest in accessing the COVID-19 Case Surveillance Restricted Access Detailed Data file: 1) CDC COVID-19 Case Surveillance Restricted Access Detailed Data: Summary, Guidance, Limitations Information, and Restricted Access Data Use Agreement Information 2) Data Dictionary for the COVID-19 Case Surveillance Restricted Access Detailed Data The next step is to complete the Registration Information and Data Use Restrictions Agreement (RIDURA). Once complete, CDC will review your agreement. After access is granted, Ask SRRG (eocevent394@cdc.gov) will email you information about how to access the data through GitHub. If you have questions about obtaining access, email eocevent394@cdc.gov.

    Overview

    The COVID-19 case surveillance database includes individual-level data reported to U.S. states and autonomous reporting entities, including New York City and the District of Columbia (D.C.), as well as U.S. territories and affiliates. On April 5, 2020, COVID-19 was added to the Nationally Notifiable Condition List and classified as “immediately notifiable, urgent (within 24 hours)” by a Council of State and Territorial Epidemiologists (CSTE) Interim Position Statement (Interim-20-ID-01). CSTE updated the position statement on August 5, 2020, to clarify the interpretation of antigen detection tests and serologic test results within the case classification (Interim-20-ID-02). The statement also recommended that all states and territories enact laws to make COVID-19 reportable in their jurisdiction, and that jurisdictions conducting surveillance should submit case notifications to CDC. COVID-19 case surveillance data are collected by jurisdictions and reported voluntarily to CDC.

    COVID-19 case surveillance data are collected by jurisdictions and are shared voluntarily with CDC. For more information, visit: https://www.cdc.gov/coronavirus/2019-ncov/covid-data/about-us-cases-deaths.html.

    The deidentified data in the restricted access dataset include demographic characteristics, state and county of residence, any exposure history, disease severity indicators and outcomes, clinical data, laboratory diagnostic test results, and comorbidities.

    All data elements can be found on the COVID-19 case report form located at www.cdc.gov/coronavirus/2019-ncov/downloads/pui-form.pdf.

    COVID-19 case reports have been routinely submitted using standardized case reporting forms.

    On April 5, 2020, CSTE released an Interim Position Statement with national surveillance case definitions for COVID-19 included. Current versions of these case definitions are available here: https://ndc.services.cdc.gov/case-definitions/coronavirus-disease-2019-2021/.

    CSTE updated the position statement on August 5, 2020, to clarify the interpretation of antigen detection tests and serologic test results within the case classification. All cases reported on or after were requested to be shared by public health departments to CDC using the standardized case definitions for lab-confirmed or probable cases.

    On May 5, 2020, the standardized case reporting form was revised. Case reporting using this new form is ongoing among U.S. states and territories.

    Data are Considered Provisional

    • The COVID-19 case surveillance data are dynamic; case reports can be modified at any time by the jurisdictions sharing COVID-19 data with CDC. CDC may update prior cases shared with CDC based on any updated information from jurisdictions. For instance, as new information is gathered about previously reported cases, health departments provide updated data to CDC. As more information and data become available, analyses might find changes in surveillance data and trends during a previously reported time window. Data may also be shared late with CDC due to the volume of COVID-19 cases.
    • Annual finalized data: To create the final NNDSS data used in the annual tables, CDC works carefully with the reporting jurisdictions to reconcile the data received during the year until each state or territorial epidemiologist confirms that the data from their area are correct.

    Access Addressing Gaps in Public Health Reporting of Race and Ethnicity for COVID-19, a report from the Council of State and Territorial Epidemiologists, to better understand the challenges in completing race and ethnicity data for COVID-19 and recommendations for improvement.

    Data Limitations

    To learn more about the limitations in using case surveillance data, visit FAQ: COVID-19 Data and Surveillance.

    Data Quality Assurance Procedures

    CDC’s Case Surveillance Section routinely performs data quality assurance procedures (i.e., ongoing corrections and logic checks to address data errors). To date, the following data cleaning steps have been implemented:

    • Questions that have been left unanswered (blank) on the case report form are reclassified to a Missing value, if applicable to the question. For example, in the question "Was the individual hospitalized?" where the possible answer choices include "Yes," "No," or "Unknown," the blank value is recoded to "Missing" because the case report form did not include a response to the question.
    • Logic checks are performed for date data. If an illogical date has been provided, CDC reviews the data with the reporting jurisdiction. For example, if a symptom onset date in the future is reported to CDC, this value is set to null until the reporting jurisdiction updates the date appropriately.
    • Additional data quality processing to recode free text data is ongoing. Data on symptoms, race, ethnicity, and healthcare worker status have been prioritized.

    Data Suppression

    To prevent release of data that could be used to identify people, data cells are suppressed for low frequency (<11 COVID-19 case records with a given values). Suppression includes low frequency combinations of case month, geographic characteristics (county and state of residence), and demographic characteristics (sex, age group, race, and ethnicity). Suppressed values are re-coded to the NA answer option; records with data suppression are never removed.

    Additional COVID-19 Data

    COVID-19 data are available to the public as summary or aggregate count files, including total counts of cases and deaths by state and by county. These and other COVID-19 data are available from multiple public locations:

  3. U

    Coronavirus Corpus

    • dataverse.ucla.edu
    tar
    Updated Apr 27, 2023
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Mark Davies; Mark Davies (2023). Coronavirus Corpus [Dataset]. http://doi.org/10.25346/S6/6WMNQU
    Explore at:
    tar(678544896), tar(582323200), tar(524180480), tar(307430400), tar(650629120), tar(5953272320), tar(874071552), tar(627075584), tar(905722368), tar(850724864), tar(660690432), tar(743148544), tar(218837504), tar(73014784), tar(3919195648), tar(250127360), tar(372817920), tar(1614805504), tar(605990400), tar(274692096), tar(218329088), tar(50947072), tar(223554560), tar(529958912), tar(329620992), tar(531820032), tar(399536640), tar(769394688), tar(329752064)Available download formats
    Dataset updated
    Apr 27, 2023
    Dataset provided by
    UCLA Dataverse
    Authors
    Mark Davies; Mark Davies
    License

    https://dataverse.ucla.edu/api/datasets/:persistentId/versions/5.5/customlicense?persistentId=doi:10.25346/S6/6WMNQUhttps://dataverse.ucla.edu/api/datasets/:persistentId/versions/5.5/customlicense?persistentId=doi:10.25346/S6/6WMNQU

    Description

    The Coronavirus Corpus contains about 1.5 billion words of data in approximately 1.9 million texts from Jan 2020 - Dec 2022, and it is designed to be the definitive record of the social, cultural, and economic impact of the coronavirus (COVID-19) during this time. The corpus allows you to see the frequency of words and phrases month by month and even day by day since January 2020, such as social distancing, flatten the curve, WORK * home, Zoom, Wuhan, hoard*, toilet paper, curbside, pandemic, reopen, defy, anti-mask*. Access to material is limited to UCLA graduate students and faculty. Undergraduates please use the standard web interface for the corpora: https://www.english-corpora.org/corona/

  4. c

    The COVID Tracking Project

    • covidtracking.com
    google sheets
    + more versions
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    The COVID Tracking Project [Dataset]. https://covidtracking.com/
    Explore at:
    google sheetsAvailable download formats
    Description

    The COVID Tracking Project collects information from 50 US states, the District of Columbia, and 5 other US territories to provide the most comprehensive testing data we can collect for the novel coronavirus, SARS-CoV-2. We attempt to include positive and negative results, pending tests, and total people tested for each state or district currently reporting that data.

    Testing is a crucial part of any public health response, and sharing test data is essential to understanding this outbreak. The CDC is currently not publishing complete testing data, so we’re doing our best to collect it from each state and provide it to the public. The information is patchy and inconsistent, so we’re being transparent about what we find and how we handle it—the spreadsheet includes our live comments about changing data and how we’re working with incomplete information.

    From here, you can also learn about our methodology, see who makes this, and find out what information states provide and how we handle it.

  5. m

    COVID-19 reporting

    • mass.gov
    Updated Dec 4, 2023
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Executive Office of Health and Human Services (2023). COVID-19 reporting [Dataset]. https://www.mass.gov/info-details/covid-19-reporting
    Explore at:
    Dataset updated
    Dec 4, 2023
    Dataset provided by
    Department of Public Health
    Executive Office of Health and Human Services
    Area covered
    Massachusetts
    Description

    The COVID-19 dashboard includes data on city/town COVID-19 activity, confirmed and probable cases of COVID-19, confirmed and probable deaths related to COVID-19, and the demographic characteristics of cases and deaths.

  6. COVID-19 Case Surveillance Public Use Data

    • catalog.data.gov
    • opendatalab.com
    • +5more
    Updated Mar 3, 2022
    + more versions
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Centers for Disease Control and Prevention (2022). COVID-19 Case Surveillance Public Use Data [Dataset]. https://catalog.data.gov/dataset/covid-19-case-surveillance-public-use-data
    Explore at:
    Dataset updated
    Mar 3, 2022
    Dataset provided by
    Centers for Disease Control and Preventionhttp://www.cdc.gov/
    Description

    Beginning March 1, 2022, the "COVID-19 Case Surveillance Public Use Data" will be updated on a monthly basis. This case surveillance public use dataset has 12 elements for all COVID-19 cases shared with CDC and includes demographics, any exposure history, disease severity indicators and outcomes, presence of any underlying medical conditions and risk behaviors, and no geographic data. CDC has three COVID-19 case surveillance datasets: COVID-19 Case Surveillance Public Use Data with Geography: Public use, patient-level dataset with clinical data (including symptoms), demographics, and county and state of residence. (19 data elements) COVID-19 Case Surveillance Public Use Data: Public use, patient-level dataset with clinical and symptom data and demographics, with no geographic data. (12 data elements) COVID-19 Case Surveillance Restricted Access Detailed Data: Restricted access, patient-level dataset with clinical and symptom data, demographics, and state and county of residence. Access requires a registration process and a data use agreement. (32 data elements) The following apply to all three datasets: Data elements can be found on the COVID-19 case report form located at www.cdc.gov/coronavirus/2019-ncov/downloads/pui-form.pdf. Data are considered provisional by CDC and are subject to change until the data are reconciled and verified with the state and territorial data providers. Some data cells are suppressed to protect individual privacy. The datasets will include all cases with the earliest date available in each record (date received by CDC or date related to illness/specimen collection) at least 14 days prior to the creation of the previously updated datasets. This 14-day lag allows case reporting to be stabilized and ensures that time-dependent outcome data are accurately captured. Datasets are updated monthly. Datasets are created using CDC’s operational Policy on Public Health Research and Nonresearch Data Management and Access and include protections designed to protect individual privacy. For more information about data collection and reporting, please see https://wwwn.cdc.gov/nndss/data-collection.html For more information about the COVID-19 case surveillance data, please see https://www.cdc.gov/coronavirus/2019-ncov/covid-data/faq-surveillance.html Overview The COVID-19 case surveillance database includes individual-level data reported to U.S. states and autonomous reporting entities, including New York City and the District of Columbia (D.C.), as well as U.S. territories and affiliates. On April 5, 2020, COVID-19 was added to the Nationally Notifiable Condition List and classified as “immediately notifiable, urgent (within 24 hours)” by a Council of State and Territorial Epidemiologists (CSTE) Interim Position Statement (Interim-20-ID-01). CSTE updated the position statement on August 5, 2020 to clarify the interpretation of antigen detection tests and serologic test results within the case classification. The statement also recommended that all states and territories enact laws to make COVID-19 reportable in their jurisdiction, and that jurisdictions conducting surveillance should submit case notifications to CDC. COVID-19 case surveillance data are collected by jurisdictions and reported volun

  7. Coronavirus (COVID-19) Infection Survey: technical data

    • ons.gov.uk
    • cy.ons.gov.uk
    xlsx
    Updated Mar 10, 2023
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Office for National Statistics (2023). Coronavirus (COVID-19) Infection Survey: technical data [Dataset]. https://www.ons.gov.uk/peoplepopulationandcommunity/healthandsocialcare/conditionsanddiseases/datasets/covid19infectionsurveytechnicaldata
    Explore at:
    xlsxAvailable download formats
    Dataset updated
    Mar 10, 2023
    Dataset provided by
    Office for National Statisticshttp://www.ons.gov.uk/
    License

    Open Government Licence 3.0http://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/
    License information was derived automatically

    Description

    Technical and methodological data from the Coronavirus (COVID-19) Infection Survey, England, Wales, Northern Ireland and Scotland.

  8. d

    Johns Hopkins COVID-19 Case Tracker

    • data.world
    csv, zip
    Updated Aug 2, 2025
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    The Associated Press (2025). Johns Hopkins COVID-19 Case Tracker [Dataset]. https://data.world/associatedpress/johns-hopkins-coronavirus-case-tracker
    Explore at:
    zip, csvAvailable download formats
    Dataset updated
    Aug 2, 2025
    Authors
    The Associated Press
    Description

    Updates

    • Notice of data discontinuation: Since the start of the pandemic, AP has reported case and death counts from data provided by Johns Hopkins University. Johns Hopkins University has announced that they will stop their daily data collection efforts after March 10. As Johns Hopkins stops providing data, the AP will also stop collecting daily numbers for COVID cases and deaths. The HHS and CDC now collect and visualize key metrics for the pandemic. AP advises using those resources when reporting on the pandemic going forward.

    • April 9, 2020

      • The population estimate data for New York County, NY has been updated to include all five New York City counties (Kings County, Queens County, Bronx County, Richmond County and New York County). This has been done to match the Johns Hopkins COVID-19 data, which aggregates counts for the five New York City counties to New York County.
    • April 20, 2020

      • Johns Hopkins death totals in the US now include confirmed and probable deaths in accordance with CDC guidelines as of April 14. One significant result of this change was an increase of more than 3,700 deaths in the New York City count. This change will likely result in increases for death counts elsewhere as well. The AP does not alter the Johns Hopkins source data, so probable deaths are included in this dataset as well.
    • April 29, 2020

      • The AP is now providing timeseries data for counts of COVID-19 cases and deaths. The raw counts are provided here unaltered, along with a population column with Census ACS-5 estimates and calculated daily case and death rates per 100,000 people. Please read the updated caveats section for more information.
    • September 1st, 2020

      • Johns Hopkins is now providing counts for the five New York City counties individually.
    • February 12, 2021

      • The Ohio Department of Health recently announced that as many as 4,000 COVID-19 deaths may have been underreported through the state’s reporting system, and that the "daily reported death counts will be high for a two to three-day period."
      • Because deaths data will be anomalous for consecutive days, we have chosen to freeze Ohio's rolling average for daily deaths at the last valid measure until Johns Hopkins is able to back-distribute the data. The raw daily death counts, as reported by Johns Hopkins and including the backlogged death data, will still be present in the new_deaths column.
    • February 16, 2021

      - Johns Hopkins has reconciled Ohio's historical deaths data with the state.

      Overview

    The AP is using data collected by the Johns Hopkins University Center for Systems Science and Engineering as our source for outbreak caseloads and death counts for the United States and globally.

    The Hopkins data is available at the county level in the United States. The AP has paired this data with population figures and county rural/urban designations, and has calculated caseload and death rates per 100,000 people. Be aware that caseloads may reflect the availability of tests -- and the ability to turn around test results quickly -- rather than actual disease spread or true infection rates.

    This data is from the Hopkins dashboard that is updated regularly throughout the day. Like all organizations dealing with data, Hopkins is constantly refining and cleaning up their feed, so there may be brief moments where data does not appear correctly. At this link, you’ll find the Hopkins daily data reports, and a clean version of their feed.

    The AP is updating this dataset hourly at 45 minutes past the hour.

    To learn more about AP's data journalism capabilities for publishers, corporations and financial institutions, go here or email kromano@ap.org.

    Queries

    Use AP's queries to filter the data or to join to other datasets we've made available to help cover the coronavirus pandemic

    Interactive

    The AP has designed an interactive map to track COVID-19 cases reported by Johns Hopkins.

    @(https://datawrapper.dwcdn.net/nRyaf/15/)

    Interactive Embed Code

    <iframe title="USA counties (2018) choropleth map Mapping COVID-19 cases by county" aria-describedby="" id="datawrapper-chart-nRyaf" src="https://datawrapper.dwcdn.net/nRyaf/10/" scrolling="no" frameborder="0" style="width: 0; min-width: 100% !important;" height="400"></iframe><script type="text/javascript">(function() {'use strict';window.addEventListener('message', function(event) {if (typeof event.data['datawrapper-height'] !== 'undefined') {for (var chartId in event.data['datawrapper-height']) {var iframe = document.getElementById('datawrapper-chart-' + chartId) || document.querySelector("iframe[src*='" + chartId + "']");if (!iframe) {continue;}iframe.style.height = event.data['datawrapper-height'][chartId] + 'px';}}});})();</script>
    

    Caveats

    • This data represents the number of cases and deaths reported by each state and has been collected by Johns Hopkins from a number of sources cited on their website.
    • In some cases, deaths or cases of people who've crossed state lines -- either to receive treatment or because they became sick and couldn't return home while traveling -- are reported in a state they aren't currently in, because of state reporting rules.
    • In some states, there are a number of cases not assigned to a specific county -- for those cases, the county name is "unassigned to a single county"
    • This data should be credited to Johns Hopkins University's COVID-19 tracking project. The AP is simply making it available here for ease of use for reporters and members.
    • Caseloads may reflect the availability of tests -- and the ability to turn around test results quickly -- rather than actual disease spread or true infection rates.
    • Population estimates at the county level are drawn from 2014-18 5-year estimates from the American Community Survey.
    • The Urban/Rural classification scheme is from the Center for Disease Control and Preventions's National Center for Health Statistics. It puts each county into one of six categories -- from Large Central Metro to Non-Core -- according to population and other characteristics. More details about the classifications can be found here.

    Johns Hopkins timeseries data - Johns Hopkins pulls data regularly to update their dashboard. Once a day, around 8pm EDT, Johns Hopkins adds the counts for all areas they cover to the timeseries file. These counts are snapshots of the latest cumulative counts provided by the source on that day. This can lead to inconsistencies if a source updates their historical data for accuracy, either increasing or decreasing the latest cumulative count. - Johns Hopkins periodically edits their historical timeseries data for accuracy. They provide a file documenting all errors in their timeseries files that they have identified and fixed here

    Attribution

    This data should be credited to Johns Hopkins University COVID-19 tracking project

  9. M

    Coronavirus (Covid-19) Data in the United States

    • catalog.midasnetwork.us
    • openicpsr.org
    • +2more
    csv
    Updated Jul 15, 2024
    + more versions
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    MIDAS Coordination Center (2024). Coronavirus (Covid-19) Data in the United States [Dataset]. https://catalog.midasnetwork.us/collection/4
    Explore at:
    csvAvailable download formats
    Dataset updated
    Jul 15, 2024
    Dataset authored and provided by
    MIDAS Coordination Center
    License

    Apache License, v2.0https://www.apache.org/licenses/LICENSE-2.0
    License information was derived automatically

    Time period covered
    Jan 21, 2020 - Jan 17, 2022
    Area covered
    United States
    Variables measured
    disease, COVID-19, pathogen, case counts, Homo sapiens, host organism, mortality data, infectious disease, cumulative case count, cumulative death count, and 1 more
    Dataset funded by
    National Institute of General Medical Sciences
    Description

    Data from The New York Times, based on reports from state and local health agencies and contains cumulative cases and deaths counts of coronavirus cases in the United States, at the state and county level, over time. The data are created by compiling time series data from state and local governments and health departments. Starting from 2020-06-02, the cumulative number of cases and deaths is also be available at country level. The data was extracted from the New York Times GitHub repository daily, https://github.com/nytimes/covid-19-data.

  10. Cumulative cases of COVID-19 worldwide from Jan. 22, 2020 to Jun. 13, 2023,...

    • statista.com
    • ai-chatbox.pro
    Updated May 22, 2024
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Statista (2024). Cumulative cases of COVID-19 worldwide from Jan. 22, 2020 to Jun. 13, 2023, by day [Dataset]. https://www.statista.com/statistics/1103040/cumulative-coronavirus-covid19-cases-number-worldwide-by-day/
    Explore at:
    Dataset updated
    May 22, 2024
    Dataset authored and provided by
    Statistahttp://statista.com/
    Time period covered
    Jan 22, 2020 - Jun 13, 2023
    Area covered
    Worldwide
    Description

    As of June 13, 2023, there have been almost 768 million cases of coronavirus (COVID-19) worldwide. The disease has impacted almost every country and territory in the world, with the United States confirming around 16 percent of all global cases.

    COVID-19: An unprecedented crisis Health systems around the world were initially overwhelmed by the number of coronavirus cases, and even the richest and most prepared countries struggled. In the most vulnerable countries, millions of people lacked access to critical life-saving supplies, such as test kits, face masks, and respirators. However, several vaccines have been approved for use, and more than 13 billion vaccine doses had already been administered worldwide as of March 2023.

    The coronavirus in the United Kingdom Over 202 thousand people have died from COVID-19 in the UK, which is the highest number in Europe. The tireless work of the National Health Service (NHS) has been applauded, but the country’s response to the crisis has drawn criticism. The UK was slow to start widespread testing, and the launch of a COVID-19 contact tracing app was delayed by months. However, the UK’s rapid vaccine rollout has been a success story, and around 53.7 million people had received at least one vaccine dose as of July 13, 2022.

  11. h

    CoronaVirus

    • huggingface.co
    Updated Aug 22, 2024
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Arabic Machine Learning (2024). CoronaVirus [Dataset]. https://huggingface.co/datasets/arbml/CoronaVirus
    Explore at:
    CroissantCroissant is a format for machine-learning datasets. Learn more about this at mlcommons.org/croissant.
    Dataset updated
    Aug 22, 2024
    Dataset authored and provided by
    Arabic Machine Learning
    Description

    Dataset Card for [Dataset Name]

      Dataset Summary
    

    [More Information Needed]

      Supported Tasks and Leaderboards
    

    [More Information Needed]

      Languages
    

    [More Information Needed]

      Dataset Structure
    
    
    
    
    
      Data Instances
    

    [More Information Needed]

      Data Fields
    

    [More Information Needed]

      Data Splits
    

    [More Information Needed]

      Dataset Creation
    
    
    
    
    
      Curation Rationale
    

    [More Information Needed]

      Source Data… See the full description on the dataset page: https://huggingface.co/datasets/arbml/CoronaVirus.
    
  12. e

    Data from: Coronavirus (COVID-19) Deaths

    • data.europa.eu
    unknown
    Updated Jun 10, 2025
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    GLA City Intelligence (2025). Coronavirus (COVID-19) Deaths [Dataset]. https://data.europa.eu/88u/dataset/coronavirus-covid-19-deaths-2
    Explore at:
    unknownAvailable download formats
    Dataset updated
    Jun 10, 2025
    Dataset authored and provided by
    GLA City Intelligence
    Description

    Due to changes in the collection and availability of data on COVID-19 this page will no longer be updated. The webpage will no longer be available as of 11 May 2023. On-going, reliable sources of data for COVID-19 are available via the COVID-19 dashboard, Office for National Statistics, and the UKHSA

    This page provides a weekly summary of data on deaths related to COVID-19 published by NHS England and the Office for National Statistics. More frequent reporting on COVID-19 deaths is now available here, alongside data on cases, hospitalisations, and vaccinations.

    This update contains data on deaths related to COVID-19 from:

    Summary notes about each these sources are provided at the end of this document.

    Note on interpreting deaths data: statistics from the available sources differ in definition, timing and completeness. It is important to understand these differences when interpreting the data or comparing between sources.

    Weekly Key Points

    • An additional 24 deaths in London hospitals of patients who had tested positive for COVID-19 and an additional 5 where COVID-19 was mentioned on the death certificate were announced in the week ending 27 June 2022. This compares with 40 and 3 for the previous week.
    • A total of 306 deaths in hospitals of patients who had tested positive for COVID-19 and 27 where COVID-19 was mentioned on the death certificate were announced for England as whole. This compares with 301 and 26 for the previous week.
    • The total number of COVID-19 deaths reported in London hospitals of patients who had tested positive for COVID-19 is now 19,102. The total number of deaths in London hospitals where COVID-19 was mentioned on the death certificate is now 1,590.
    • This compares to figures of 119,237 and 8,197 for English hospitals as a whole.
    • Due to the delay between death occurrence and reporting, the estimated number of deaths to this point will be revised upwards over coming days
    • These figures do not include deaths that occurred outside of hospitals. Data from ONS has indicated that the majority (79%) of COVID-19 deaths in London have taken place in hospitals.

    Recently announced deaths in Hospitals

    https://cdn.datapress.cloud/london/img/dataset/2406874d-a960-49d0-bbd5-3ea57c4a9b85/2025-06-09T20%3A54%3A56/e58736bd8800e0fe2b32fc2eb79e37da.webp" width="3840" alt="Embedded Image" />

    21 June 22 June 23 June 24 June 25 June 26 June 27 June London No positive test 0 0 1 4 0 0 0 London Positive test 3 7 2 10 0 0 2 Rest of England No positive test 2 6 4 4 0 0 6 Rest of England Positive test 47 49 41 58 6 0 81 https://cdn.datapress.cloud/london/img/dataset/2406874d-a960-49d0-bbd5-3ea57c4a9b85/2025-06-09T20%3A54%3A57/527d64c1e783180ed460de85c1781ec5.webp" width="3840" alt="Embedded Image" />

    16 May 23 May 30 May 06 June 13 June 20 June 27 June London No positive test 14 3 4 0 4 3 5 London Positive test 45 34 55 20 62 40 24 Rest of England No positive test 41 58 33 23 47 23 22 Rest of England Positive test 456 375 266 218 254 261 282 Deaths by date of occurrence

    https://cdn.datapress.cloud/london/img/dataset/2406874d-a960-49d0-bbd5-3ea57c4a9b85/2025-06-09T20%3A54%3A57/c5d895e060bb2af8255978c92f2d5416.webp" width="3840" alt="Embedded Image" />

    https://cdn.datapress.cloud/london/img/dataset/2406874d-a960-49d0-bbd5-3ea57c4a9b85/2025-06-09T20%3A54%3A58/5f9687a97d398aae070ec876c0b18b35.webp" width="3840" alt="Embedded Image" />

    https://cdn.datapress.cloud/london/img/dataset/2406874d-a960-49d0-bbd5-3ea57c4a9b85/2025-06-09T20%3A54%3A58/4691f3cf7b2cd77786a48c3414bfa910.webp" width="3840" alt="Embedded Image" />

    21 June 22 June 23 June 24 June 25 June 26 June 27 June London 20,683 20,686 20,690 20,691 20,692 20,692 20,692 Rest of England 106,604 106,635 106,679 106,697 106,713 106,733 106,742 Interpreting the data

    The data published by NHS England are incomplete due to:

    • delays in the occur

  13. p

    Latest Coronavirus COVID-19 global figures

    • covid19-today.pages.dev
    json
    Updated Oct 21, 2022
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    CSSE at JHU (2022). Latest Coronavirus COVID-19 global figures [Dataset]. https://covid19-today.pages.dev/
    Explore at:
    jsonAvailable download formats
    Dataset updated
    Oct 21, 2022
    Dataset provided by
    CSSE at JHU
    Worldometers
    License

    https://github.com/disease-sh/API/blob/master/LICENSEhttps://github.com/disease-sh/API/blob/master/LICENSE

    Description

    In past 24 hours, there have been 3,959 new cases, 57 deaths and 14,953 recoveries around the world.

  14. o

    Coronavirus COVID-19 global cases by Johns Hopkins CSSE

    • data.opendevelopmentmekong.net
    Updated Mar 5, 2020
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    (2020). Coronavirus COVID-19 global cases by Johns Hopkins CSSE [Dataset]. https://data.opendevelopmentmekong.net/dataset/coronavirus-covid-19-global-cases-by-johns-hopkins
    Explore at:
    Dataset updated
    Mar 5, 2020
    Description

    This interactive web-based dashboard hosted by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University, to visualize and track reported cases in real-time. The dashboard, first shared publicly on 22nd January 2020, illustrates the location and number of confirmed Coronavirus COVID-19 cases, deaths and recoveries for all affected countries.

  15. COVID-19 Trends in Each Country

    • coronavirus-response-israel-systematics.hub.arcgis.com
    • coronavirus-resources.esri.com
    • +2more
    Updated Mar 28, 2020
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Urban Observatory by Esri (2020). COVID-19 Trends in Each Country [Dataset]. https://coronavirus-response-israel-systematics.hub.arcgis.com/maps/a16bb8b137ba4d8bbe645301b80e5740
    Explore at:
    Dataset updated
    Mar 28, 2020
    Dataset provided by
    Esrihttp://esri.com/
    Authors
    Urban Observatory by Esri
    Area covered
    Earth
    Description

    On March 10, 2023, the Johns Hopkins Coronavirus Resource Center ceased its collecting and reporting of global COVID-19 data. For updated cases, deaths, and vaccine data please visit: World Health Organization (WHO)For more information, visit the Johns Hopkins Coronavirus Resource Center.COVID-19 Trends MethodologyOur goal is to analyze and present daily updates in the form of recent trends within countries, states, or counties during the COVID-19 global pandemic. The data we are analyzing is taken directly from the Johns Hopkins University Coronavirus COVID-19 Global Cases Dashboard, though we expect to be one day behind the dashboard’s live feeds to allow for quality assurance of the data.DOI: https://doi.org/10.6084/m9.figshare.125529863/7/2022 - Adjusted the rate of active cases calculation in the U.S. to reflect the rates of serious and severe cases due nearly completely dominant Omicron variant.6/24/2020 - Expanded Case Rates discussion to include fix on 6/23 for calculating active cases.6/22/2020 - Added Executive Summary and Subsequent Outbreaks sectionsRevisions on 6/10/2020 based on updated CDC reporting. This affects the estimate of active cases by revising the average duration of cases with hospital stays downward from 30 days to 25 days. The result shifted 76 U.S. counties out of Epidemic to Spreading trend and no change for national level trends.Methodology update on 6/2/2020: This sets the length of the tail of new cases to 6 to a maximum of 14 days, rather than 21 days as determined by the last 1/3 of cases. This was done to align trends and criteria for them with U.S. CDC guidance. The impact is areas transition into Controlled trend sooner for not bearing the burden of new case 15-21 days earlier.Correction on 6/1/2020Discussion of our assertion of an abundance of caution in assigning trends in rural counties added 5/7/2020. Revisions added on 4/30/2020 are highlighted.Revisions added on 4/23/2020 are highlighted.Executive SummaryCOVID-19 Trends is a methodology for characterizing the current trend for places during the COVID-19 global pandemic. Each day we assign one of five trends: Emergent, Spreading, Epidemic, Controlled, or End Stage to geographic areas to geographic areas based on the number of new cases, the number of active cases, the total population, and an algorithm (described below) that contextualize the most recent fourteen days with the overall COVID-19 case history. Currently we analyze the countries of the world and the U.S. Counties. The purpose is to give policymakers, citizens, and analysts a fact-based data driven sense for the direction each place is currently going. When a place has the initial cases, they are assigned Emergent, and if that place controls the rate of new cases, they can move directly to Controlled, and even to End Stage in a short time. However, if the reporting or measures to curtail spread are not adequate and significant numbers of new cases continue, they are assigned to Spreading, and in cases where the spread is clearly uncontrolled, Epidemic trend.We analyze the data reported by Johns Hopkins University to produce the trends, and we report the rates of cases, spikes of new cases, the number of days since the last reported case, and number of deaths. We also make adjustments to the assignments based on population so rural areas are not assigned trends based solely on case rates, which can be quite high relative to local populations.Two key factors are not consistently known or available and should be taken into consideration with the assigned trend. First is the amount of resources, e.g., hospital beds, physicians, etc.that are currently available in each area. Second is the number of recoveries, which are often not tested or reported. On the latter, we provide a probable number of active cases based on CDC guidance for the typical duration of mild to severe cases.Reasons for undertaking this work in March of 2020:The popular online maps and dashboards show counts of confirmed cases, deaths, and recoveries by country or administrative sub-region. Comparing the counts of one country to another can only provide a basis for comparison during the initial stages of the outbreak when counts were low and the number of local outbreaks in each country was low. By late March 2020, countries with small populations were being left out of the mainstream news because it was not easy to recognize they had high per capita rates of cases (Switzerland, Luxembourg, Iceland, etc.). Additionally, comparing countries that have had confirmed COVID-19 cases for high numbers of days to countries where the outbreak occurred recently is also a poor basis for comparison.The graphs of confirmed cases and daily increases in cases were fit into a standard size rectangle, though the Y-axis for one country had a maximum value of 50, and for another country 100,000, which potentially misled people interpreting the slope of the curve. Such misleading circumstances affected comparing large population countries to small population counties or countries with low numbers of cases to China which had a large count of cases in the early part of the outbreak. These challenges for interpreting and comparing these graphs represent work each reader must do based on their experience and ability. Thus, we felt it would be a service to attempt to automate the thought process experts would use when visually analyzing these graphs, particularly the most recent tail of the graph, and provide readers with an a resulting synthesis to characterize the state of the pandemic in that country, state, or county.The lack of reliable data for confirmed recoveries and therefore active cases. Merely subtracting deaths from total cases to arrive at this figure progressively loses accuracy after two weeks. The reason is 81% of cases recover after experiencing mild symptoms in 10 to 14 days. Severe cases are 14% and last 15-30 days (based on average days with symptoms of 11 when admitted to hospital plus 12 days median stay, and plus of one week to include a full range of severely affected people who recover). Critical cases are 5% and last 31-56 days. Sources:U.S. CDC. April 3, 2020 Interim Clinical Guidance for Management of Patients with Confirmed Coronavirus Disease (COVID-19). Accessed online. Initial older guidance was also obtained online. Additionally, many people who recover may not be tested, and many who are, may not be tracked due to privacy laws. Thus, the formula used to compute an estimate of active cases is: Active Cases = 100% of new cases in past 14 days + 19% from past 15-25 days + 5% from past 26-49 days - total deaths. On 3/17/2022, the U.S. calculation was adjusted to: Active Cases = 100% of new cases in past 14 days + 6% from past 15-25 days + 3% from past 26-49 days - total deaths. Sources: https://www.cdc.gov/mmwr/volumes/71/wr/mm7104e4.htm https://covid.cdc.gov/covid-data-tracker/#variant-proportions If a new variant arrives and appears to cause higher rates of serious cases, we will roll back this adjustment. We’ve never been inside a pandemic with the ability to learn of new cases as they are confirmed anywhere in the world. After reviewing epidemiological and pandemic scientific literature, three needs arose. We need to specify which portions of the pandemic lifecycle this map cover. The World Health Organization (WHO) specifies six phases. The source data for this map begins just after the beginning of Phase 5: human to human spread and encompasses Phase 6: pandemic phase. Phase six is only characterized in terms of pre- and post-peak. However, these two phases are after-the-fact analyses and cannot ascertained during the event. Instead, we describe (below) a series of five trends for Phase 6 of the COVID-19 pandemic.Choosing terms to describe the five trends was informed by the scientific literature, particularly the use of epidemic, which signifies uncontrolled spread. The five trends are: Emergent, Spreading, Epidemic, Controlled, and End Stage. Not every locale will experience all five, but all will experience at least three: emergent, controlled, and end stage.This layer presents the current trends for the COVID-19 pandemic by country (or appropriate level). There are five trends:Emergent: Early stages of outbreak. Spreading: Early stages and depending on an administrative area’s capacity, this may represent a manageable rate of spread. Epidemic: Uncontrolled spread. Controlled: Very low levels of new casesEnd Stage: No New cases These trends can be applied at several levels of administration: Local: Ex., City, District or County – a.k.a. Admin level 2State: Ex., State or Province – a.k.a. Admin level 1National: Country – a.k.a. Admin level 0Recommend that at least 100,000 persons be represented by a unit; granted this may not be possible, and then the case rate per 100,000 will become more important.Key Concepts and Basis for Methodology: 10 Total Cases minimum threshold: Empirically, there must be enough cases to constitute an outbreak. Ideally, this would be 5.0 per 100,000, but not every area has a population of 100,000 or more. Ten, or fewer, cases are also relatively less difficult to track and trace to sources. 21 Days of Cases minimum threshold: Empirically based on COVID-19 and would need to be adjusted for any other event. 21 days is also the minimum threshold for analyzing the “tail” of the new cases curve, providing seven cases as the basis for a likely trend (note that 21 days in the tail is preferred). This is the minimum needed to encompass the onset and duration of a normal case (5-7 days plus 10-14 days). Specifically, a median of 5.1 days incubation time, and 11.2 days for 97.5% of cases to incubate. This is also driven by pressure to understand trends and could easily be adjusted to 28 days. Source

  16. T

    World Coronavirus COVID-19 Deaths

    • tradingeconomics.com
    csv, excel, json, xml
    Updated Mar 9, 2020
    + more versions
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    TRADING ECONOMICS (2020). World Coronavirus COVID-19 Deaths [Dataset]. https://tradingeconomics.com/world/coronavirus-deaths
    Explore at:
    excel, csv, xml, jsonAvailable download formats
    Dataset updated
    Mar 9, 2020
    Dataset authored and provided by
    TRADING ECONOMICS
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Jan 4, 2020 - May 17, 2023
    Area covered
    World, World
    Description

    The World Health Organization reported 6932591 Coronavirus Deaths since the epidemic began. In addition, countries reported 766440796 Coronavirus Cases. This dataset provides - World Coronavirus Deaths- actual values, historical data, forecast, chart, statistics, economic calendar and news.

  17. Coronavirus (COVID-19) impact index by major sector and dimension 2020

    • statista.com
    • ai-chatbox.pro
    Updated Mar 24, 2020
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Statista (2020). Coronavirus (COVID-19) impact index by major sector and dimension 2020 [Dataset]. https://www.statista.com/statistics/1106302/coronavirus-impact-index-by-industry-2020/
    Explore at:
    Dataset updated
    Mar 24, 2020
    Dataset authored and provided by
    Statistahttp://statista.com/
    Time period covered
    2020
    Area covered
    Worldwide
    Description

    The outbreak of COVID-19, also known as novel coronavirus, is impacting almost all industries and sectors worldwide. Two of the most impacted sectors are manufacturing and travel & transportation. Both sectors are set to be severely impacted by coronavirus pandemic. The impact is ranked on a 5-point scale from minor impact to severe impact: 1 - minor impact 2 - moderate impact 3 - significant impact 4- major impact 5 - severe impact

  18. COVID-19 Outbreak Data

    • data.chhs.ca.gov
    • data.ca.gov
    • +2more
    csv, zip
    Updated Jun 5, 2025
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    California Department of Public Health (2025). COVID-19 Outbreak Data [Dataset]. https://data.chhs.ca.gov/dataset/covid-19-outbreak-data
    Explore at:
    zip, csv(62919), csv(326192)Available download formats
    Dataset updated
    Jun 5, 2025
    Dataset authored and provided by
    California Department of Public Healthhttps://www.cdph.ca.gov/
    Description

    This dataset contains numbers of COVID-19 outbreaks and associated cases, categorized by setting, reported to CDPH since January 1, 2021.

    AB 685 (Chapter 84, Statutes of 2020) and the Cal/OSHA COVID-19 Emergency Temporary Standards (Title 8, Subchapter 7, Sections 3205-3205.4) required non-healthcare employers in California to report workplace COVID-19 outbreaks to their local health department (LHD) between January 1, 2021 – December 31, 2022. Beginning January 1, 2023, non-healthcare employer reporting of COVID-19 outbreaks to local health departments is voluntary, unless a local order is in place. More recent data collected without mandated reporting may therefore be less representative of all outbreaks that have occurred, compared to earlier data collected during mandated reporting. Licensed health facilities continue to be mandated to report outbreaks to LHDs.

    LHDs report confirmed outbreaks to the California Department of Public Health (CDPH) via the California Reportable Disease Information Exchange (CalREDIE), the California Connected (CalCONNECT) system, or other established processes. Data are compiled and categorized by setting by CDPH. Settings are categorized by U.S. Census industry codes. Total outbreaks and cases are included for individual industries as well as for broader industrial sectors.

    The first dataset includes numbers of outbreaks in each setting by month of onset, for outbreaks reported to CDPH since January 1, 2021. This dataset includes some outbreaks with onset prior to January 1 that were reported to CDPH after January 1; these outbreaks are denoted with month of onset “Before Jan 2021.” The second dataset includes cumulative numbers of COVID-19 outbreaks with onset after January 1, 2021, categorized by setting. Due to reporting delays, the reported numbers may not reflect all outbreaks that have occurred as of the reporting date; additional outbreaks may have occurred that have not yet been reported to CDPH.

    While many of these settings are workplaces, cases may have occurred among workers, other community members who visited the setting, or both. Accordingly, these data do not distinguish between outbreaks involving only workers, outbreaks involving only residents or patrons, or outbreaks involving both.

    Several additional data limitations should be kept in mind:

    • Outbreaks are classified as “Insufficient information” for outbreaks where not enough information was available for CDPH to assign an industry code.

    • Some sectors, particularly congregate residential settings, may have increased testing and therefore increased likelihood of outbreak recognition and reporting. As a result, in congregate residential settings, the number of outbreak-associated cases may be more accurate.

    • However, in most settings, outbreak and case counts are likely underestimates. For most cases, it is not possible to identify the source of exposure, as many cases have multiple possible exposures.

    • Because some settings have been at times been closed or open with capacity restrictions, numbers of outbreak reports in those settings do not reflect COVID-19 transmission risk.

    • The number of outbreaks in different settings will depend on the number of different workplaces in each setting. More outbreaks would be expected in settings with many workplaces compared to settings with few workplaces.

  19. Coronavirus (COVID-19) recoveries in Italy as of January 2025

    • statista.com
    Updated Jan 30, 2025
    + more versions
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Statista (2025). Coronavirus (COVID-19) recoveries in Italy as of January 2025 [Dataset]. https://www.statista.com/statistics/1105004/coronavirus-recoveries-since-february-italy/
    Explore at:
    Dataset updated
    Jan 30, 2025
    Dataset authored and provided by
    Statistahttp://statista.com/
    Time period covered
    Feb 24, 2020 - Jan 8, 2025
    Area covered
    Italy
    Description

    Since the spread of the coronavirus (COVID-19) in Italy started in February 2020, the number of cases has increased daily. However, the vast majority of people who contracted the virus have recovered. As of January 8, 2025, the number of individuals who recovered from coronavirus in Italy reached over 26.5 million. Conversely, the number of deaths also kept increasing, reaching over 198.6 thousand. When looking at the regional level, the region with the highest number of recoveries was Lombardy. The region, however, registered the highest number of coronavirus cases in the country. For further information about the coronavirus (COVID-19) pandemic, please visit our dedicated Facts and Figures page.

  20. e

    COVID-19 Coronavirus data - weekly (from 17 December 2020)

    • data.europa.eu
    csv, excel xlsx, html +3
    Updated Dec 17, 2020
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    European Centre for Disease Prevention and Control (2020). COVID-19 Coronavirus data - weekly (from 17 December 2020) [Dataset]. https://data.europa.eu/data/datasets/covid-19-coronavirus-data-weekly-from-17-december-2020?locale=en
    Explore at:
    html, csv, json, unknown, xml, excel xlsxAvailable download formats
    Dataset updated
    Dec 17, 2020
    Dataset authored and provided by
    European Centre for Disease Prevention and Control
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    The dataset contains a weekly situation update on COVID-19, the epidemiological curve and the global geographical distribution (EU/EEA and the UK, worldwide).

    Since the beginning of the coronavirus pandemic, ECDC’s Epidemic Intelligence team has collected the number of COVID-19 cases and deaths, based on reports from health authorities worldwide. This comprehensive and systematic process was carried out on a daily basis until 14/12/2020. See the discontinued daily dataset: COVID-19 Coronavirus data - daily. ECDC’s decision to discontinue daily data collection is based on the fact that the daily number of cases reported or published by countries is frequently subject to retrospective corrections, delays in reporting and/or clustered reporting of data for several days. Therefore, the daily number of cases may not reflect the true number of cases at EU/EEA level at a given day of reporting. Consequently, day to day variations in the number of cases does not constitute a valid basis for policy decisions.

    ECDC continues to monitor the situation. Every week between Monday and Wednesday, a team of epidemiologists screen up to 500 relevant sources to collect the latest figures for publication on Thursday. The data screening is followed by ECDC’s standard epidemic intelligence process for which every single data entry is validated and documented in an ECDC database. An extract of this database, complete with up-to-date figures and data visualisations, is then shared on the ECDC website, ensuring a maximum level of transparency.

    ECDC receives regular updates from EU/EEA countries through the Early Warning and Response System (EWRS), The European Surveillance System (TESSy), the World Health Organization (WHO) and email exchanges with other international stakeholders. This information is complemented by screening up to 500 sources every day to collect COVID-19 figures from 196 countries. This includes websites of ministries of health (43% of the total number of sources), websites of public health institutes (9%), websites from other national authorities (ministries of social services and welfare, governments, prime minister cabinets, cabinets of ministries, websites on health statistics and official response teams) (6%), WHO websites and WHO situation reports (2%), and official dashboards and interactive maps from national and international institutions (10%). In addition, ECDC screens social media accounts maintained by national authorities on for example Twitter, Facebook, YouTube or Telegram accounts run by ministries of health (28%) and other official sources (e.g. official media outlets) (2%). Several media and social media sources are screened to gather additional information which can be validated with the official sources previously mentioned. Only cases and deaths reported by the national and regional competent authorities from the countries and territories listed are aggregated in our database.

    Disclaimer: National updates are published at different times and in different time zones. This, and the time ECDC needs to process these data, might lead to discrepancies between the national numbers and the numbers published by ECDC. Users are advised to use all data with caution and awareness of their limitations. Data are subject to retrospective corrections; corrected datasets are released as soon as processing of updated national data has been completed.

    If you reuse or enrich this dataset, please share it with us.

Share
FacebookFacebook
TwitterTwitter
Email
Click to copy link
Link copied
Close
Cite
National Library of Medicine (NLM) (2020). COVID-19 Genome Sequence Dataset [Dataset]. https://registry.opendata.aws/ncbi-covid-19/

COVID-19 Genome Sequence Dataset

Explore at:
212 scholarly articles cite this dataset (View in Google Scholar)
Dataset updated
Jul 9, 2020
Dataset provided by
<a href="http://nlm.nih.gov/">National Library of Medicine (NLM)</a>
Description

This repository within the ACTIV TRACE initiative houses a comprehensive collection of datasets related to SARS-CoV-2. The processing of SARS-CoV-2 Sequence Read Archive (SRA) files has been optimized to identify genetic variations in viral samples. This information is then presented in the Variant Call Format (VCF). Each VCF file corresponds to the SRA parent-run's accession ID. Additionally, the data is available in the parquet format, making it easier to search and filter using the Amazon Athena Service. The SARS-CoV-2 Variant Calling Pipeline is designed to handle new data every six hours, with updates to the AWS ODP bucket occurring daily.

Search
Clear search
Close search
Google apps
Main menu