This is a pickle file, ready for training by the neural network described in "Improving CDR-H3 modelling in Antibodies" found at the following URL:

https://github.com/OniDaito/MRes

The data is derived from the AbDb dataset found at:

http://www.bioinf.org.uk/abs/abdb/

Reproducibility data for the AntiBody Sequence Database (ABSD) article. This dataset contains the raw data (antibody sequences) extracted on June 20, 2024, from various databases, as well as the several scripts, to ensure the reproducibility of our results. External databases used: ABDB, AbPDB, CoV-AbDab, Genbank, IMGT, PDB, SACS, SAbDab, TheraSAbDab, UniProt, KABAT Scripts usage: each external database has a corresponding script to format all antibody sequences extracted from it. A last script enable merging all extracted antibody sequences while removing redundancy, standardizing and cleaning data.

starfishdata/project-Wendaodemodataset2-b8e30091-abdb-4743-b063-5cdc07cc838e dataset hosted on Hugging Face and contributed by the HF Datasets community

The main entity of this document is a structure with accession number 5zjq

This training survey in Geological Exploration took place on board the Marine Institute's R.V. Celtic Voyager in Cork Harbour. Three instructors delivered 6 days of training to postgraduate and undergraduate students from University College Cork (UCC) from the 24th to 29th of November 2017. These training surveys arise from a learning module in multidisciplinary offshore marine science developed by the Strategic Marine Alliance for Research and Training (SMART) in 2011 . The objective of this SMART UCC training programme was to provide offshore training for Geology and Earth and Environmental Science undergraduates and Exploration Field Geology postgraduates in offshore geoscience. Overall, the training provided practical training in: • seabed mapping techniques and practice; • seabed sampling techniques and practice; • sub-seabed imaging techniques and practice; • offshore geological data collection; • evaluation of resource and resource assessment.

Explore the historical Whois records related to abdb.us (Domain). Get insights into ownership history and changes over time.

AsEP is a protein structure dataset that includes 1723 filtered antibody-antigen complexes from abYbank/AbDb.

It is designed to facilitate the development of machine-learning-based models for predicting antibody-specific epitopes given a pair of antibody and antigen structures as input, which is important for antibody engineering. The dataset also introduces a new task for predicting the interacting residue pairs between antibodies and antigens, which is useful for understanding the functional properties of antibodies and enhances the interpretability of model performance.

Please refer to this GitHub repository AsEP-dataset for the dataset interface, which is built with Python and PyTorch-Geometric Dataset Module.

Protein-Protein, Genetic, and Chemical Interactions for Ghosh N (2019):The Hox gene Abdominal-B uses DoublesexF as a cofactor to promote neuroblast apoptosis in the Drosophila central nervous system. curated by BioGRID (https://thebiogrid.org); ABSTRACT: Highly conserved DM domain-containing transcription factors (Doublesex/MAB-3/DMRT1) are responsible for generating sexually dimorphic features. In the Drosophila central nervous system, a set of Doublesex (Dsx)-expressing neuroblasts undergo apoptosis in females whereas their male counterparts proliferate and give rise to serotonergic neurons crucial for adult mating behaviour. Our study demonstrates that the female-specific isoform of Dsx collaborates with Hox gene Abdominal-B (Abd-B) to bring about this apoptosis. Biochemical results suggest that proteins AbdB and Dsx interact through their highly conserved homeodomain and DM domain, respectively. This interaction is translated into a cooperative binding of the two proteins on the apoptotic enhancer in the case of females but not in the case of males, resulting in female-specific activation of apoptotic genes. The capacity of AbdB to use the sex-specific isoform of Dsx as a cofactor underlines the possibility that these two classes of protein are capable of cooperating in selection and regulation of target genes in a tissue- and sex-specific manner. We propose that this interaction could be a common theme in generating sexual dimorphism in different tissues across different species.