This repository within the ACTIV TRACE initiative houses a comprehensive collection of datasets related to SARS-CoV-2. The processing of SARS-CoV-2 Sequence Read Archive (SRA) files has been optimized to identify genetic variations in viral samples. This information is then presented in the Variant Call Format (VCF). Each VCF file corresponds to the SRA parent-run's accession ID. Additionally, the data is available in the parquet format, making it easier to search and filter using the Amazon Athena Service. The SARS-CoV-2 Variant Calling Pipeline is designed to handle new data every six hours, with updates to the AWS ODP bucket occurring daily.

The New York Times is releasing a series of data files with cumulative counts of coronavirus cases in the United States, at the state and county level, over time. We are compiling this time series data from state and local governments and health departments in an attempt to provide a complete record of the ongoing outbreak.

Since late January, The Times has tracked cases of coronavirus in real time as they were identified after testing. Because of the widespread shortage of testing, however, the data is necessarily limited in the picture it presents of the outbreak.

We have used this data to power our maps and reporting tracking the outbreak, and it is now being made available to the public in response to requests from researchers, scientists and government officials who would like access to the data to better understand the outbreak.

The data begins with the first reported coronavirus case in Washington State on Jan. 21, 2020. We will publish regular updates to the data in this repository.

As of May 2, 2023, the outbreak of the coronavirus disease (COVID-19) had been confirmed in almost every country in the world. The virus had infected over 687 million people worldwide, and the number of deaths had reached almost 6.87 million. The most severely affected countries include the U.S., India, and Brazil.

COVID-19: background information COVID-19 is a novel coronavirus that had not previously been identified in humans. The first case was detected in the Hubei province of China at the end of December 2019. The virus is highly transmissible and coughing and sneezing are the most common forms of transmission, which is similar to the outbreak of the SARS coronavirus that began in 2002 and was thought to have spread via cough and sneeze droplets expelled into the air by infected persons.

Naming the coronavirus disease Coronaviruses are a group of viruses that can be transmitted between animals and people, causing illnesses that may range from the common cold to more severe respiratory syndromes. In February 2020, the International Committee on Taxonomy of Viruses and the World Health Organization announced official names for both the virus and the disease it causes: SARS-CoV-2 and COVID-19, respectively. The name of the disease is derived from the words corona, virus, and disease, while the number 19 represents the year that it emerged.

Important: This dataset is updated regularly and the latest version of the dataset is available for download here.

In response to the COVID-19 pandemic, the Allen Institute for AI has partnered with leading research groups to prepare and distribute the COVID-19 Open Research Dataset (CORD-19), a free resource of scholarly articles, including full text content, about COVID-19 and the coronavirus family of viruses for use by the global research community.

This dataset is intended to mobilize researchers to apply recent advances in natural language processing to generate new insights in support of the fight against this infectious disease. The corpus will be updated weekly as new research is published in peer-reviewed publications and archival services like bioRxiv, medRxiv, and others.

By downloading this dataset you are agreeing to the Dataset license. Specific licensing information for individual articles in the dataset is available in the metadata file.

Additional licensing information is available on the PMC website, medRxiv website and bioRxiv website.

Dataset content:

• Commercial use subset
• Non-commercial use subset
• PMC custom license subset
• bioRxiv/medRxiv subset (pre-prints that are not peer reviewed)
• Metadata file
• Readme

Each paper is represented as a single JSON object (see schema file for details).

Description:

The dataset contains all COVID-19 and coronavirus-related research (e.g. SARS, MERS, etc.) from the following sources:

• PubMed's PMC open access corpus using this query (COVID-19 and coronavirus research)
• Additional COVID-19 research articles from a corpus maintained by the WHO
• bioRxiv and medRxiv pre-prints using the same query as PMC (COVID-19 and coronavirus research)

We also provide a comprehensive metadata file of coronavirus and COVID-19 research articles with links to PubMed, Microsoft Academic and the WHO COVID-19 database of publications (includes articles without open access full text).

We recommend using metadata from the comprehensive file when available, instead of parsed metadata in the dataset. Please note the dataset may contain multiple entries for individual PMC IDs in cases when supplementary materials are available.

This repository is linked to the WHO database of publications on coronavirus disease and other resources, such as Microsoft Academic Graph, PubMed, and Semantic Scholar. A coalition including the Chan Zuckerberg Initiative, Georgetown University’s Center for Security and Emerging Technology, Microsoft Research, and the National Library of Medicine of the National Institutes of Health came together to provide this service.

Citation:

When including CORD-19 data in a publication or redistribution, please cite the dataset as follows:

In bibliography:

COVID-19 Open Research Dataset (CORD-19). 2020. Version 2020-03-13. Retrieved from https://pages.semanticscholar.org/coronavirus-research. Accessed YYYY-MM-DD. doi:10.5281/zenodo.3715506

In text:

(CORD-19, 2020)

The Allen Institute for AI and particularly the Semantic Scholar team will continue to provide updates to this dataset as the situation evolves and new research is released.

Context

This repository contains several COVID-19 full genome sequences collected from the NIH database site: https://www.ncbi.nlm.nih.gov/genbank/sars-cov-2-seqs/.

The aim of this repository is not to be a complete duplicate of the NIH one, but to give a simple flavor of what the genomic datasets for this virus look like.

For English, see below

Nederland heeft voor het SARS-CoV-2 virus (coronavirus) een endemische fase bereikt en de GGD teststraten zijn per 17 maart 2023 gesloten. Daardoor wordt de data vanaf 1 april 2023 niet meer bijgewerkt.

Bestand vanaf week 40, 2021: COVID-19_casus_landelijk Bestand tot en met week 39, 2021: COVID-19_casus_landelijk_tm Dit bestand wordt vanaf versie 5 niet meer geüpdatet (zie hieronder)

Beschikbare formaten: .csv en .json Bronsysteem: OSIRIS Algemene Infectieziekten (AIZ)

Beschrijving bestand: Dit bestand bevat de volgende karakteristieken per positief geteste casus in Nederland: Datum voor statistiek, Leeftijdsgroep, Geslacht, Overlijden, Week van overlijden, Provincie, Meldende GGD

Het bestand is als volgt opgebouwd: Een record voor elke laboratorium bevestigde COVID-19 patiënt in Nederland, sinds het begin van de pandemie. Vanaf 11 juli 2022 is deze data opgesplitst (zie beschrijving versie 5). Alleen het bestand vanaf week 40, 2021 wordt iedere dinsdag en vrijdag om 16:00 ververst, op basis van de gegevens zoals op 10:00 uur die dag geregistreerd staan in het landelijk systeem voor meldingsplichtige infectieziekten (Osiris AIZ). Het historische bestand (tot en met week 39, 2021) wordt vanaf 11 juli niet meer geüpdatet.

Beschrijving van de variabelen: Version: Versienummer van de dataset. Wanneer de inhoud van de dataset structureel wordt gewijzigd (dus niet de dagelijkse update of een correctie op record niveau), zal het versienummer aangepast worden (+1) en ook de corresponderende metadata in RIVMdata (https://data.rivm.nl). Versie 2 update (20 januari 2022): - In versie 2 van deze dataset is de variabele ‘hospital_admission’ niet meer beschikbaar. Voor het aantal ziekenhuisopnames wordt verwezen naar de geregistreerde ziekenhuisopnames van Stichting NICE (data.rivm.nl/covid-19/COVID-19_ziekenhuisopnames.html). Versie 3 update (8 februari 2022) - Vanaf 8 februari 2022 worden de positieve SARS-CoV-2 testuitslagen rechtstreeks vanuit CoronIT aan het RIVM gemeld. Ook worden de testuitslagen van andere testaanbieders (zoals Testen voor Toegang) en zorginstellingen (zoals ziekenhuizen, verpleeghuizen en huisartsen) die hun positieve SARS-CoV-2 testuitslagen via het Meldportaal van GGD GHOR invoeren rechtstreeks aan het RIVM gemeld. Meldingen die onderdeel zijn van de bron- en contactonderzoek steekproef en positieve SARS-CoV-2 testuitslagen van zorginstellingen die via zorgmail aan de GGD worden gemeld worden wel via HPZone aan het RIVM gemeld. Vanaf 8 februari wordt de datum van de positieve testuitslag gebruikt en niet meer de datum van melding aan de GGD Versie 4 update (24 maart 2022): - In versie 4 van deze dataset zijn records samengesteld volgens de gemeente herindeling van 24 maart 2022. Zie beschrijving van de variabele Municipal_health_service voor meer informatie. Versie 5 update (11 juli 2022): - Vanaf 11 juli 2022 is deze dataset opgesplitst in twee delen. Het eerste deel bevat de data vanaf het begin van de pandemie tot en met 3 oktober 2021 (week 39) en bevat ‘tm’ in de bestandsnaam. Deze data wordt niet meer geüpdatet. Het tweede deel bevat de data vanaf 4 oktober 2021 (week 40) en wordt iedere werkdag geüpdatet. Versie 6 update (1 september 2022): - Vanaf 1 september 2022 wordt het tweede deel van de data (vanaf week 40 2021) niet meer iedere werkdag geüpdatet, maar op dinsdagen en vrijdagen. De data wordt op deze dagen met terugwerkende kracht bijgewerkt voor de andere dagen. Versie 7 update (3 januari 2023): - Per 1 januari 2023 verzamelt het RIVM geen aanvullende informatie meer. Dit heeft als gevolg dat we vanaf 1 januari 2023 geen overlijdens meer rapporteren en worden de kolommen [Deceased] en [Week of Death] niet meer aangevuld.

Date_file: Datum en tijd waarop de gegevens zijn gepubliceerd door het RIVM

Date_statistics: Datum voor statistiek; eerste ziektedag, indien niet bekend, datum lab positief, indien niet bekend, melddatum aan GGD (formaat: jjjj-mm-dd)

Date_statistics_type: Soort datum die beschikbaar was voor datum voor de variabele "Datum voor statistiek", waarbij: DOO = Date of disease onset : Eerste ziektedag zoals gemeld door GGD. Let op: het is niet altijd bekend of deze eerste ziektedag ook echt al Covid-19 betrof. DPL = Date of first Positive Labresult : Datum van de (eerste) positieve labuitslag. DON = Date of Notification : Datum waarop de melding bij de GGD is binnengekomen.

Agegroup: Leeftijdsgroep bij leven; 0-9, 10-19, ..., 90+; bij overlijden <50, 50-59, 60-69, 70-79, 80-89, 90+, Unknown = Onbekend

Sex: Geslacht; Unknown = Onbekend, Male = Man, Female = Vrouw

Province: Naam van de provincie (op basis van de verblijfplaats van de patiënt)

Deceased: Overlijden. Unknown = Onbekend, Yes = Ja, No = Nee. Vanaf 1 januari 2023 is deze kolom leeg.

Week of Death : Week van overlijden. YYYYMM volgens ISO-week notatie (start op maandag t/m zondag). Vanaf 1 januari 2023 is deze kolom leeg.

Municipal_health_service: GGD die de melding heeft gedaan. Vanaf 24 maart 2022 is dit bestand samengesteld volgens de gemeente indeling van 24 maart 2022. Gemeente Weesp is opgegaan in gemeente Amsterdam. Met deze indeling is de veiligheidsregio Gooi- en Vechtstreek kleiner geworden en de veiligheidsregio Amsterdam-Amstelland groter; GGD Amsterdam is groter geworden en GGD Gooi- en Vechtstreek is kleiner geworden (https://www.cbs.nl/nl-nl/onze-diensten/methoden/classificaties/overig/gemeentelijke-indelingen-per-jaar/indeling-per-jaar/gemeentelijke-indeling-op-1-januari-2022).

Covid-19 characteristics per case, nationwide

The Netherlands has reached an endemic phase for the SARS-CoV-2 virus (coronavirus) and the PHS testing facilities will be closed as of March 17, 2023. As a result, the data will no longer be updated from 1 April 2023.

File from week 40, 2021: COVID-19_case_landelijk File up to and including week 39, 2021: COVID-19_casus_landelijk_tm This file will no longer be updated from version 5 (see below)

Available formats: .csv and .json Source system: OSIRIS General Infectious Diseases (AIZ)

File description: This file contains the following characteristics per positively tested case in the Netherlands: Date for statistics, Age group, Gender, Death, Week of death, Province, Notifying PHS

The file is structured as follows: A record for every lab-confirmed COVID-19 patient in the Netherlands since the start of the pandemic. From July 11, 2022, this data has been split (see description version 5). Only the file from week 40, 2021 onwards will be updated every Tuesday and Friday at 4:00 PM, based on the data as registered at 10:00 AM that day in the national system for notifiable infectious diseases (Osiris AIZ). The historical file (up to and including week 39, 2021) will no longer be updated from July 11, 2022.

Description of the variables: Version: Version number of the dataset. When the content of the dataset is structurally changed (so not the daily update or a correction at record level), the version number will be adjusted (+1) and also the corresponding metadata in RIVMdata (https://data.rivm.nl). Version 2 update (January 20, 2022): - In version 2 of this dataset, the variable 'hospital_admission' is no longer available. For the number of hospital admissions, reference is made to the registered hospital admissions of the NICE Foundation (data.rivm.nl/covid-19/COVID-19_ziekenhuis Admissions.html). Version 3 update (February 8, 2022) - From 8 February 2022, positive SARS-CoV-2 test results will be reported directly from CoronIT to the RIVM. The test results of other test providers (such as Testing for Access) and healthcare institutions (such as hospitals, nursing homes and general practitioners) that enter their positive SARS-CoV-2 test results via the Reporting Portal of GGD GHOR are also reported directly to the RIVM. Reports that are part of the source and contact investigation sample and positive SARS-CoV-2 test results from healthcare institutions that are reported to the PHS via healthcare email are reported to the RIVM via HPZone. From 8 February 2022, the date of the positive test result is used and no longer the date of notification to the PHS. Version 4 update (March 24, 2022): - In version 4 of this dataset, records are compiled according to the municipality reclassification of March 24, 2022. See description of the Municipal_health_service variable for more information. Version 5 Update (July 11, 2022): - As of July 11, 2022, this dataset is split into two parts. The first part contains the dates from the start of the pandemic to October 3, 2021 (week 39) and contains "tm" in the file name. This data will no longer be updated. The second part contains the data from October 4, 2021 (week 40) and is updated every working day. Version 6 update (September 1, 2022): - From September 1, 2022, the second part of the data (from week 40 2021) will no longer be updated every working day, but on Tuesdays and Fridays. The data is retroactively updated on these days for the other days. Version 7 update (January 3, 2023): - As of 1 January 2023, the RIVM will no longer collect additional information. As a result, we will no longer report deaths from January 1, 2023 and the [Deceased] and [Week of Death] columns will no longer be completed.

Date_file: Date and time when the data was published by the RIVM

Date_statistics: Date for statistics; first day of illness, if not known, date of positive lab result, if not known, reporting date to PHS (format: yyyy-mm-dd)

Date_statistics_type: Type of date that was available for date for the "Date for statistics" variable, where: DOO = Date of disease onset : First day of illness as reported by PHS. Please note: it is not always known whether this first day of illness actually concerned Covid-19. DPL = Date of first Positive Lab result : Date of the (first) positive lab result. DON = Date of

This file contains supporting data for "Cardiovascular pathophysiology upon ?SARS-CoV-2 infection and COVID-19 vaccination". The emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in 2019, which lead to the coronavirus disease 2019 (COVID-19) has posed a major threat to the global public health-care system. This project aims to model cardiovascular pathophysiology upon SARS-CoV-2 infection and COVID-19 vaccination in vitro and thereby develop a deeper understanding on the underlying mechanisms. Three in vitro cardiovascular models including human embryonic stem cell (hESC)-derived cardiomyocytes, engineered human ventricular cardiac tissue strip (hvCTS), and engineered human blood vessel construct were employed.

Nearly one-third of COVID-19 cases in Poland were diagnosed by contact in a hospital or clinic (30.1 percent). This applies to both patients and the medical staff of health care facilities. Among all confirmed SARS-CoV-2 infections, cases (35.5 percent) originating from quarantine are significant. 27.8 percent were cases arising from horizontal transmission in society.

For further information about the coronavirus (COVID-19) pandemic, please visit our dedicated Facts and Figures page.

The ongoing SARS-CoV-2 pandemic has devastated the global economy and claimed more than one million lives, presenting an urgent global health crisis. To identify host factors required for infection by SARS-CoV-2 and seasonal coronaviruses, we designed a focused high-coverage CRISPR-Cas9 library targeting 332 members of a recently published SARS-CoV-2 protein interactome. We leveraged the compact nature of this library to systematically screen SARS-CoV-2 at two physiologically relevant temperatures (33 ºC and 37 ºC) along with three related coronaviruses (HCoV-229E, HCoV-NL63, and HCoV-OC43), allowing us to probe this interactome at a much higher resolution relative to genome scale studies. This approach yielded several new insights, including unexpected virus-specific differences in Rab GTPase requirements and GPI anchor biosynthesis, as well as identification of multiple pan-coronavirus factors involved in cholesterol homeostasis. This coronavirus essentiality catalog could inform ongoing drug development efforts aimed at intercepting and treating COVID-19, and help prepare for future coronavirus outbreaks.

Raw datasets and blot for Iketani et al 2022, Cell Host Microbe (Functional map of SARS-CoV-2 3CL protease reveals tolerant and immutable sites).

COVID-19, coronavirus disease 2019; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2. (XLSX)

In the two weeks leading up to January 24, 2022, all analyzed sequences of the coronavirus (COVID-19) in Japan corresponded to the Omicron (B.1.1.529) variant. Contrastingly, 70 percent of the sequences analyzed in Vietnam during that time frame were of the Delta (B.1.617.2) variant.

The dataset shows the 7-day median of the RNA copies of the specified virus per day and 100’000 people in the wastewater treatment plant (ARA) Basel as well as the 7-day median of the corresponding case numbers. The data set is usually updated on Tuesdays with the data until the previous Sunday. ProRheno AG (operator of ARA Basel) takes a 24h sample of the raw waste water, which is examined for RNA of the specified viruses by the Cantonal Laboratory Basel-Stadt (KL BS). The measurement methodology has not been changed since the beginning of the monitoring: see publication https://smw.ch/index.php/smw/article/view/3226. The plausibility of the values is continuously checked against internal quality parameters. The study area comprises the catchment area of the ARA Basel, which consists mainly of the canton of Basel-Stadt as well as the municipalities of Allschwil, Binningen, Birsfelden, Bottmingen, Oberwil and Schönenbuch (all Canton Baselland). Until the end of June 2023, the measured values of the KL BS were also presented on the wastewater dashboard of the BAG Covid-19 Switzerland | Coronavirus | Dashboard (https://www.covid19.admin.ch/de/epidemiologic/waste-water?wasteWaterFacility=270101). As of July 2023, the measured values of the EAWAG SARS-CoV2 in wastewater – Eawag (https://www.eawag.ch/de/abteilung/sww/projekte/sars-cov2-im-abwasser/) will be published on this page, which also examines the raw wastewater of ARA Basel. The examination methods used by KL BS and EAWAG are very similar but not identical.Case figures correspond to the number of confirmed and reported cases of infections in the catchment area of ARA Basel.Interpretation of curvesThe monitoring of viruses in wastewater is primarily about identifying trends (in particular, of course, the increase of a circulating virus). It is not possible to derive a certain number of cases or the severity of an infection. A comparison of the curve rash (height of peaks) at different times is hardly possible, because different virus variants lead to different amounts of virus per case. Different virus variants can also affect the symptoms, so that, for example, infections in humans run without a trace, but nevertheless viruses are released into the wastewater.

As of November 11, 2022, almost 96.8 million confirmed cases of COVID-19 had been reported by the World Health Organization (WHO) for the United States. The pandemic has impacted all 50 states, with vast numbers of cases recorded in California, Texas, and Florida.

The coronavirus in the U.S. The coronavirus hit the United States in mid-March 2020, and cases started to soar at an alarming rate. The country has performed a high number of COVID-19 tests, which is a necessary step to manage the outbreak, but new coronavirus cases in the U.S. have spiked several times since the pandemic began, most notably at the end of 2022. However, restrictions in many states have been eased as new cases have declined.

The origin of the coronavirus In December 2019, officials in Wuhan, China, were the first to report cases of pneumonia with an unknown cause. A new human coronavirus – SARS-CoV-2 – has since been discovered, and COVID-19 is the infectious disease it causes. All available evidence to date suggests that COVID-19 is a zoonotic disease, which means it can spread from animals to humans. The WHO says transmission is likely to have happened through an animal that is handled by humans. Researchers do not support the theory that the virus was developed in a laboratory.

Attempt to classify the number of confirmed SARS-CoV-2 cases in French territory by region.

The data comes from the state’s media and health sites. The purpose of the document is to be as precise as possible.

Sources: — https://solidarites-sante.gouv.fr/soins-et-maladies/maladies/maladies-infectieuses/coronavirus/article/points-de-situation-coronavirus-covid-19 — https://www.santepubliquefrance.fr/maladies-et-traumatismes/maladies-et-infections-respiratoires/infection-a-coronavirus/articles/infection-au-nouveau-coronavirus-sars-cov-2-covid-19-france-et-monde — https://france3-regions.francetvinfo.fr — https://www.ars.sante.fr/ — https://www.facebook.com/MinSoliSante/ — https://geodes.santepubliquefrance.fr/#c=home

Other sources on data.gouv.fr interesting:

— https://www.data.gouv.fr/fr/datasets/chiffres-cles-concernant-lepidemie-de-covid19-en-france/ — https://www.data.gouv.fr/fr/reuses/visualisation-et-analyse-covid-19-monde-france-regions-francaises/ — https://www.data.gouv.fr/fr/reuses/tableau-de-bord-de-suivi-de-lepidemie-de-covid19/

Other:

— https://www.arcgis.com/apps/opsdashboard/index.html#/3a278da2d7ab4a8a8e1b4ea8bea7121b — https://www.esrifrance.fr/coronavirus-ressources.aspx — https://gisanddata.maps.arcgis.com/apps/opsdashboard/index.html#/bda7594740fd40299423467b48e9ecf6 — https://nextstrain.org/ncov

This dataset includes CSV files that contain IDs and sentiment scores of the tweets related to the COVID-19 pandemic. The tweets have been collected by an on-going project deployed at https://live.rlamsal.com.np. The model monitors the real-time Twitter feed for coronavirus-related tweets using 90+ different keywords and hashtags that are commonly used while referencing the pandemic. This dataset has been wholly re-designed on March 20, 2020, to comply with the content redistribution policy set by Twitter.The paper associated with this dataset is available here: Design and analysis of a large-scale COVID-19 tweets dataset-------------------------------------Related datasets:(a) Tweets Originating from India During COVID-19 Lockdowns(b) Coronavirus (COVID-19) Tweets Sentiment Trend (Global)-------------------------------------Below is the quick overview of this dataset.— Dataset name: COV19Tweets Dataset— Number of tweets : 857,809,018 tweets— Coverage : Global— Language : English (EN)— Dataset usage terms : By using this dataset, you agree to (i) use the content of this dataset and the data generated from the content of this dataset for non-commercial research only, (ii) remain in compliance with Twitter's Developer Policy and (iii) cite the following paper:Lamsal, R. Design and analysis of a large-scale COVID-19 tweets dataset. Applied Intelligence (2020). https://doi.org/10.1007/s10489-020-02029-z— Geo-tagged Version: Coronavirus (COVID-19) Geo-tagged Tweets Dataset (GeoCOV19Tweets Dataset)— Dataset updates : Everyday— Active keywords and hashtags (archive: keywords.tsv) : "corona", "#corona", "coronavirus", "#coronavirus", "covid", "#covid", "covid19", "#covid19", "covid-19", "#covid-19", "sarscov2", "#sarscov2", "sars cov2", "sars cov 2", "covid_19", "#covid_19", "#ncov", "ncov", "#ncov2019", "ncov2019", "2019-ncov", "#2019-ncov", "pandemic", "#pandemic" "#2019ncov", "2019ncov", "quarantine", "#quarantine", "flatten the curve", "flattening the curve", "#flatteningthecurve", "#flattenthecurve", "hand sanitizer", "#handsanitizer", "#lockdown", "lockdown", "social distancing", "#socialdistancing", "work from home", "#workfromhome", "working from home", "#workingfromhome", "ppe", "n95", "#ppe", "#n95", "#covidiots", "covidiots", "herd immunity", "#herdimmunity", "pneumonia", "#pneumonia", "chinese virus", "#chinesevirus", "wuhan virus", "#wuhanvirus", "kung flu", "#kungflu", "wearamask", "#wearamask", "wear a mask", "vaccine", "vaccines", "#vaccine", "#vaccines", "corona vaccine", "corona vaccines", "#coronavaccine", "#coronavaccines", "face shield", "#faceshield", "face shields", "#faceshields", "health worker", "#healthworker", "health workers", "#healthworkers", "#stayhomestaysafe", "#coronaupdate", "#frontlineheroes", "#coronawarriors", "#homeschool", "#homeschooling", "#hometasking", "#masks4all", "#wfh", "wash ur hands", "wash your hands", "#washurhands", "#washyourhands", "#stayathome", "#stayhome", "#selfisolating", "self isolating"Dataset Files (the local time mentioned below is GMT+5:45)corona_tweets_01.csv + corona_tweets_02.csv + corona_tweets_03.csv: 2,475,980 tweets (March 20, 2020 01:37 AM - March 21, 2020 09:25 AM)corona_tweets_04.csv: 1,233,340 tweets (March 21, 2020 09:27 AM - March 22, 2020 07:46 AM)corona_tweets_05.csv: 1,782,157 tweets (March 22, 2020 07:50 AM - March 23, 2020 09:08 AM)corona_tweets_06.csv: 1,771,295 tweets (March 23, 2020 09:11 AM - March 24, 2020 11:35 AM)corona_tweets_07.csv: 1,479,651 tweets (March 24, 2020 11:42 AM - March 25, 2020 11:43 AM)corona_tweets_08.csv: 1,272,592 tweets (March 25, 2020 11:47 AM - March 26, 2020 12:46 PM)corona_tweets_09.csv: 1,091,429 tweets (March 26, 2020 12:51 PM - March 27, 2020 11:53 AM)corona_tweets_10.csv: 1,172,013 tweets (March 27, 2020 11:56 AM - March 28, 2020 01:59 PM)corona_tweets_11.csv: 1,141,210 tweets (March 28, 2020 02:03 PM - March 29, 2020 04:01 PM)corona_tweets_12.csv: 793,417 tweets (March 30, 2020 02:01 PM - March 31, 2020 10:16 AM)corona_tweets_13.csv: 1,029,294 tweets (March 31, 2020 10:20 AM - April 01, 2020 10:59 AM)corona_tweets_14.csv: 920,076 tweets (April 01, 2020 11:02 AM - April 02, 2020 12:19 PM)corona_tweets_15.csv: 826,271 tweets (April 02, 2020 12:21 PM - April 03, 2020 02:38 PM)corona_tweets_16.csv: 612,512 tweets (April 03, 2020 02:40 PM - April 04, 2020 11:54 AM)corona_tweets_17.csv: 685,560 tweets (April 04, 2020 11:56 AM - April 05, 2020 12:54 PM)corona_tweets_18.csv: 717,301 tweets (April 05, 2020 12:56 PM - April 06, 2020 10:57 AM)corona_tweets_19.csv: 722,921 tweets (April 06, 2020 10:58 AM - April 07, 2020 12:28 PM)corona_tweets_20.csv: 554,012 tweets (April 07, 2020 12:29 PM - April 08, 2020 12:34 PM)corona_tweets_21.csv: 589,679 tweets (April 08, 2020 12:37 PM - April 09, 2020 12:18 PM)corona_tweets_22.csv: 517,718 tweets (April 09, 2020 12:20 PM - April 10, 2020 09:20 AM)corona_tweets_23.csv: 601,199 tweets (April 10, 2020 09:22 AM - April 11, 2020 10:22 AM)corona_tweets_24.csv: 497,655 tweets (April 11, 2020 10:24 AM - April 12, 2020 10:53 AM)corona_tweets_25.csv: 477,182 tweets (April 12, 2020 10:57 AM - April 13, 2020 11:43 AM)corona_tweets_26.csv: 288,277 tweets (April 13, 2020 11:46 AM - April 14, 2020 12:49 AM)corona_tweets_27.csv: 515,739 tweets (April 14, 2020 11:09 AM - April 15, 2020 12:38 PM)corona_tweets_28.csv: 427,088 tweets (April 15, 2020 12:40 PM - April 16, 2020 10:03 AM)corona_tweets_29.csv: 433,368 tweets (April 16, 2020 10:04 AM - April 17, 2020 10:38 AM)corona_tweets_30.csv: 392,847 tweets (April 17, 2020 10:40 AM - April 18, 2020 10:17 AM)> With the addition of some more coronavirus specific keywords, the number of tweets captured day has increased significantly, therefore, the CSV files hereafter will be zipped. Lets save some bandwidth.corona_tweets_31.csv: 2,671,818 tweets (April 18, 2020 10:19 AM - April 19, 2020 09:34 AM)corona_tweets_32.csv: 2,393,006 tweets (April 19, 2020 09:43 AM - April 20, 2020 10:45 AM)corona_tweets_33.csv: 2,227,579 tweets (April 20, 2020 10:56 AM - April 21, 2020 10:47 AM)corona_tweets_34.csv: 2,211,689 tweets (April 21, 2020 10:54 AM - April 22, 2020 10:33 AM)corona_tweets_35.csv: 2,265,189 tweets (April 22, 2020 10:45 AM - April 23, 2020 10:49 AM)corona_tweets_36.csv: 2,201,138 tweets (April 23, 2020 11:08 AM - April 24, 2020 10:39 AM)corona_tweets_37.csv: 2,338,713 tweets (April 24, 2020 10:51 AM - April 25, 2020 11:50 AM)corona_tweets_38.csv: 1,981,835 tweets (April 25, 2020 12:20 PM - April 26, 2020 09:13 AM)corona_tweets_39.csv: 2,348,827 tweets (April 26, 2020 09:16 AM - April 27, 2020 10:21 AM)corona_tweets_40.csv: 2,212,216 tweets (April 27, 2020 10:33 AM - April 28, 2020 10:09 AM)corona_tweets_41.csv: 2,118,853 tweets (April 28, 2020 10:20 AM - April 29, 2020 08:48 AM)corona_tweets_42.csv: 2,390,703 tweets (April 29, 2020 09:09 AM - April 30, 2020 10:33 AM)corona_tweets_43.csv: 2,184,439 tweets (April 30, 2020 10:53 AM - May 01, 2020 10:18 AM)corona_tweets_44.csv: 2,223,013 tweets (May 01, 2020 10:23 AM - May 02, 2020 09:54 AM)corona_tweets_45.csv: 2,216,553 tweets (May 02, 2020 10:18 AM - May 03, 2020 09:57 AM)corona_tweets_46.csv: 2,266,373 tweets (May 03, 2020 10:09 AM - May 04, 2020 10:17 AM)corona_tweets_47.csv: 2,227,489 tweets (May 04, 2020 10:32 AM - May 05, 2020 10:17 AM)corona_tweets_48.csv: 2,218,774 tweets (May 05, 2020 10:38 AM - May 06, 2020 10:26 AM)corona_tweets_49.csv: 2,164,251 tweets (May 06, 2020 10:35 AM - May 07, 2020 09:33 AM)corona_tweets_50.csv: 2,203,686 tweets (May 07, 2020 09:55 AM - May 08, 2020 09:35 AM)corona_tweets_51.csv: 2,250,019 tweets (May 08, 2020 09:39 AM - May 09, 2020 09:49 AM)corona_tweets_52.csv: 2,273,705 tweets (May 09, 2020 09:55 AM - May 10, 2020 10:11 AM)corona_tweets_53.csv: 2,208,264 tweets (May 10, 2020 10:23 AM - May 11, 2020 09:57 AM)corona_tweets_54.csv: 2,216,845 tweets (May 11, 2020 10:08 AM - May 12, 2020 09:52 AM)corona_tweets_55.csv: 2,264,472 tweets (May 12, 2020 09:59 AM - May 13, 2020 10:14 AM)corona_tweets_56.csv: 2,339,709 tweets (May 13, 2020 10:24 AM - May 14, 2020 11:21 AM)corona_tweets_57.csv: 2,096,878 tweets (May 14, 2020 11:38 AM - May 15, 2020 09:58 AM)corona_tweets_58.csv: 2,214,205 tweets (May 15, 2020 10:13 AM - May 16, 2020 09:43 AM)> The server and the databases have been optimized; therefore, there is a significant rise in the number of tweets captured per day.corona_tweets_59.csv: 3,389,090 tweets (May 16, 2020 09:58 AM - May 17, 2020 10:34 AM)corona_tweets_60.csv: 3,530,933 tweets (May 17, 2020 10:36 AM - May 18, 2020 10:07 AM)corona_tweets_61.csv: 3,899,631 tweets (May 18, 2020 10:08 AM - May 19, 2020 10:07 AM)corona_tweets_62.csv: 3,767,009 tweets (May 19, 2020 10:08 AM - May 20, 2020 10:06 AM)corona_tweets_63.csv: 3,790,455 tweets (May 20, 2020 10:06 AM - May 21, 2020 10:15 AM)corona_tweets_64.csv: 3,582,020 tweets (May 21, 2020 10:16 AM - May 22, 2020 10:13 AM)corona_tweets_65.csv: 3,461,470 tweets (May 22, 2020 10:14 AM - May 23, 2020 10:08 AM)corona_tweets_66.csv: 3,477,564 tweets (May 23, 2020 10:08 AM - May 24, 2020 10:02 AM)corona_tweets_67.csv: 3,656,446 tweets (May 24, 2020 10:02 AM - May 25, 2020 10:10 AM)corona_tweets_68.csv: 3,474,952 tweets (May 25, 2020 10:11 AM - May 26, 2020 10:22 AM)corona_tweets_69.csv: 3,422,960 tweets (May 26, 2020 10:22 AM - May 27, 2020 10:16 AM)corona_tweets_70.csv: 3,480,999 tweets (May 27, 2020 10:17 AM - May 28, 2020 10:35 AM)corona_tweets_71.csv: 3,446,008 tweets (May 28, 2020 10:36 AM - May 29, 2020 10:07 AM)corona_tweets_72.csv: 3,492,841 tweets (May 29, 2020 10:07 AM - May 30, 2020 10:14 AM)corona_tweets_73.csv: 3,098,817 tweets (May 30, 2020 10:15 AM - May 31, 2020 10:13 AM)corona_tweets_74.csv: 3,234,848 tweets (May 31, 2020 10:13 AM - June 01, 2020 10:14 AM)corona_tweets_75.csv: 3,206,132 tweets (June 01, 2020 10:15 AM - June 02, 2020 10:07 AM)corona_tweets_76.csv: 3,206,417 tweets (June 02, 2020 10:08 AM - June 03, 2020 10:26 AM)corona_tweets_77.csv: 3,256,225 tweets (June 03, 2020

The aim of the special survey of the GESIS panel on the outbreak of the corona virus SARS-CoV-2 in Germany was to collect timely data on the effects of the corona crisis on people´s daily lives. The study focused on questions of risk perception, risk minimization measures, evaluation of political measures and their compliance, trust in politics and institutions, changed employment situation, childcare obligations, and media consumption. Due to the need for timely data collection, only the GESIS panel sub-sample of online respondents was invited (about three quarters of the sample). Since, due to time constraints, respondents could only participate in the online survey but not by mail, the results cannot be easily transferred to the overall population. Further longitudinal surveys on Covid-19 with the entire sample of the GESIS panel are planned for 2020.

Topics: Risk perception: Probability of events related to corona infection in the next two months (self, infection of a person from close social surrondings, hospital treatment, quarantine measures regardless of whether infected or not, infecting other people)

Risk minimization: risk minimization measures taken in the last seven days (avoided certain (busy) places, kept minimum distance to other people, adapted school or work situation, quarantine due to symptoms or without symptoms, washed hands more often, used disinfectant, stocks increased, reduced social interactions, worn face mask, other, none of these measures).

Evaluation of the effectiveness of various policy measures to combat the further spread of corona virus (closure of day-care centres, kindergartens and schools, closure of sports facilities, closure of bars, cafés and restaurants, closure of all shops except supermarkets and pharmacies, ban on visiting hospitals, nursing homes and old people´s homes, curfew for persons aged 70 and over or people with health problems or for anyone not working in the health sector or other critical professions (except for basic purchases and urgent medical care).

Curfew compliance or refusal: Willingness to obey a curfew vs. refusal; reasons for the compliance with curfew (social duty, fear of punishment, protection against infection, fear of infecting others (loved ones, infecting others in general, a risk group); reasons for refusal of curfew (restrictions too drastic or not justified, other obligations, does not stop the spread, not affected by the outbreak, boring at home, will not be punished).

Evaluation of the effectiveness of various government measures (medical care, restrictions on social life such as closure of public facilities and businesses, reduction of economic damage, communication with the population).

Trust in politics and institutions with regard to dealing with the coronavirus (physician, local health authority, local and municipal administration, Robert Koch Institute (RKI), Federal Government, German Chancellor, Ministry of Health, World Health Organization (WHO), scientists).

Changed employment situation: employment status at the beginning of March; change in occupational situation since the spread of coronavirus: dependent employees: number of hours reduced, number of hours increased, more home office, leave of absence with/ without continued wage payment , fired, no change; self-employed: working hours reduced, working hours increased, more home office, revenue decreased, revenue increased, company temporarily closed by the authorities, company temporarily voluntarily closed, financial hardship, company permanently closed or insolvent, no change.

Childcare: children under 12 in the household; organisation of childcare during the closure of day-care centres, kindergartens and schools (staying at home, partner stays at home, older siblings take care, grandparents are watching, etc.)

Media consumption on Corona: information sources used for Corona (e.g. nationwide public or private television or radio, local public or private television or radio, national newspapers or local newspapers, Facebook, other social media, personal conversations with friends and family, other, do not inform myself on the subject); frequency of Facebook usage; information about Corona obtained from regional Facebook page or regional Facebook group.

Demography: sex; age (categorized); education (categorized); intention to vote and choice of party (Sunday question); Left-right self-assessment; marital status; size of household.

Additionally coded: Respondent ID;...

Note: Reporting of new COVID-19 Case Surveillance data will be discontinued July 1, 2024, to align with the process of removing SARS-CoV-2 infections (COVID-19 cases) from the list of nationally notifiable diseases. Although these data will continue to be publicly available, the dataset will no longer be updated.

Authorizations to collect certain public health data expired at the end of the U.S. public health emergency declaration on May 11, 2023. The following jurisdictions discontinued COVID-19 case notifications to CDC: Iowa (11/8/21), Kansas (5/12/23), Kentucky (1/1/24), Louisiana (10/31/23), New Hampshire (5/23/23), and Oklahoma (5/2/23). Please note that these jurisdictions will not routinely send new case data after the dates indicated. As of 7/13/23, case notifications from Oregon will only include pediatric cases resulting in death.

This case surveillance public use dataset has 19 elements for all COVID-19 cases shared with CDC and includes demographics, geography (county and state of residence), any exposure history, disease severity indicators and outcomes, and presence of any underlying medical conditions and risk behaviors.

Currently, CDC provides the public with three versions of COVID-19 case surveillance line-listed data: this 19 data element dataset with geography, a 12 data element public use dataset, and a 33 data element restricted access dataset.

The following apply to the public use datasets and the restricted access dataset:

• Data elements can be found on the COVID-19 case report form located at www.cdc.gov/coronavirus/2019-ncov/downloads/pui-form.pdf.
• Data are considered provisional by CDC and are subject to change until the data are reconciled and verified with the state and territorial data providers.
• Some data are suppressed to protect individual privacy.
• Datasets will include all cases with the earliest date available in each record (date received by CDC or date related to illness/specimen collection) at least 14 days prior to the creation of the current datasets. This 14-day lag allows case reporting to be stabilized and ensure that time-dependent outcome data are accurately captured.
• Datasets are updated monthly.
• Datasets are created using CDC’s Policy on Public Health Research and Nonresearch Data Management and Access and include protections designed to protect individual privacy.
• For more information about data collection and reporting, please see https://www.cdc.gov/coronavirus/2019-ncov/covid-data/about-us-cases-deaths.html.
• For more information about the COVID-19 case surveillance data, please see https://www.cdc.gov/coronavirus/2019-ncov/covid-data/faq-surveillance.html
  

Overview

The COVID-19 case surveillance database includes individual-level data reported to U.S. states and autonomous reporting entities, including New York City and the District of Columbia (D.C.), as well as U.S. territories and affiliates. On April 5, 2020, COVID-19 was added to the Nationally Notifiable Condition List and classified as “immediately notifiable, urgent (within 24 hours)” by a Council of State and Territorial Epidemiologists (CSTE) Interim Position Statement (<a href="https://cdn.ymaws.com/www.cste.org/resource/resmgr/ps/positionstatement2020/Interim-20-ID-01_COVID

The Communities, Households and SARS-CoV-2 Epidemiology (CHASING) COVID Cohort Study is a community-based prospective cohort study launched during the upswing of the USA COVID-19 epidemic. The objectives of the cohort study are to: (1) estimate and evaluate determinants of the incidence of SARS-CoV-2 infection, disease and deaths; (2) assess the impact of the pandemic on psychosocial and economic outcomes and (3) assess the uptake of pandemic mitigation strategies. 6740 people are enrolled in the cohort, including participants from all 50 US states, the District of Columbia, Puerto Rico and Guam. Participants are contacted regularly to complete study assessments, including interviews and dried blood spot specimen collection for serologic testing.

Datasets are provided in CSV and sas7bdat (with formatting script) file formats.