10 datasets found
  1. Global Parkinson's Genetics Program Data Release 5

    • zenodo.org
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    Updated Jul 12, 2024
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    Hampton Leonard; Hampton Leonard; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang (2024). Global Parkinson's Genetics Program Data Release 5 [Dataset]. http://doi.org/10.5281/zenodo.7904832
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    pdfAvailable download formats
    Dataset updated
    Jul 12, 2024
    Dataset provided by
    Zenodohttp://zenodo.org/
    Authors
    Hampton Leonard; Hampton Leonard; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    In May 2023, GP2 announced the fifth data release on the Terra platform in collaboration with AMP® PD.

    This release includes 7,462 additional new complex disease participants and 487 new monogenic disease participants, adding to the previous releases from the Complex and Monogenic Networks.

    • The complex disease data (genotypes) now consists of a total of 24,935 genotyped participants (12,728 PD cases, 10,533 Controls, and 1,674 ‘Other’ phenotypes).
    • The monogenic disease data (whole genome sequences) now consists of a total of 722 sequenced participants.

    Please see the accompanying blog for further description of this release. To obtain data access, please see https://amp-pd.org/researchers/data-use-agreement. For any publications using data from this release, please reference the DOI number and the following statement: "Data (DOI 10.5281/zenodo.7904832, release 5) used in the preparation of this article were obtained from the Global Parkinson’s Genetics Program (GP2)."

  2. f

    An Efficient and Versatile System for Visualization and Genetic Modification...

    • plos.figshare.com
    tiff
    Updated Jun 1, 2023
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    Karsten Tillack; Helia Aboutalebi; Edgar R. Kramer (2023). An Efficient and Versatile System for Visualization and Genetic Modification of Dopaminergic Neurons in Transgenic Mice [Dataset]. http://doi.org/10.1371/journal.pone.0136203
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    tiffAvailable download formats
    Dataset updated
    Jun 1, 2023
    Dataset provided by
    PLOS ONE
    Authors
    Karsten Tillack; Helia Aboutalebi; Edgar R. Kramer
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Background & AimsThe brain dopaminergic (DA) system is involved in fine tuning many behaviors and several human diseases are associated with pathological alterations of the DA system such as Parkinson’s disease (PD) and drug addiction. Because of its complex network integration, detailed analyses of physiological and pathophysiological conditions are only possible in a whole organism with a sophisticated tool box for visualization and functional modification.Methods & ResultsHere, we have generated transgenic mice expressing the tetracycline-regulated transactivator (tTA) or the reverse tetracycline-regulated transactivator (rtTA) under control of the tyrosine hydroxylase (TH) promoter, TH-tTA (tet-OFF) and TH-rtTA (tet-ON) mice, to visualize and genetically modify DA neurons. We show their tight regulation and efficient use to overexpress proteins under the control of tet-responsive elements or to delete genes of interest with tet-responsive Cre. In combination with mice encoding tet-responsive luciferase, we visualized the DA system in living mice progressively over time.ConclusionThese experiments establish TH-tTA and TH-rtTA mice as a powerful tool to generate and monitor mouse models for DA system diseases.

  3. Global Parkinson's Genetics Program Data Release 9

    • zenodo.org
    Updated Dec 18, 2024
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    Hampton Leonard; Hampton Leonard; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang; Lietsel Jones; J Solle; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang; Lietsel Jones; J Solle (2024). Global Parkinson's Genetics Program Data Release 9 [Dataset]. http://doi.org/10.5281/zenodo.14510099
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    Dataset updated
    Dec 18, 2024
    Dataset provided by
    Zenodohttp://zenodo.org/
    Authors
    Hampton Leonard; Hampton Leonard; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang; Lietsel Jones; J Solle; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang; Lietsel Jones; J Solle
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    In December 2024, GP2 announced the 9th data release on the Terra and the Verily® Workbench platforms in collaboration with AMP® PD. This release includes 17,690 additional genotyped participants.

    • The genotype array data, including locally-restricted samples, now consists of a total of 71,835 genotyped participants (31,985 PD cases, 18,249 Controls, and 21,601 ‘Other’ phenotypes)
      • When removing the locally-restricted samples, these now consist of 55,305 samples (23,709 PD cases, 13,404 Controls, and 18,192 ‘Other’ phenotypes)
    • Of those 71,835 samples with genotyped data:
      • 16,800 individuals also have deep clinical phenotyping information (Release 8)
      • 10,454 total individuals also have clinical exomes information (Release 8)
      • 7,732 total individuals also have WGS data (Release 8)

    Please see the accompanying blog for further description of this release. To obtain data access, please see https://amp-pd.org/researchers/data-use-agreement. For any publications using data from this release, please reference the DOI number and the following statement: "Data (DOI 10.5281/zenodo.14510099, release 9) and/or code used in the preparation of this article were obtained from Global Parkinson’s Genetics Program (GP2). GP2 is funded by the Aligning Science Across Parkinson’s (ASAP) initiative and implemented by The Michael J. Fox Foundation for Parkinson’s Research (https://gp2.org). For a complete list of GP2 members see https://gp2.org."

  4. f

    Data from: PLK2 disrupts autophagic flux to promote SNCA/α-synuclein...

    • tandf.figshare.com
    docx
    Updated May 12, 2025
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    Chuang Zhang; Zhanpeng Huang; Xinyue Huang; Yanni Ma; Yifan Cao; Zhixiong Zhang; Rui Wang; Haigang Ren; Longtai Zheng; Chun-Feng Liu; Guanghui Wang (2025). PLK2 disrupts autophagic flux to promote SNCA/α-synuclein pathology [Dataset]. http://doi.org/10.6084/m9.figshare.28163331.v1
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    docxAvailable download formats
    Dataset updated
    May 12, 2025
    Dataset provided by
    Taylor & Francis
    Authors
    Chuang Zhang; Zhanpeng Huang; Xinyue Huang; Yanni Ma; Yifan Cao; Zhixiong Zhang; Rui Wang; Haigang Ren; Longtai Zheng; Chun-Feng Liu; Guanghui Wang
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    The aggregation and transmission of SNCA/α-synuclein (synuclein, alpha) is a hallmark pathology of Parkinson disease (PD). PLK2 (polo like kinase 2) is an evolutionarily conserved serine/threonine kinase that is more abundant in the brains of all family members, is highly expressed in PD, and is linked to SNCA deposition. However, in addition to its role in phosphorylating SNCA, the role of PLK2 in PD and the mechanisms involved in triggering neurodegeneration remain unclear. Here, we found that PLK2 regulated SNCA pathology independently of S129. Overexpression of PLK2 promoted SNCA preformed fibril (PFF)-induced aggregation of wild-type SNCA and mutant SNCAS129A. Genetic or pharmacological inhibition of PLK2 attenuated SNCA deposition and neurotoxicity. Mechanistically, PLK2 exacerbated the propagation of SNCA pathology by impeding the clearance of SNCA aggregates by blocking macroautophagic/autophagic flux. We further showed that PLK2 phosphorylated S1098 of DCTN1 (dynactin 1), a protein that controls the movement of organelles, leading to impaired autophagosome-lysosome fusion. Furthermore, genetic suppression of PLK2 alleviated SNCA aggregation and motor dysfunction in vivo. Our findings suggest that PLK2 negatively regulates autophagy, promoting SNCA pathology, suggesting a role for PLK2 in PD. Abbreviation: AD: Alzheimer disease; AMPK: AMP-activated protein kinase; CASP3: caspase 3; DCTN1: dynactin 1; LBs: lewy bodies; LDH: lactate dehydrogenase; LAMP1: lysosomal associated membrane protein 1; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MAP2: microtubule associated protein 2; MTOR: mechanistic target of rapamycin kinase; NH4Cl: ammonium chloride; p-SNCA: phosphorylation of SNCA at S129; PD: Parkinson disease; PFF: preformed fibril; PI: propidium iodide; PLK2: polo like kinase 2; PRKAA/AMPK: protein kinase AMP-activated catalytic subunit alpha; shRNA: short hairpin RNA; SNCA: synuclein, alpha; SQSTM1/p62: sequestosome 1; TH: tyrosine hydroxylase; TX: Triton X-100; ULK1: unc-51 like autophagy activating kinase 1.

  5. d

    Pd L1 And Pik3Ca Testing Product Market - Market Share, Industry Analysis...

    • datamintelligence.com
    pdf,excel,csv,ppt
    Updated Dec 26, 2023
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    DataM Intelligence (2023). Pd L1 And Pik3Ca Testing Product Market - Market Share, Industry Analysis with Key Companies 2024-2031 [Dataset]. https://www.datamintelligence.com/research-report/pd-l1-and-pik3ca-testing-product-market
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    pdf,excel,csv,pptAvailable download formats
    Dataset updated
    Dec 26, 2023
    Dataset authored and provided by
    DataM Intelligence
    License

    https://www.datamintelligence.com/terms-conditionshttps://www.datamintelligence.com/terms-conditions

    Area covered
    Global
    Description

    PD-L1 and PIK3CA Testing Product Market is expected to grow at a CAGR of 18.45% during the forecast period 2023-2030 | DataM Intelligence

  6. h

    Data from: Differential cross-sections of elastic p d scattering in the...

    • hepdata.net
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    Differential cross-sections of elastic p d scattering in the energy range 10-70 gev [Dataset]. http://doi.org/10.17182/hepdata.32586.v1
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    Description

    SERPUKHOV, DEUTERIUM GAS JET INTERNAL TARGET. T 1 PRESENTS THE FIRST SET OF MEASUREMENTS COVERING 0.02 & lt; -T & lt; 0.2 GEV**2. T 2 PRESENTS THE SECOND SET OF MEASUREMENTS COVERING 0.002 & lt; -T & lt; 0.05 GEV**2.COULOMB INTERFERENCE GAVE THE VALUE OF RE(AMP)/IM(AMP). T 3 PRESENTS COMBINED DATA FROM B OTH SETS OF MEASUREMENTS WHERE P DIFFERS BY NOT MORE THAN 1.5 GEV.

  7. f

    Data_Sheet_1_Deficiency of miR-29a/b1 leads to premature aging and...

    • frontiersin.figshare.com
    pdf
    Updated Jun 13, 2023
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    Xiaochen Bai; Jinghui Wang; Xiaoshuang Zhang; Yilin Tang; Yongtao He; Jiayin Zhao; Linlin Han; Rong Fang; Zhaolin Liu; Hongtian Dong; Qing Li; Jingyu Ge; Yuanyuan Ma; Mei Yu; Ruilin Sun; Jian Wang; Jian Fei; Fang Huang (2023). Data_Sheet_1_Deficiency of miR-29a/b1 leads to premature aging and dopaminergic neuroprotection in mice.pdf [Dataset]. http://doi.org/10.3389/fnmol.2022.978191.s001
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    pdfAvailable download formats
    Dataset updated
    Jun 13, 2023
    Dataset provided by
    Frontiers
    Authors
    Xiaochen Bai; Jinghui Wang; Xiaoshuang Zhang; Yilin Tang; Yongtao He; Jiayin Zhao; Linlin Han; Rong Fang; Zhaolin Liu; Hongtian Dong; Qing Li; Jingyu Ge; Yuanyuan Ma; Mei Yu; Ruilin Sun; Jian Wang; Jian Fei; Fang Huang
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Parkinson’s disease (PD) is a neurodegenerative disorder characterized by progressive degeneration of midbrain dopaminergic neurons. The miR-29s family, including miR-29a and miR-29b1 as well as miR-29b2 and miR-29c, are implicated in aging, metabolism, neuronal survival, and neurological disorders. In this study, the roles of miR-29a/b1 in aging and PD were investigated. miR-29a/b1 knockout mice (named as 29a KO hereafter) and their wild-type (WT) controls were used to analyze aging-related phenotypes. After challenged with the neurotoxin 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP), dopaminergic injuries, glial activation, and mouse behaviors were evaluated. Primary glial cells were further cultured to explore the underlying mechanisms. Additionally, the levels of miR-29s in the cerebrospinal fluid (CSF) of PD patients (n = 18) and healthy subjects (n = 17) were quantified. 29a KO mice showed dramatic weight loss, kyphosis, and along with increased and deepened wrinkles in skins, when compared with WT mice. Moreover, both abdominal and brown adipose tissues reduced in 29a KO mice, compared to their WT counterpart. However, in MPTP-induced PD mouse model, the deficiency of miR-29a/b1 led to less severe damages of dopaminergic system and mitigated glial activation in the nigrostriatal pathway, and subsequently alleviated the motor impairments in 3-month-old mice. Eight-month-old mutant mice maintained such a resistance to MPTP intoxication. Mechanistically, the deficiency of miR-29a/b-1 promoted the expression of neurotrophic factors in 1-Methyl-4-phenylpyridinium (MPP+)-treated primary mixed glia and primary astrocytes. In lipopolysaccharide (LPS)-treated primary microglia, knockout of miR-29a/b-1 inhibited the expression of inflammatory factors, and promoted the expression of anti-inflammatory factors and neurotrophic factors. Knockout of miR-29a/b1 increased the activity of AMP-activated protein kinase (AMPK) and repressed NF-κB/p65 signaling in glial cells. Moreover, we found miR-29a level was increased in the CSF of patients with PD. Our results suggest that 29a KO mice display the peripheral premature senility. The combined effects of less activated glial cells might contribute to the mitigated inflammatory responses and elicit resistance to MPTP intoxication in miR-29a/b1 KO mice.

  8. f

    Data from: 6-Hydroxydopamine induces secretion of PARK7/DJ-1 via...

    • tandf.figshare.com
    docx
    Updated Aug 8, 2023
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    Yasuomi Urano; Chinatsu Mori; Ayano Fuji; Keito Konno; Takayuki Yamamoto; Shohei Yashirogi; Mayu Ando; Yoshiro Saito; Noriko Noguchi (2023). 6-Hydroxydopamine induces secretion of PARK7/DJ-1 via autophagy-based unconventional secretory pathway [Dataset]. http://doi.org/10.6084/m9.figshare.6973877.v1
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    docxAvailable download formats
    Dataset updated
    Aug 8, 2023
    Dataset provided by
    Taylor & Francis
    Authors
    Yasuomi Urano; Chinatsu Mori; Ayano Fuji; Keito Konno; Takayuki Yamamoto; Shohei Yashirogi; Mayu Ando; Yoshiro Saito; Noriko Noguchi
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    PARK7/DJ-1 is a Parkinson disease- and cancer-associated protein that functions as a multifunctional protein involved in gene transcription regulation and anti-oxidative defense. Although PARK7 lacks the secretory signal sequence, it is secreted and plays important physiological and pathophysiological roles. Whereas secretory proteins that lack the endoplasmic reticulum-targeting signal sequence are secreted from cells by way of what is called the unconventional secretion mechanism, the specific processes responsible for causing PARK7 to be secreted across the plasma membrane have remained unclear. In the present study, we found that PARK7 secretion was increased by treatment with 6-OHDA via the unconventional secretory pathway in human neuroblastoma SH-SY5Y cells and MEF cells. We also found that 6-OHDA-induced PARK7 secretion was suppressed in Atg5-, Atg9-, or Atg16l1-deficient MEF cells or ATG16L1 knockdown SH-SY5Y cells, indicating that the autophagy-based unconventional secretory pathway is involved in PARK7 secretion. We moreover observed that 6-OHDA-derived electrophilic quinone induced oxidative stress as indicated by a decrease in glutathione levels, and that this was suppressed by pretreatment with antioxidant NAC. We further found that NAC treatment suppressed autophagy and PARK7 secretion. We also observed that 6-OHDA-induced autophagy was associated with activation of AMPK and ULK1 via a pathway which was independent of MTOR. Collectively these results suggest that electrophilic 6-OHDA quinone enhances oxidative stress, and that this is followed by AMPK-ULK1 pathway activation and induction of secretory autophagy to produce unconventional secretion of PARK7. Abbreviations: 6-OHDA: 6-hydroxydopamine; AMPK: AMP-activated protein kinase; ATG: autophagy related; CAV1: caveolin 1; ER: endoplasmic reticulum; FN1: fibronectin 1; GSH: glutathione; IDE: insulin degrading enzyme; IL: interleukin; LDH: lactate dehydrogenase; MAP1LC3B/LC3B: microtubule associated protein 1 light chain 3 beta; MEF: mouse embryonic fibroblast; MTOR: mechanistic target of rapamycin kinase; NAC: N-acetyl-L-cysteine; PARK7/DJ-1: Parkinsonism associated deglycase; PD: Parkinson disease; RPS6KB1/p70S6K: ribosomal protein S6 kinase B1; RPN1: ribophorin I; ROS: reactive oxygen species; ULK1: unc-51 like autophagy activating kinase 1; WT: wild-type

  9. f

    Table_1_The Impairments of α-Synuclein and Mechanistic Target of Rapamycin...

    • frontiersin.figshare.com
    doc
    Updated May 31, 2023
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    Mahesh Ramalingam; Yu-Jin Huh; Yun-Il Lee (2023). Table_1_The Impairments of α-Synuclein and Mechanistic Target of Rapamycin in Rotenone-Induced SH-SY5Y Cells and Mice Model of Parkinson’s Disease.DOC [Dataset]. http://doi.org/10.3389/fnins.2019.01028.s002
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    docAvailable download formats
    Dataset updated
    May 31, 2023
    Dataset provided by
    Frontiers
    Authors
    Mahesh Ramalingam; Yu-Jin Huh; Yun-Il Lee
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Parkinson’s disease (PD) is characterized by selective degeneration of dopaminergic (DAergic) neurons in the substantia nigra pars compacta (SNpc). α-synuclein (α-syn) is known to regulate mitochondrial function and both PINK1 and Parkin have been shown to eliminate damaged mitochondria in PD. Mechanistic target of rapamycin (mTOR) is expressed in several distinct subcellular compartments and mediates the effects of nutrients, growth factors, and stress on cell growth. However, the contributions of these various regulators to DAergic cell death have been demonstrated mainly in culture with serum, which is known to dramatically influence endogenous growth rate and toxin susceptibility through nutrient and growth factor signaling. Therefore, we compared neurotoxicity induced by the mitochondrial inhibitor rotenone (ROT, 5 or 10 μM for 24 h) in SH-SY5Y cells cultured with 10% fetal bovine serum (FBS), 1% FBS, or 1% bovine serum albumin (BSA, serum-free). In addition, C57BL/6J mice were injected with 12 μg ROT into the right striatum, and brains examined by histology and Western blotting 2 weeks later for evidence of DAergic cell death and the underlying signaling mechanisms. ROT dose-dependently reduced SH-SY5Y cell viability in all serum groups without a significant effect of serum concentration. ROT injection also significantly reduced immunoreactivity for the DAergic cell marker tyrosine hydroxylase (TH) in both the mouse striatum and SNpc. Western blotting revealed that ROT inhibited TH and Parkin expression while increasing α-syn and PINK1 expression in both SH-SY5Y cells and injected mice, consistent with disruption of mitochondrial function. Moreover, expression levels of the mTOR signaling pathway components mTORC, AMP-activated protein kinase (AMPK), ULK1, and ATG13 were altered in ROT-induced PD. Further, serum level influenced mTOR signaling in the absence of ROT and the changes in response to ROT. Signs of endoplasmic reticulum (ER) stress and altered expression of tethering proteins mediating mitochondria-associated ER contacts (MAMs) were also altered concomitant with ROT-induced neurodegeneration. Taken together, this study demonstrates that complex mechanism involving mitochondrial dysfunction, altered mTOR nutrient-sensing pathways, ER stress, and disrupted MAM protein dynamics are involved in DAergic neurodegeneration in response to ROT.

  10. r

    Fatturato annuo

    • reportaziende.it
    Updated Mar 10, 2025
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    Media Asset (2025). Fatturato annuo [Dataset]. https://www.reportaziende.it/amp_services_srl_pd_04381420282
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    Dataset updated
    Mar 10, 2025
    Dataset authored and provided by
    Media Asset
    License

    https://www.reportaziende.it/termini_e_condizioni_d_uso_del_serviziohttps://www.reportaziende.it/termini_e_condizioni_d_uso_del_servizio

    Variables measured
    annualRevenue
    Description

    Fatturato per gli ultimi anni, elenco utili/perdita, costo dipendenti, soci esponenti e contatti per A.M.P. SERVICES S.R.L. in PONTE SAN NICOLO' (PD)

  11. Not seeing a result you expected?
    Learn how you can add new datasets to our index.

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Hampton Leonard; Hampton Leonard; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang (2024). Global Parkinson's Genetics Program Data Release 5 [Dataset]. http://doi.org/10.5281/zenodo.7904832
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Global Parkinson's Genetics Program Data Release 5

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4 scholarly articles cite this dataset (View in Google Scholar)
pdfAvailable download formats
Dataset updated
Jul 12, 2024
Dataset provided by
Zenodohttp://zenodo.org/
Authors
Hampton Leonard; Hampton Leonard; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang; Mike Nalls; Dan Vitale; Mathew Koretsky; Kristin Levine; Mary Makarious; Zih-Hua Fang
License

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Description

In May 2023, GP2 announced the fifth data release on the Terra platform in collaboration with AMP® PD.

This release includes 7,462 additional new complex disease participants and 487 new monogenic disease participants, adding to the previous releases from the Complex and Monogenic Networks.

  • The complex disease data (genotypes) now consists of a total of 24,935 genotyped participants (12,728 PD cases, 10,533 Controls, and 1,674 ‘Other’ phenotypes).
  • The monogenic disease data (whole genome sequences) now consists of a total of 722 sequenced participants.

Please see the accompanying blog for further description of this release. To obtain data access, please see https://amp-pd.org/researchers/data-use-agreement. For any publications using data from this release, please reference the DOI number and the following statement: "Data (DOI 10.5281/zenodo.7904832, release 5) used in the preparation of this article were obtained from the Global Parkinson’s Genetics Program (GP2)."

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