Context

Coronavirus disease (COVID-19) is an infectious disease caused by a newly discovered coronavirus. Most people infected with COVID-19 virus will experience mild to moderate respiratory illness and recover without requiring special treatment. Older people, and those with underlying medical problems like cardiovascular disease, diabetes, chronic respiratory disease, and cancer are more likely to develop serious illness. During the entire course of the pandemic, one of the main problems that healthcare providers have faced is the shortage of medical resources and a proper plan to efficiently distribute them. In these tough times, being able to predict what kind of resource an individual might require at the time of being tested positive or even before that will be of immense help to the authorities as they would be able to procure and arrange for the resources necessary to save the life of that patient.

The main goal of this project is to build a machine learning model that, given a Covid-19 patient's current symptom, status, and medical history, will predict whether the patient is in high risk or not.

content

The dataset was provided by the Mexican government (link). This dataset contains an enormous number of anonymized patient-related information including pre-conditions. The raw dataset consists of 21 unique features and 1,048,576 unique patients. In the Boolean features, 1 means "yes" and 2 means "no". values as 97 and 99 are missing data.

• sex: 1 for female and 2 for male.
• age: of the patient.
• classification: covid test findings. Values 1-3 mean that the patient was diagnosed with covid in different degrees. 4 or higher means that the patient is not a carrier of covid or that the test is inconclusive.
• patient type: type of care the patient received in the unit. 1 for returned home and 2 for hospitalization.
• pneumonia: whether the patient already have air sacs inflammation or not.
• pregnancy: whether the patient is pregnant or not.
• diabetes: whether the patient has diabetes or not.
• copd: Indicates whether the patient has Chronic obstructive pulmonary disease or not.
• asthma: whether the patient has asthma or not.
• inmsupr: whether the patient is immunosuppressed or not.
• hypertension: whether the patient has hypertension or not.
• cardiovascular: whether the patient has heart or blood vessels related disease.
• renal chronic: whether the patient has chronic renal disease or not.
• other disease: whether the patient has other disease or not.
• obesity: whether the patient is obese or not.
• tobacco: whether the patient is a tobacco user.
• usmr: Indicates whether the patient treated medical units of the first, second or third level.
• medical unit: type of institution of the National Health System that provided the care.
• intubed: whether the patient was connected to the ventilator.
• icu: Indicates whether the patient had been admitted to an Intensive Care Unit.
• date died: If the patient died indicate the date of death, and 9999-99-99 otherwise.

This repository within the ACTIV TRACE initiative houses a comprehensive collection of datasets related to SARS-CoV-2. The processing of SARS-CoV-2 Sequence Read Archive (SRA) files has been optimized to identify genetic variations in viral samples. This information is then presented in the Variant Call Format (VCF). Each VCF file corresponds to the SRA parent-run's accession ID. Additionally, the data is available in the parquet format, making it easier to search and filter using the Amazon Athena Service. The SARS-CoV-2 Variant Calling Pipeline is designed to handle new data every six hours, with updates to the AWS ODP bucket occurring daily.

As of May 2, 2023, there were roughly 687 million global cases of COVID-19. Around 660 million people had recovered from the disease, while there had been almost 6.87 million deaths. The United States, India, and Brazil have been among the countries hardest hit by the pandemic.

The various types of human coronavirus The SARS-CoV-2 virus is the seventh known coronavirus to infect humans. Its emergence makes it the third in recent years to cause widespread infectious disease following the viruses responsible for SARS and MERS. A continual problem is that viruses naturally mutate as they attempt to survive. Notable new variants of SARS-CoV-2 were first identified in the UK, South Africa, and Brazil. Variants are of particular interest because they are associated with increased transmission.

Vaccination campaigns Common human coronaviruses typically cause mild symptoms such as a cough or a cold, but the novel coronavirus SARS-CoV-2 has led to more severe respiratory illnesses and deaths worldwide. Several COVID-19 vaccines have now been approved and are being used around the world.

The New York Times is releasing a series of data files with cumulative counts of coronavirus cases in the United States, at the state and county level, over time. We are compiling this time series data from state and local governments and health departments in an attempt to provide a complete record of the ongoing outbreak.

Since the first reported coronavirus case in Washington State on Jan. 21, 2020, The Times has tracked cases of coronavirus in real time as they were identified after testing. Because of the widespread shortage of testing, however, the data is necessarily limited in the picture it presents of the outbreak.

We have used this data to power our maps and reporting tracking the outbreak, and it is now being made available to the public in response to requests from researchers, scientists and government officials who would like access to the data to better understand the outbreak.

The data begins with the first reported coronavirus case in Washington State on Jan. 21, 2020. We will publish regular updates to the data in this repository.

The pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) led to the death of millions of people worldwide and thousands more infected individuals developed sequelae due to the disease of the new coronavirus of 2019 (COVID-19). The development of several studies has contributed to the knowledge about the evolution of SARS-CoV2 infection and the disease to more severe forms. Despite this information being debated in the scientific literature, many mechanisms still need to be better understood in order to control the spread of the virus and treat clinical cases of COVID-19. In this article, we carried out an extensive literature review in order to bring together, in a single article, the biological, social, genetic, diagnostic, therapeutic, immunization, and even socioeconomic aspects that impact the SAR-CoV-2 pandemic. This information gathered in this article will enable a broad and consistent reading of the main aspects related to the current pandemic.

Main differences between COVID-19, SARS, and MERS.

A Coronavirus infectious disease that is characterized by fever, cough and shortness of breath and that has_material_basis_in Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), a subtype of Betacoronavirus pandemicum. url:https://www.who.int/emergencies/diseases/novel-coronavirus-2019

This pathway, SARS-CoV-2 infection of human cells (COVID-19), was initially generated via electronic inference from the manually curated and reviewed Reactome SARS-CoV-1 (Human SARS coronavirus) infection pathway. The inference process created SARS-CoV-2 events corresponding to each event in the SARS-CoV-1 pathway and populated those events with SARS-CoV-2 protein-containing physical entities based on orthology to SARS-CoV-1 proteins (https://reactome.org/documentation/inferred-events). All of these computationally created events and entities have been reviewed by Reactome curators and modified as appropriate where recently published experimental data indicate the existences of differences between the molecular details of the SARS-CoV-1 and SARS-CoV-2 infection pathways.

SARS‑CoV‑2 infection begins with the binding of viral S (spike) protein to cell surface angiotensin converting enzyme 2 (ACE2) and endocytosis of the bound virion. Within the endocytic vesicle, host proteases mediate cleavage of S protein into S1 and S2 fragments, leading to S2‑mediated fusion of the viral and host endosome membranes and release of the viral capsid into the host cell cytosol. The capsid is uncoated to free the viral genomic RNA, whose cap‑dependent translation produces polyprotein pp1a and, by means of a 1‑base frameshift, polyprotein pp1ab. Autoproteolytic cleavage of pp1a and pp1ab generates 15 or 16 nonstructural proteins (nsps) with various functions. Importantly, the RNA dependent RNA polymerase (RdRP) activity is encoded in nsp12. Nsp3, 4, and 6 induce rearrangement of the cellular endoplasmic reticulum membrane to form cytosolic double membrane vesicles (DMVs) where the viral replication transcription complex is assembled and anchored. With viral genomic RNA as a template, viral replicase‑transcriptase synthesizes a full length negative sense antigenome, which in turn serves as a template for the synthesis of new genomic RNA. The replicase‑transcriptase can also switch template during discontinuous transcription of the genome at transcription regulated sequences to produce a nested set of negative‑sense subgenomic (sg) RNAs, which are used as templates for the synthesis of positive‑sense sgRNAs that are translated to generate viral proteins. Finally, viral particle assembly occurs in the ER Golgi intermediate compartment (ERGIC). Viral M protein provides the scaffold for virion morphogenesis (Hartenian et al. 2020; Fung & Liu 2019; Masters 2006).

This Reactome module also describes molecular mechanisms by which SARS-CoV-2 modulates innate and adaptive immune responses, autophagy, host translation, intracellular signaling and regulatory pathways, and PDZ-mediated cell-cell junctions, mostly annotated from studies of cells infected with SARS-CoV-2.

Context

The 2019–20 coronavirus pandemic is an ongoing global pandemic of coronavirus disease 2019 (COVID-19) caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The virus first emerged in Wuhan, Hubei, China, in December 2019. On 11 March 2020, the World Health Organization declared the outbreak a pandemic. As of 11 March 2020, over 126,000 cases have been confirmed in more than 110 countries and territories, with major outbreaks in mainland China, Italy, South Korea, and Iran. More than 4,600 have died from the disease and 67,000 have recovered.

Content

2019 Novel Coronavirus (2019-nCoV) is a virus (more specifically, a coronavirus) identified as the cause of an outbreak of respiratory illness first detected in Wuhan, China. Early on, many of the patients in the outbreak in Wuhan, China reportedly had some link to a large seafood and animal market, suggesting animal-to-person spread. However, a growing number of patients reportedly have not had exposure to animal markets, indicating person-to-person spread is occurring. At this time, it’s unclear how easily or sustainably this virus is spreading between people - CDC

This dataset has information on the number of affected cases, deaths and recovery from 2019 novel coronavirus. Please note that this data was scrapped from https://www.worldometers.info/coronavirus/.This data is solely for education purposes only.

More - Find More Exciting🙀 Datasets Here - An Upvote👍 A Dayᕙ(`▿´)ᕗ , Keeps Aman Hurray Hurray..... ٩(˘◡˘)۶Hehe

Acknowledgements

This data is solely belongs to https://www.worldometers.info/coronavirus/. for licensing visit https://www.worldometers.info/licensing/

This dataset includes CSV files that contain IDs and sentiment scores of the tweets related to the COVID-19 pandemic. The tweets have been collected by an on-going project deployed at https://live.rlamsal.com.np. The model monitors the real-time Twitter feed for coronavirus-related tweets using 90+ different keywords and hashtags that are commonly used while referencing the pandemic. This dataset has been wholly re-designed on March 20, 2020, to comply with the content redistribution policy set by Twitter.The paper associated with this dataset is available here: Design and analysis of a large-scale COVID-19 tweets dataset-------------------------------------Related datasets:(a) Tweets Originating from India During COVID-19 Lockdowns(b) Coronavirus (COVID-19) Tweets Sentiment Trend (Global)-------------------------------------Below is the quick overview of this dataset.— Dataset name: COV19Tweets Dataset— Number of tweets : 857,809,018 tweets— Coverage : Global— Language : English (EN)— Dataset usage terms : By using this dataset, you agree to (i) use the content of this dataset and the data generated from the content of this dataset for non-commercial research only, (ii) remain in compliance with Twitter's Developer Policy and (iii) cite the following paper:Lamsal, R. Design and analysis of a large-scale COVID-19 tweets dataset. Applied Intelligence (2020). https://doi.org/10.1007/s10489-020-02029-z— Geo-tagged Version: Coronavirus (COVID-19) Geo-tagged Tweets Dataset (GeoCOV19Tweets Dataset)— Dataset updates : Everyday— Active keywords and hashtags (archive: keywords.tsv) : "corona", "#corona", "coronavirus", "#coronavirus", "covid", "#covid", "covid19", "#covid19", "covid-19", "#covid-19", "sarscov2", "#sarscov2", "sars cov2", "sars cov 2", "covid_19", "#covid_19", "#ncov", "ncov", "#ncov2019", "ncov2019", "2019-ncov", "#2019-ncov", "pandemic", "#pandemic" "#2019ncov", "2019ncov", "quarantine", "#quarantine", "flatten the curve", "flattening the curve", "#flatteningthecurve", "#flattenthecurve", "hand sanitizer", "#handsanitizer", "#lockdown", "lockdown", "social distancing", "#socialdistancing", "work from home", "#workfromhome", "working from home", "#workingfromhome", "ppe", "n95", "#ppe", "#n95", "#covidiots", "covidiots", "herd immunity", "#herdimmunity", "pneumonia", "#pneumonia", "chinese virus", "#chinesevirus", "wuhan virus", "#wuhanvirus", "kung flu", "#kungflu", "wearamask", "#wearamask", "wear a mask", "vaccine", "vaccines", "#vaccine", "#vaccines", "corona vaccine", "corona vaccines", "#coronavaccine", "#coronavaccines", "face shield", "#faceshield", "face shields", "#faceshields", "health worker", "#healthworker", "health workers", "#healthworkers", "#stayhomestaysafe", "#coronaupdate", "#frontlineheroes", "#coronawarriors", "#homeschool", "#homeschooling", "#hometasking", "#masks4all", "#wfh", "wash ur hands", "wash your hands", "#washurhands", "#washyourhands", "#stayathome", "#stayhome", "#selfisolating", "self isolating"Dataset Files (the local time mentioned below is GMT+5:45)corona_tweets_01.csv + corona_tweets_02.csv + corona_tweets_03.csv: 2,475,980 tweets (March 20, 2020 01:37 AM - March 21, 2020 09:25 AM)corona_tweets_04.csv: 1,233,340 tweets (March 21, 2020 09:27 AM - March 22, 2020 07:46 AM)corona_tweets_05.csv: 1,782,157 tweets (March 22, 2020 07:50 AM - March 23, 2020 09:08 AM)corona_tweets_06.csv: 1,771,295 tweets (March 23, 2020 09:11 AM - March 24, 2020 11:35 AM)corona_tweets_07.csv: 1,479,651 tweets (March 24, 2020 11:42 AM - March 25, 2020 11:43 AM)corona_tweets_08.csv: 1,272,592 tweets (March 25, 2020 11:47 AM - March 26, 2020 12:46 PM)corona_tweets_09.csv: 1,091,429 tweets (March 26, 2020 12:51 PM - March 27, 2020 11:53 AM)corona_tweets_10.csv: 1,172,013 tweets (March 27, 2020 11:56 AM - March 28, 2020 01:59 PM)corona_tweets_11.csv: 1,141,210 tweets (March 28, 2020 02:03 PM - March 29, 2020 04:01 PM)corona_tweets_12.csv: 793,417 tweets (March 30, 2020 02:01 PM - March 31, 2020 10:16 AM)corona_tweets_13.csv: 1,029,294 tweets (March 31, 2020 10:20 AM - April 01, 2020 10:59 AM)corona_tweets_14.csv: 920,076 tweets (April 01, 2020 11:02 AM - April 02, 2020 12:19 PM)corona_tweets_15.csv: 826,271 tweets (April 02, 2020 12:21 PM - April 03, 2020 02:38 PM)corona_tweets_16.csv: 612,512 tweets (April 03, 2020 02:40 PM - April 04, 2020 11:54 AM)corona_tweets_17.csv: 685,560 tweets (April 04, 2020 11:56 AM - April 05, 2020 12:54 PM)corona_tweets_18.csv: 717,301 tweets (April 05, 2020 12:56 PM - April 06, 2020 10:57 AM)corona_tweets_19.csv: 722,921 tweets (April 06, 2020 10:58 AM - April 07, 2020 12:28 PM)corona_tweets_20.csv: 554,012 tweets (April 07, 2020 12:29 PM - April 08, 2020 12:34 PM)corona_tweets_21.csv: 589,679 tweets (April 08, 2020 12:37 PM - April 09, 2020 12:18 PM)corona_tweets_22.csv: 517,718 tweets (April 09, 2020 12:20 PM - April 10, 2020 09:20 AM)corona_tweets_23.csv: 601,199 tweets (April 10, 2020 09:22 AM - April 11, 2020 10:22 AM)corona_tweets_24.csv: 497,655 tweets (April 11, 2020 10:24 AM - April 12, 2020 10:53 AM)corona_tweets_25.csv: 477,182 tweets (April 12, 2020 10:57 AM - April 13, 2020 11:43 AM)corona_tweets_26.csv: 288,277 tweets (April 13, 2020 11:46 AM - April 14, 2020 12:49 AM)corona_tweets_27.csv: 515,739 tweets (April 14, 2020 11:09 AM - April 15, 2020 12:38 PM)corona_tweets_28.csv: 427,088 tweets (April 15, 2020 12:40 PM - April 16, 2020 10:03 AM)corona_tweets_29.csv: 433,368 tweets (April 16, 2020 10:04 AM - April 17, 2020 10:38 AM)corona_tweets_30.csv: 392,847 tweets (April 17, 2020 10:40 AM - April 18, 2020 10:17 AM)> With the addition of some more coronavirus specific keywords, the number of tweets captured day has increased significantly, therefore, the CSV files hereafter will be zipped. Lets save some bandwidth.corona_tweets_31.csv: 2,671,818 tweets (April 18, 2020 10:19 AM - April 19, 2020 09:34 AM)corona_tweets_32.csv: 2,393,006 tweets (April 19, 2020 09:43 AM - April 20, 2020 10:45 AM)corona_tweets_33.csv: 2,227,579 tweets (April 20, 2020 10:56 AM - April 21, 2020 10:47 AM)corona_tweets_34.csv: 2,211,689 tweets (April 21, 2020 10:54 AM - April 22, 2020 10:33 AM)corona_tweets_35.csv: 2,265,189 tweets (April 22, 2020 10:45 AM - April 23, 2020 10:49 AM)corona_tweets_36.csv: 2,201,138 tweets (April 23, 2020 11:08 AM - April 24, 2020 10:39 AM)corona_tweets_37.csv: 2,338,713 tweets (April 24, 2020 10:51 AM - April 25, 2020 11:50 AM)corona_tweets_38.csv: 1,981,835 tweets (April 25, 2020 12:20 PM - April 26, 2020 09:13 AM)corona_tweets_39.csv: 2,348,827 tweets (April 26, 2020 09:16 AM - April 27, 2020 10:21 AM)corona_tweets_40.csv: 2,212,216 tweets (April 27, 2020 10:33 AM - April 28, 2020 10:09 AM)corona_tweets_41.csv: 2,118,853 tweets (April 28, 2020 10:20 AM - April 29, 2020 08:48 AM)corona_tweets_42.csv: 2,390,703 tweets (April 29, 2020 09:09 AM - April 30, 2020 10:33 AM)corona_tweets_43.csv: 2,184,439 tweets (April 30, 2020 10:53 AM - May 01, 2020 10:18 AM)corona_tweets_44.csv: 2,223,013 tweets (May 01, 2020 10:23 AM - May 02, 2020 09:54 AM)corona_tweets_45.csv: 2,216,553 tweets (May 02, 2020 10:18 AM - May 03, 2020 09:57 AM)corona_tweets_46.csv: 2,266,373 tweets (May 03, 2020 10:09 AM - May 04, 2020 10:17 AM)corona_tweets_47.csv: 2,227,489 tweets (May 04, 2020 10:32 AM - May 05, 2020 10:17 AM)corona_tweets_48.csv: 2,218,774 tweets (May 05, 2020 10:38 AM - May 06, 2020 10:26 AM)corona_tweets_49.csv: 2,164,251 tweets (May 06, 2020 10:35 AM - May 07, 2020 09:33 AM)corona_tweets_50.csv: 2,203,686 tweets (May 07, 2020 09:55 AM - May 08, 2020 09:35 AM)corona_tweets_51.csv: 2,250,019 tweets (May 08, 2020 09:39 AM - May 09, 2020 09:49 AM)corona_tweets_52.csv: 2,273,705 tweets (May 09, 2020 09:55 AM - May 10, 2020 10:11 AM)corona_tweets_53.csv: 2,208,264 tweets (May 10, 2020 10:23 AM - May 11, 2020 09:57 AM)corona_tweets_54.csv: 2,216,845 tweets (May 11, 2020 10:08 AM - May 12, 2020 09:52 AM)corona_tweets_55.csv: 2,264,472 tweets (May 12, 2020 09:59 AM - May 13, 2020 10:14 AM)corona_tweets_56.csv: 2,339,709 tweets (May 13, 2020 10:24 AM - May 14, 2020 11:21 AM)corona_tweets_57.csv: 2,096,878 tweets (May 14, 2020 11:38 AM - May 15, 2020 09:58 AM)corona_tweets_58.csv: 2,214,205 tweets (May 15, 2020 10:13 AM - May 16, 2020 09:43 AM)> The server and the databases have been optimized; therefore, there is a significant rise in the number of tweets captured per day.corona_tweets_59.csv: 3,389,090 tweets (May 16, 2020 09:58 AM - May 17, 2020 10:34 AM)corona_tweets_60.csv: 3,530,933 tweets (May 17, 2020 10:36 AM - May 18, 2020 10:07 AM)corona_tweets_61.csv: 3,899,631 tweets (May 18, 2020 10:08 AM - May 19, 2020 10:07 AM)corona_tweets_62.csv: 3,767,009 tweets (May 19, 2020 10:08 AM - May 20, 2020 10:06 AM)corona_tweets_63.csv: 3,790,455 tweets (May 20, 2020 10:06 AM - May 21, 2020 10:15 AM)corona_tweets_64.csv: 3,582,020 tweets (May 21, 2020 10:16 AM - May 22, 2020 10:13 AM)corona_tweets_65.csv: 3,461,470 tweets (May 22, 2020 10:14 AM - May 23, 2020 10:08 AM)corona_tweets_66.csv: 3,477,564 tweets (May 23, 2020 10:08 AM - May 24, 2020 10:02 AM)corona_tweets_67.csv: 3,656,446 tweets (May 24, 2020 10:02 AM - May 25, 2020 10:10 AM)corona_tweets_68.csv: 3,474,952 tweets (May 25, 2020 10:11 AM - May 26, 2020 10:22 AM)corona_tweets_69.csv: 3,422,960 tweets (May 26, 2020 10:22 AM - May 27, 2020 10:16 AM)corona_tweets_70.csv: 3,480,999 tweets (May 27, 2020 10:17 AM - May 28, 2020 10:35 AM)corona_tweets_71.csv: 3,446,008 tweets (May 28, 2020 10:36 AM - May 29, 2020 10:07 AM)corona_tweets_72.csv: 3,492,841 tweets (May 29, 2020 10:07 AM - May 30, 2020 10:14 AM)corona_tweets_73.csv: 3,098,817 tweets (May 30, 2020 10:15 AM - May 31, 2020 10:13 AM)corona_tweets_74.csv: 3,234,848 tweets (May 31, 2020 10:13 AM - June 01, 2020 10:14 AM)corona_tweets_75.csv: 3,206,132 tweets (June 01, 2020 10:15 AM - June 02, 2020 10:07 AM)corona_tweets_76.csv: 3,206,417 tweets (June 02, 2020 10:08 AM - June 03, 2020 10:26 AM)corona_tweets_77.csv: 3,256,225 tweets (June 03, 2020

Note: Reporting of new COVID-19 Case Surveillance data will be discontinued July 1, 2024, to align with the process of removing SARS-CoV-2 infections (COVID-19 cases) from the list of nationally notifiable diseases. Although these data will continue to be publicly available, the dataset will no longer be updated.

Authorizations to collect certain public health data expired at the end of the U.S. public health emergency declaration on May 11, 2023. The following jurisdictions discontinued COVID-19 case notifications to CDC: Iowa (11/8/21), Kansas (5/12/23), Kentucky (1/1/24), Louisiana (10/31/23), New Hampshire (5/23/23), and Oklahoma (5/2/23). Please note that these jurisdictions will not routinely send new case data after the dates indicated. As of 7/13/23, case notifications from Oregon will only include pediatric cases resulting in death.

This case surveillance public use dataset has 19 elements for all COVID-19 cases shared with CDC and includes demographics, geography (county and state of residence), any exposure history, disease severity indicators and outcomes, and presence of any underlying medical conditions and risk behaviors.

Currently, CDC provides the public with three versions of COVID-19 case surveillance line-listed data: this 19 data element dataset with geography, a 12 data element public use dataset, and a 33 data element restricted access dataset.

The following apply to the public use datasets and the restricted access dataset:

• Data elements can be found on the COVID-19 case report form located at www.cdc.gov/coronavirus/2019-ncov/downloads/pui-form.pdf.
• Data are considered provisional by CDC and are subject to change until the data are reconciled and verified with the state and territorial data providers.
• Some data are suppressed to protect individual privacy.
• Datasets will include all cases with the earliest date available in each record (date received by CDC or date related to illness/specimen collection) at least 14 days prior to the creation of the current datasets. This 14-day lag allows case reporting to be stabilized and ensure that time-dependent outcome data are accurately captured.
• Datasets are updated monthly.
• Datasets are created using CDC’s Policy on Public Health Research and Nonresearch Data Management and Access and include protections designed to protect individual privacy.
• For more information about data collection and reporting, please see https://www.cdc.gov/coronavirus/2019-ncov/covid-data/about-us-cases-deaths.html.
• For more information about the COVID-19 case surveillance data, please see https://www.cdc.gov/coronavirus/2019-ncov/covid-data/faq-surveillance.html
  

Overview

The COVID-19 case surveillance database includes individual-level data reported to U.S. states and autonomous reporting entities, including New York City and the District of Columbia (D.C.), as well as U.S. territories and affiliates. On April 5, 2020, COVID-19 was added to the Nationally Notifiable Condition List and classified as “immediately notifiable, urgent (within 24 hours)” by a Council of State and Territorial Epidemiologists (CSTE) Interim Position Statement (<a href="https://cdn.ymaws.com/www.cste.org/resource/resmgr/ps/positionstatement2020/Interim-20-ID-01_COVID

Context

This repository contains several COVID-19 full genome sequences collected from the NIH database site: https://www.ncbi.nlm.nih.gov/genbank/sars-cov-2-seqs/.

The aim of this repository is not to be a complete duplicate of the NIH one, but to give a simple flavor of what the genomic datasets for this virus look like.

Context

The 2019–20 coronavirus pandemic is an ongoing global pandemic of coronavirus disease 2019 (COVID-19) caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The virus first emerged in Wuhan, Hubei, China, in December 2019. On 11 March 2020, the World Health Organization declared the outbreak a pandemic. As of 11 March 2020, over 126,000 cases have been confirmed in more than 110 countries and territories, with major outbreaks in mainland China, Italy, South Korea, and Iran. More than 4,600 have died from the disease and 67,000 have recovered.

Content

2019 Novel Coronavirus (2019-nCoV) is a virus (more specifically, a coronavirus) identified as the cause of an outbreak of respiratory illness first detected in Wuhan, China. Early on, many of the patients in the outbreak in Wuhan, China reportedly had some link to a large seafood and animal market, suggesting animal-to-person spread. However, a growing number of patients reportedly have not had exposure to animal markets, indicating person-to-person spread is occurring. At this time, it’s unclear how easily or sustainably this virus is spreading between people - CDC

This dataset has information on the number of affected cases, deaths and recovery from 2019 novel coronavirus. Please note that this data was scrapped from https://www.worldometers.info/coronavirus/.This data is solely for education purposes only.

Acknowledgements

This data is solely belongs to https://www.worldometers.info/coronavirus/. for licensing visit https://www.worldometers.info/licensing/

Context

What Is COVID-19?

A coronavirus is a kind of common virus that causes an infection in your nose, sinuses, or upper throat. Most coronaviruses aren't dangerous.

COVID-19 is a disease that can cause what doctors call a respiratory tract infection. It can affect your upper respiratory tract (sinuses, nose, and throat) or lower respiratory tract (windpipe and lungs). It's caused by a coronavirus named SARS-CoV-2.

It spreads the same way other coronaviruses do, mainly through person-to-person contact. Infections range from mild to serious.

SARS-CoV-2 is one of seven types of coronavirus, including the ones that cause severe diseases like Middle East respiratory syndrome (MERS) and sudden acute respiratory syndrome (SARS). The other coronaviruses cause most of the colds that affect us during the year but aren’t a serious threat for otherwise healthy people.

In early 2020, after a December 2019 outbreak in China, the World Health Organization identified SARS-CoV-2 as a new type of coronavirus. The outbreak quickly spread around the world.

Is there more than one strain of SARS-CoV-2?

It’s normal for a virus to change, or mutate, as it infects people. A Chinese study of 103 COVID-19 cases suggests the virus that causes it has done just that. They found two strains, which they named L and S. The S type is older, but the L type was more common in early stages of the outbreak. They think one may cause more cases of the disease than the other, but they’re still working on what it all means.

How long will the coronavirus last?

It’s too soon to tell how long the pandemic will continue. It depends on many things, including researchers’ work to learn more about the virus, their search for a treatment and a vaccine, and the public’s efforts to slow the spread.

Dozens of vaccine candidates are in various stages of development and testing. This process usually takes years. Researchers are speeding it up as much as they can, but it still might take 12 to 18 months to find a vaccine that works and is safe.

Symptoms of COVID-19

The main symptoms include:

• Fever
• Coughing
• Shortness of breath
• Fatigue
• Chills, sometimes with shaking
• Body aches
• Headache
• Sore throat
• Loss of smell or taste
• Nausea
• Diarrhea

The virus can lead to pneumonia, respiratory failure, septic shock, and death. Many COVID-19 complications may be caused by a condition known as cytokine release syndrome or a cytokine storm. This is when an infection triggers your immune system to flood your bloodstream with inflammatory proteins called cytokines. They can kill tissue and damage your organs.

STAY HOME. STAY SAFE !

Content

ALL DATASETS HAVE BEEN CLEANED FOR DIRECT USE.

Total_World_covid-19.csv : This dataset contains the worldwide data country-wise such as total cases , total active, deaths, etc. along with testing data.

Total_India_covid-19.csv : This dataset contains India level data statewise such as confirmed cases , active cases, deaths, etc.

Total_US_covid-19.csv : This dataset contains India level data statewise such as confirmed cases , active cases, deaths, etc.

Daily_States_India.csv : This dataset contains daily statewise data of India such as daily confirmed , daily active , daily deaths and daily recovered.

Total_Maharshtra_covid-19.csv : This dataset contains Maharashtra's district wise data such as confirmed cases , active cases, deaths, etc.

Acknowledgements

1. World and US data has been collected from Worldometer . Thanks a lot.

2. India and State level along with Maharashtra district data has been collected from Covid19India. Special thanks to them for providing updated and such wonderful data .

Inspiration

1) What has been the Covid-19 trend across the world, Is it declining? Is it increasing? 2) Which countries have been able to sustain and control the virus spread? 3) How is India coping up with the virus? Have they been able to control it at the given cost of 2 months nationwide lockdown?

On 27 February 2020, the first case of COVID-19 disease was confirmed in The Netherlands by RIVM (National Institute for Public Health and the Environment). In the weeks after, thousands of people were diagnosed with the infectious disease. Data on COVID-19 case counts are important for research and applications on various topics like epidemiology and statistics.

This dataset contains reported case counts derived from official sources like RIVM (National Institute for Public Health and the Environment), LCPS (National Coordination Center for Patient Distribution), and NICE (National Intensive Care Evaluation). Data from these sources are collected, standardized, and published in various formats on a daily basis.

The README document in this repository provides an overview of the available datasets, their file location(s), and codebooks. Copies of the original data are stored in the folder named 'raw_data'. Scripts to process the raw data into standardized files can be found in the folder workflows.

ABSTRACT Background : The Covid-19 pandemic associated with the SARS-CoV-2 has caused very high death tolls in many countries, while it has had less prevalence in other countries of Africa and Asia. Climate and geographic conditions, as well as other epidemiologic and demographic conditions, were a matter of debate on whether or not they could have an effect on the prevalence of Covid-19. Objective : In the present work, we sought a possible relevance of the geographic location of a given country on its Covid-19 prevalence. On the other hand, we sought a possible relation between the history of epidemiologic and demographic conditions of the populations and the prevalence of Covid-19 across four continents (America, Europe, Africa, and Asia). We also searched for a possible impact of pre-pandemic alcohol consumption in each country on the two year death tolls across the four continents. Methods : We have sought the death toll caused by Covid-19 in 39 countries and obtained the registered deaths from specialized web pages. For every country in the study, we have analysed the correlation of the Covid-19 death numbers with its geographic latitude, and its associated climate conditions, such as the mean annual temperature, the average annual sunshine hours, and the average annual UV index. We also analyzed the correlation of the Covid-19 death numbers with epidemiologic conditions such as cancer score and Alzheimer score, and with demographic parameters such as birth rate, mortality rate, fertility rate, and the percentage of people aged 65 and above. In regard to consumption habits, we searched for a possible relation between alcohol intake levels per capita and the Covid-19 death numbers in each country. Correlation factors and determination factors, as well as analyses by simple linear regression and polynomial regression, were calculated or obtained by Microsoft Exell software (2016). Results : In the present study, higher numbers of deaths related to Covid-19 pandemic were registered in many countries in Europe and America compared to other countries in Africa and Asia. The analysis by polynomial regression generated an inverted bell-shaped curve and a significant correlation between the Covid-19 death numbers and the geographic latitude of each country in our study. Higher death numbers were registered in the higher geographic latitudes of both hemispheres, while lower scores of deaths were registered in countries located around the equator line. In a bell shaped curve, the latitude levels were negatively correlated to the average annual levels (last 10 years) of temperatures, sunshine hours, and UV index of each country, with the highest scores of each climate parameter being registered around the equator line, while lower levels of temperature, sunshine hours, and UV index were registered in higher latitude countries. In addition, the linear regression analysis showed that the Covid-19 death numbers registered in the 39 countries of our study were negatively correlated with the three climate factors of our study, with the temperature as the main negatively correlated factor with Covid-19 deaths. On the other hand, cancer and Alzheimer's disease scores, as well as advanced age and alcohol intake, were positively correlated to Covid-19 deaths, and inverted bell-shaped curves were obtained when expressing the above parameters against a country’s latitude. Instead, the (birth rate/mortality rate) ratio and fertility rate were negatively correlated to Covid-19 deaths, and their values gave bell-shaped curves when expressed against a country’s latitude. Conclusion : The results of the present study prove that the climate parameters and history of epidemiologic and demographic conditions as well as nutrition habits are very correlated with Covid-19 prevalence. The results of the present study prove that low levels of temperature, sunshine hours, and UV index, as well as negative epidemiologic and demographic conditions and high scores of alcohol intake may worsen Covid-19 prevalence in many countries of the northern hemisphere, and this phenomenon could explain their high Covid-19 death tolls. Keywords : Covid-19, Coronavirus, SARS-CoV-2, climate, temperature, sunshine hours, UV index, cancer, Alzheimer disease, alcohol.

COVID-19, coronavirus disease 2019; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2. (XLSX)

The aim of the special survey of the GESIS panel on the outbreak of the corona virus SARS-CoV-2 in Germany was to collect timely data on the effects of the corona crisis on people´s daily lives. The study focused on questions of risk perception, risk minimization measures, evaluation of political measures and their compliance, trust in politics and institutions, changed employment situation, childcare obligations, and media consumption. Due to the need for timely data collection, only the GESIS panel sub-sample of online respondents was invited (about three quarters of the sample). Since, due to time constraints, respondents could only participate in the online survey but not by mail, the results cannot be easily transferred to the overall population. Further longitudinal surveys on Covid-19 with the entire sample of the GESIS panel are planned for 2020.

Topics: Risk perception: Probability of events related to corona infection in the next two months (self, infection of a person from close social surrondings, hospital treatment, quarantine measures regardless of whether infected or not, infecting other people)

Risk minimization: risk minimization measures taken in the last seven days (avoided certain (busy) places, kept minimum distance to other people, adapted school or work situation, quarantine due to symptoms or without symptoms, washed hands more often, used disinfectant, stocks increased, reduced social interactions, worn face mask, other, none of these measures).

Evaluation of the effectiveness of various policy measures to combat the further spread of corona virus (closure of day-care centres, kindergartens and schools, closure of sports facilities, closure of bars, cafés and restaurants, closure of all shops except supermarkets and pharmacies, ban on visiting hospitals, nursing homes and old people´s homes, curfew for persons aged 70 and over or people with health problems or for anyone not working in the health sector or other critical professions (except for basic purchases and urgent medical care).

Curfew compliance or refusal: Willingness to obey a curfew vs. refusal; reasons for the compliance with curfew (social duty, fear of punishment, protection against infection, fear of infecting others (loved ones, infecting others in general, a risk group); reasons for refusal of curfew (restrictions too drastic or not justified, other obligations, does not stop the spread, not affected by the outbreak, boring at home, will not be punished).

Evaluation of the effectiveness of various government measures (medical care, restrictions on social life such as closure of public facilities and businesses, reduction of economic damage, communication with the population).

Trust in politics and institutions with regard to dealing with the coronavirus (physician, local health authority, local and municipal administration, Robert Koch Institute (RKI), Federal Government, German Chancellor, Ministry of Health, World Health Organization (WHO), scientists).

Changed employment situation: employment status at the beginning of March; change in occupational situation since the spread of coronavirus: dependent employees: number of hours reduced, number of hours increased, more home office, leave of absence with/ without continued wage payment , fired, no change; self-employed: working hours reduced, working hours increased, more home office, revenue decreased, revenue increased, company temporarily closed by the authorities, company temporarily voluntarily closed, financial hardship, company permanently closed or insolvent, no change.

Childcare: children under 12 in the household; organisation of childcare during the closure of day-care centres, kindergartens and schools (staying at home, partner stays at home, older siblings take care, grandparents are watching, etc.)

Media consumption on Corona: information sources used for Corona (e.g. nationwide public or private television or radio, local public or private television or radio, national newspapers or local newspapers, Facebook, other social media, personal conversations with friends and family, other, do not inform myself on the subject); frequency of Facebook usage; information about Corona obtained from regional Facebook page or regional Facebook group.

Demography: sex; age (categorized); education (categorized); intention to vote and choice of party (Sunday question); Left-right self-assessment; marital status; size of household.

Additionally coded: Respondent ID;...

Reporting of new Aggregate Case and Death Count data was discontinued May 11, 2023, with the expiration of the COVID-19 public health emergency declaration. This dataset will receive a final update on June 1, 2023, to reconcile historical data through May 10, 2023, and will remain publicly available.

Aggregate Data Collection Process Since the start of the COVID-19 pandemic, data have been gathered through a robust process with the following steps:

• A CDC data team reviews and validates the information obtained from jurisdictions’ state and local websites via an overnight data review process.
• If more than one official county data source exists, CDC uses a comprehensive data selection process comparing each official county data source, and takes the highest case and death counts respectively, unless otherwise specified by the state.
• CDC compiles these data and posts the finalized information on COVID Data Tracker.
• County level data is aggregated to obtain state and territory specific totals.

This process is collaborative, with CDC and jurisdictions working together to ensure the accuracy of COVID-19 case and death numbers. County counts provide the most up-to-date numbers on cases and deaths by report date. CDC may retrospectively update counts to correct data quality issues.

Methodology Changes Several differences exist between the current, weekly-updated dataset and the archived version:

• Source: The current Weekly-Updated Version is based on county-level aggregate count data, while the Archived Version is based on State-level aggregate count data.
• Confirmed/Probable Cases/Death breakdown:  While the probable cases and deaths are included in the total case and total death counts in both versions (if applicable), they were reported separately from the confirmed cases and deaths by jurisdiction in the Archived Version.  In the current Weekly-Updated Version, the counts by jurisdiction are not reported by confirmed or probable status (See Confirmed and Probable Counts section for more detail).
• Time Series Frequency: The current Weekly-Updated Version contains weekly time series data (i.e., one record per week per jurisdiction), while the Archived Version contains daily time series data (i.e., one record per day per jurisdiction).
• Update Frequency: The current Weekly-Updated Version is updated weekly, while the Archived Version was updated twice daily up to October 20, 2022.

Important note: The counts reflected during a given time period in this dataset may not match the counts reflected for the same time period in the archived dataset noted above. Discrepancies may exist due to differences between county and state COVID-19 case surveillance and reconciliation efforts.

Confirmed and Probable Counts In this dataset, counts by jurisdiction are not displayed by confirmed or probable status. Instead, confirmed and probable cases and deaths are included in the Total Cases and Total Deaths columns, when available. Not all jurisdictions report probable cases and deaths to CDC.* Confirmed and probable case definition criteria are described here:

Council of State and Territorial Epidemiologists (ymaws.com).

Deaths CDC reports death data on other sections of the website: CDC COVID Data Tracker: Home, CDC COVID Data Tracker: Cases, Deaths, and Testing, and NCHS Provisional Death Counts. Information presented on the COVID Data Tracker pages is based on the same source (total case counts) as the present dataset; however, NCHS Death Counts are based on death certificates that use information reported by physicians, medical examiners, or coroners in the cause-of-death section of each certificate. Data from each of these pages are considered provisional (not complete and pending verification) and are therefore subject to change. Counts from previous weeks are continually revised as more records are received and processed.

Number of Jurisdictions Reporting There are currently 60 public health jurisdictions reporting cases of COVID-19. This includes the 50 states, the District of Columbia, New York City, the U.S. territories of American Samoa, Guam, the Commonwealth of the Northern Mariana Islands, Puerto Rico, and the U.S Virgin Islands as well as three independent countries in compacts of free association with the United States, Federated States of Micronesia, Republic of the Marshall Islands, and Republic of Palau. New York State’s reported case and death counts do not include New York City’s counts as they separately report nationally notifiable conditions to CDC.

CDC COVID-19 data are available to the public as summary or aggregate count files, including total counts of cases and deaths, available by state and by county. These and other data on COVID-19 are available from multiple public locations, such as:

https://www.cdc.gov/coronavirus/2019-ncov/cases-updates/cases-in-us.html

https://www.cdc.gov/covid-data-tracker/index.html

https://www.cdc.gov/coronavirus/2019-ncov/covid-data/covidview/index.html

https://www.cdc.gov/coronavirus/2019-ncov/php/open-america/surveillance-data-analytics.html

Additional COVID-19 public use datasets, include line-level (patient-level) data, are available at: https://data.cdc.gov/browse?tags=covid-19.

Archived Data Notes:

November 3, 2022: Due to a reporting cadence issue, case rates for Missouri counties are calculated based on 11 days’ worth of case count data in the Weekly United States COVID-19 Cases and Deaths by State data released on November 3, 2022, instead of the customary 7 days’ worth of data.

November 10, 2022: Due to a reporting cadence change, case rates for Alabama counties are calculated based on 13 days’ worth of case count data in the Weekly United States COVID-19 Cases and Deaths by State data released on November 10, 2022, instead of the customary 7 days’ worth of data.

November 10, 2022: Per the request of the jurisdiction, cases and deaths among non-residents have been removed from all Hawaii county totals throughout the entire time series. Cumulative case and death counts reported by CDC will no longer match Hawaii’s COVID-19 Dashboard, which still includes non-resident cases and deaths. 

November 17, 2022: Two new columns, weekly historic cases and weekly historic deaths, were added to this dataset on November 17, 2022. These columns reflect case and death counts that were reported that week but were historical in nature and not reflective of the current burden within the jurisdiction. These historical cases and deaths are not included in the new weekly case and new weekly death columns; however, they are reflected in the cumulative totals provided for each jurisdiction. These data are used to account for artificial increases in case and death totals due to batched reporting of historical data.

December 1, 2022: Due to cadence changes over the Thanksgiving holiday, case rates for all Ohio counties are reported as 0 in the data released on December 1, 2022.

January 5, 2023: Due to North Carolina’s holiday reporting cadence, aggregate case and death data will contain 14 days’ worth of data instead of the customary 7 days. As a result, case and death metrics will appear higher than expected in the January 5, 2023, weekly release.

January 12, 2023: Due to data processing delays, Mississippi’s aggregate case and death data will be reported as 0. As a result, case and death metrics will appear lower than expected in the January 12, 2023, weekly release.

January 19, 2023: Due to a reporting cadence issue, Mississippi’s aggregate case and death data will be calculated based on 14 days’ worth of data instead of the customary 7 days in the January 19, 2023, weekly release.

January 26, 2023: Due to a reporting backlog of historic COVID-19 cases, case rates for two Michigan counties (Livingston and Washtenaw) were higher than expected in the January 19, 2023 weekly release.

January 26, 2023: Due to a backlog of historic COVID-19 cases being reported this week, aggregate case and death counts in Charlotte County and Sarasota County, Florida, will appear higher than expected in the January 26, 2023 weekly release.

January 26, 2023: Due to data processing delays, Mississippi’s aggregate case and death data will be reported as 0 in the weekly release posted on January 26, 2023.

February 2, 2023: As of the data collection deadline, CDC observed an abnormally large increase in aggregate COVID-19 cases and deaths reported for Washington State. In response, totals for new cases and new deaths released on February 2, 2023, have been displayed as zero at the state level until the issue is addressed with state officials. CDC is working with state officials to address the issue.

February 2, 2023: Due to a decrease reported in cumulative case counts by Wyoming, case rates will be reported as 0 in the February 2, 2023, weekly release. CDC is working with state officials to verify the data submitted.

February 16, 2023: Due to data processing delays, Utah’s aggregate case and death data will be reported as 0 in the weekly release posted on February 16, 2023. As a result, case and death metrics will appear lower than expected and should be interpreted with caution.

February 16, 2023: Due to a reporting cadence change, Maine’s