100+ datasets found
  1. Bioinformatics data for paper

    • catalog.data.gov
    Updated Nov 12, 2020
    + more versions
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    U.S. EPA Office of Research and Development (ORD) (2020). Bioinformatics data for paper [Dataset]. https://catalog.data.gov/dataset/bioinformatics-data-for-paper
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    Dataset updated
    Nov 12, 2020
    Dataset provided by
    United States Environmental Protection Agencyhttp://www.epa.gov/
    Description

    Data for sequence comparison of commamox genomes and genes identified. This dataset is associated with the following publication: Camejo, P., J. Santodomingo, K. McMahon, and D. Noguera. Genome-enabled insights into the ecophysiology of the comammox bacterium Ca. Nitrospira nitrosa. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 2(5): 1-16, (2017).

  2. Bioinformatic training needs at a health sciences campus

    • plos.figshare.com
    • figshare.com
    pdf
    Updated Jun 4, 2023
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    Jeffrey C. Oliver (2023). Bioinformatic training needs at a health sciences campus [Dataset]. http://doi.org/10.1371/journal.pone.0179581
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    pdfAvailable download formats
    Dataset updated
    Jun 4, 2023
    Dataset provided by
    PLOShttp://plos.org/
    Authors
    Jeffrey C. Oliver
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    BackgroundHealth sciences research is increasingly focusing on big data applications, such as genomic technologies and precision medicine, to address key issues in human health. These approaches rely on biological data repositories and bioinformatic analyses, both of which are growing rapidly in size and scope. Libraries play a key role in supporting researchers in navigating these and other information resources.MethodsWith the goal of supporting bioinformatics research in the health sciences, the University of Arizona Health Sciences Library established a Bioinformation program. To shape the support provided by the library, I developed and administered a needs assessment survey to the University of Arizona Health Sciences campus in Tucson, Arizona. The survey was designed to identify the training topics of interest to health sciences researchers and the preferred modes of training.ResultsSurvey respondents expressed an interest in a broad array of potential training topics, including "traditional" information seeking as well as interest in analytical training. Of particular interest were training in transcriptomic tools and the use of databases linking genotypes and phenotypes. Staff were most interested in bioinformatics training topics, while faculty were the least interested. Hands-on workshops were significantly preferred over any other mode of training. The University of Arizona Health Sciences Library is meeting those needs through internal programming and external partnerships.ConclusionThe results of the survey demonstrate a keen interest in a variety of bioinformatic resources; the challenge to the library is how to address those training needs. The mode of support depends largely on library staff expertise in the numerous subject-specific databases and tools. Librarian-led bioinformatic training sessions provide opportunities for engagement with researchers at multiple points of the research life cycle. When training needs exceed library capacity, partnering with intramural and extramural units will be crucial in library support of health sciences bioinformatic research.

  3. P

    Bioinformatics Services Market Industry Forecast 2034

    • polarismarketresearch.com
    Updated Apr 15, 2025
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    Polaris Market Research (2025). Bioinformatics Services Market Industry Forecast 2034 [Dataset]. https://www.polarismarketresearch.com/industry-analysis/bioinformatics-services-market
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    Dataset updated
    Apr 15, 2025
    Dataset authored and provided by
    Polaris Market Research
    License

    https://www.polarismarketresearch.com/privacy-policyhttps://www.polarismarketresearch.com/privacy-policy

    Description

    Bioinformatics Services Market will grow from USD 4,399.58 Million to USD 16,297.10 Million by 2034, showing an impressive CAGR of 15.7%.

  4. Bioinformatics Market Analysis, Size, and Forecast 2025-2029: North America...

    • technavio.com
    Updated Jun 19, 2025
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    Technavio (2025). Bioinformatics Market Analysis, Size, and Forecast 2025-2029: North America (US, Canada, and Mexico), Europe (France, Germany, Italy, and UK), APAC (China, India, and Japan), and Rest of World (ROW) [Dataset]. https://www.technavio.com/report/bioinformatics-market-industry-analysis
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    Dataset updated
    Jun 19, 2025
    Dataset provided by
    TechNavio
    Authors
    Technavio
    Time period covered
    2021 - 2025
    Area covered
    Germany, Mexico, Europe, France, Canada, United Kingdom, United States, Global
    Description

    Snapshot img

    Bioinformatics Market Size 2025-2029

    The bioinformatics market size is forecast to increase by USD 15.98 billion at a CAGR of 17.4% between 2024 and 2029.

    The market is experiencing significant growth, driven by the reduction in the cost of genetic sequencing and the development of advanced bioinformatics tools for Next-Generation Sequencing (NGS) technologies. These advancements have led to an increase in the volume and complexity of genomic data, necessitating the need for sophisticated bioinformatics solutions. However, the market faces challenges, primarily the shortage of trained laboratory professionals capable of handling and interpreting the vast amounts of data generated. This skills gap can hinder the effective implementation and utilization of bioinformatics tools, potentially limiting the market's growth potential.
    Companies seeking to capitalize on market opportunities must focus on addressing this challenge by investing in training programs and collaborating with academic institutions. Additionally, data security, data privacy, and regulatory compliance are crucial aspects of the market, ensuring the protection and ethical use of sensitive biological data. Partnerships with technology providers and service organizations can help bridge the gap in expertise and resources, enabling organizations to leverage the power of bioinformatics for research and development, diagnostics, and personalized medicine applications.
    

    What will be the Size of the Bioinformatics Market during the forecast period?

    Explore in-depth regional segment analysis with market size data - historical 2019-2023 and forecasts 2025-2029 - in the full report.
    Request Free Sample

    The market is experiencing significant growth, driven by the increasing demand for precision medicine and the exploration of complex biological systems. Structural variation and gene regulation play crucial roles in gene networks and biological networks, necessitating advanced tools for SNP genotyping and statistical analysis. Precision medicine relies on the identification of mutations and biomarkers through mutation analysis and biomarker validation.
    Metabolic networks, protein microarrays, CDNA microarrays, and RNA microarrays contribute to the discovery of new insights in evolutionary biology and conservation biology. The integration of these technologies enables a comprehensive understanding of gene regulation, gene networks, and metabolic pathways, ultimately leading to the development of novel therapeutics. Protein-protein interactions and signal transduction pathways are essential in understanding protein networks and metabolic pathways. Ontology mapping and predictive modeling facilitate data warehousing and data analytics in this field.
    

    How is this Bioinformatics Industry segmented?

    The bioinformatics industry research report provides comprehensive data (region-wise segment analysis), with forecasts and estimates in 'USD million' for the period 2025-2029, as well as historical data from 2019-2023 for the following segments.

    Application
    
      Molecular phylogenetics
      Transcriptomic
      Proteomics
      Metabolomics
    
    
    Product
    
      Platforms
      Tools
      Services
    
    
    End-user
    
      Pharmaceutical and biotechnology companies
      CROs and research institutes
      Others
    
    
    Geography
    
      North America
    
        US
        Canada
        Mexico
    
    
      Europe
    
        France
        Germany
        Italy
        UK
    
    
      APAC
    
        China
        India
        Japan
    
    
      Rest of World (ROW)
    

    By Application Insights

    The molecular phylogenetics segment is estimated to witness significant growth during the forecast period. In the dynamic and innovative realm of bioinformatics, various technologies and techniques are shaping the future of research and development. Molecular phylogenetics, a significant branch of bioinformatics, employs molecular data to explore the evolutionary connections among species, offering enhanced insights into the intricacies of life. This technique has been instrumental in numerous research domains, such as drug discovery, disease diagnosis, and conservation biology. For instance, it plays a pivotal role in the study of viral evolution. By deciphering the molecular data of distinct virus strains, researchers can trace their evolutionary history and unravel their origins and transmission patterns.

    Furthermore, the integration of proteomic technologies, network analysis, data integration, and systems biology is expanding the scope of bioinformatics research and applications. Bioinformatics services, open-source bioinformatics, and commercial bioinformatics software are vital components of the market, catering to the diverse needs of researchers, industries, and institutions. Bioinformatics databases, including sequence databases and bioinformatics algorithms, are indispensable resources for storing, accessing, and analyzing biological data. In the realm of personalized medicine and drug di

  5. d

    Data from: Transcriptomic and bioinformatics analysis of the early...

    • catalog.data.gov
    • agdatacommons.nal.usda.gov
    Updated Apr 21, 2025
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    Agricultural Research Service (2025). Data from: Transcriptomic and bioinformatics analysis of the early time-course of the response to prostaglandin F2 alpha in the bovine corpus luteum [Dataset]. https://catalog.data.gov/dataset/data-from-transcriptomic-and-bioinformatics-analysis-of-the-early-time-course-of-the-respo-cd938
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    Dataset updated
    Apr 21, 2025
    Dataset provided by
    Agricultural Research Service
    Description

    RNA expression analysis was performed on the corpus luteum tissue at five time points after prostaglandin F2 alpha treatment of midcycle cows using an Affymetrix Bovine Gene v1 Array. The normalized linear microarray data was uploaded to the NCBI GEO repository (GSE94069). Subsequent statistical analysis determined differentially expressed transcripts ± 1.5-fold change from saline control with P ≤ 0.05. Gene ontology of differentially expressed transcripts was annotated by DAVID and Panther. Physiological characteristics of the study animals are presented in a figure. Bioinformatic analysis by Ingenuity Pathway Analysis was curated, compiled, and presented in tables. A dataset comparison with similar microarray analyses was performed and bioinformatics analysis by Ingenuity Pathway Analysis, DAVID, Panther, and String of differentially expressed genes from each dataset as well as the differentially expressed genes common to all three datasets were curated, compiled, and presented in tables. Finally, a table comparing four bioinformatics tools' predictions of functions associated with genes common to all three datasets is presented. These data have been further analyzed and interpreted in the companion article "Early transcriptome responses of the bovine mid-cycle corpus luteum to prostaglandin F2 alpha includes cytokine signaling". Resources in this dataset:Resource Title: Supporting information as Excel spreadsheets and tables. File Name: Web Page, url: http://www.sciencedirect.com/science/article/pii/S2352340917304031?via=ihub#s0070

  6. Bioinformatics Market Report | Global Forecast From 2025 To 2033

    • dataintelo.com
    csv, pdf, pptx
    Updated Jan 7, 2025
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    Dataintelo (2025). Bioinformatics Market Report | Global Forecast From 2025 To 2033 [Dataset]. https://dataintelo.com/report/global-bioinformatics-market
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    pdf, csv, pptxAvailable download formats
    Dataset updated
    Jan 7, 2025
    Dataset authored and provided by
    Dataintelo
    License

    https://dataintelo.com/privacy-and-policyhttps://dataintelo.com/privacy-and-policy

    Time period covered
    2024 - 2032
    Area covered
    Global
    Description

    Bioinformatics Market Outlook



    The global bioinformatics market size was projected at $10.4 billion in 2023 and is anticipated to grow to $24.8 billion by 2032, with a compound annual growth rate (CAGR) of 10.2%. This rapid growth is primarily attributed to the increasing demand for bioinformatics tools in genomics and proteomics research, thereby enhancing data interpretation and analysis capabilities. Additionally, the surge in the adoption of cloud-based solutions and the increasing volume of biological data generated through research activities are key factors driving the market growth. Furthermore, the rising emphasis on precision medicine and personalized healthcare approaches plays a significant role in the expansion of this market.



    One of the major growth factors driving the bioinformatics market is the vast amount of biological data being generated, necessitating advanced data analysis and management tools. The advent of next-generation sequencing technologies has revolutionized genetic research, leading to exponential data generation. Bioinformatics provides the necessary computational solutions to manage, analyze, and interpret this data efficiently. Moreover, the increasing collaboration between biological scientists and computer experts is further accelerating the development of novel bioinformatics tools, enhancing their application across various domains. This interdisciplinary approach is not only improving research outcomes but also facilitating the discovery of new biological insights.



    Another significant growth driver is the rising investment in research and development in the field of genomics and proteomics. Governments and private organizations across the globe are investing heavily in life sciences research to understand complex biological processes and diseases better. These investments are expected to increase the demand for sophisticated bioinformatics tools and services. Additionally, the integration of artificial intelligence and machine learning with bioinformatics is opening new avenues for research, enabling more precise data analysis and prediction models. This technological convergence is expected to provide significant growth opportunities for the bioinformatics market during the forecast period.



    The increasing prevalence of chronic diseases and the growing need for personalized medicine are also contributing to the expansion of the bioinformatics market. Personalized medicine, which tailors healthcare to individual patients, relies heavily on bioinformatics to analyze genetic information and develop targeted therapies. As healthcare systems worldwide shift towards more personalized approaches, the demand for bioinformatics solutions is expected to rise significantly. Moreover, bioinformatics plays a crucial role in drug discovery and development processes, providing insights that accelerate the identification of potential drug targets and biomarkers.



    The role of Life Sciences Software in the bioinformatics market is becoming increasingly prominent as researchers and healthcare providers seek more sophisticated tools to manage and analyze complex biological data. These software solutions are essential for processing the vast amounts of data generated by modern research techniques, such as next-generation sequencing and mass spectrometry. By providing robust data management and analysis capabilities, Life Sciences Software enables researchers to gain deeper insights into genetic and proteomic information, facilitating the discovery of new therapeutic targets and the development of personalized medicine approaches. As the demand for precision medicine continues to grow, the importance of Life Sciences Software in bioinformatics is expected to rise, driving innovation and market expansion.



    Regionally, North America holds the largest share of the bioinformatics market due to the presence of a well-established healthcare infrastructure and significant investments in biotechnological research. The region is home to several leading bioinformatics companies and research institutions, which are at the forefront of innovation and technological advancements. Additionally, the Asia Pacific region is expected to witness the fastest growth during the forecast period, driven by increasing government funding for genomics research and the growing adoption of bioinformatics in emerging economies like China and India. The expansion of biopharmaceutical industries and a rising focus on precision medicine in these regions are further contributing to market growth.



    Pro

  7. B

    Bioinformatics Platforms Market Report

    • datainsightsmarket.com
    doc, pdf, ppt
    Updated Jun 17, 2025
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    Data Insights Market (2025). Bioinformatics Platforms Market Report [Dataset]. https://www.datainsightsmarket.com/reports/bioinformatics-platforms-market-7647
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    ppt, pdf, docAvailable download formats
    Dataset updated
    Jun 17, 2025
    Dataset authored and provided by
    Data Insights Market
    License

    https://www.datainsightsmarket.com/privacy-policyhttps://www.datainsightsmarket.com/privacy-policy

    Time period covered
    2025 - 2033
    Area covered
    Global
    Variables measured
    Market Size
    Description

    The size of the Bioinformatics Platforms Market market was valued at USD 16.36 Million in 2023 and is projected to reach USD 27.93 Million by 2032, with an expected CAGR of 7.94% during the forecast period. The Bioinformatics Platforms Market includes the software and tools required to understand biological data that contain genomic, proteomic, or metabolic data. These platforms include support for various applications like drug discovery, individualized medicine, and clinically related diagnostics through helps of data integration, statistical analysis and visualization. Some of the emerging trends that are driving the bioinformatics market are cloud-based bioinformatics solutions to support scalability and collaboration, advanced machine learning and artificial intelligence (AI) technologies to accurately analyze raised significance of multi-omics data integration for profound tumor bioinformatics analysis. Such factors pulling the market ahead include increasing volume of biological data in facets like research and clinical trials, evolving sequencing technologies, along with the increasing requirement for enhanced data management and analysis in genomics and proteomics. Further, the rising usage of bioinformatics for customized treatment and the growing number of research studies in genomics complement the market’s growth. Recent developments include: In June 2022, California's biotechnology research startup LatchBio launched an end-to-end bioinformatics platform for handling big biotech data to accelerate scientific discovery., In March 2022, ARUP launched Rio, a bioinformatics pipeline and analytics platform for better, faster next-generation sequencing test results.. Key drivers for this market are: Increasing Demand for Nucleic Acid and Protein Sequencing, Increasing Initiatives from Governments and Private Organizations; Accelerating Growth of Proteomics and Genomics; Increasing Research on Molecular Biology and Drug Discovery. Potential restraints include: Lack of Well-defined Standards and Common Data Formats for Integration of Data, Data Complexity Concerns and Lack of User-friendly Tools. Notable trends are: Sequence Analysis Platform Segment is Expected Hold a Significant Share Over the Forecast Period.

  8. c

    Bioinformatics Market size was USD 12.76 Billion in 2022!

    • cognitivemarketresearch.com
    pdf,excel,csv,ppt
    Updated Apr 30, 2025
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    Cognitive Market Research (2025). Bioinformatics Market size was USD 12.76 Billion in 2022! [Dataset]. https://www.cognitivemarketresearch.com/bioinformatics-market-report
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    pdf,excel,csv,pptAvailable download formats
    Dataset updated
    Apr 30, 2025
    Dataset authored and provided by
    Cognitive Market Research
    License

    https://www.cognitivemarketresearch.com/privacy-policyhttps://www.cognitivemarketresearch.com/privacy-policy

    Time period covered
    2021 - 2033
    Area covered
    Global
    Description

    Global Bioinformatics market size was USD 12.76 Billion in 2022 and it is forecasted to reach USD 29.32 Billion by 2030. Bioinformatics Industry's Compound Annual Growth Rate will be 10.4% from 2023 to 2030. What are the driving factors for the Bioinformatics market?

    The primary factors propelling the global bioinformatics industry are advances in genomics, rising demand for protein sequencing, and rising public-private sector investment in bioinformatics. Large volumes of data are being produced by the expanding use of next-generation sequencing (NGS) and other genomic technologies; these data must be analyzed using advanced bioinformatics tools. Furthermore, the global bioinformatics industry may benefit from the development of emerging advanced technologies. However, the bioinformatics discipline contains intricate algorithms and massive amounts of data, which can be difficult for researchers and demand a lot of processing power. What is Bioinformatics?

    Bioinformatics is related to genetics and genomics, which involves the use of computer technology to store, collect, analyze, and disseminate biological information, and data, such as DNA and amino acid sequences or annotations about these sequences. Researchers and medical professionals use databases that organize and index this biological data to better understand health and disease, and in some circumstances, as a component of patient care. Through the creation of software and algorithms, bioinformatics is primarily used to extract knowledge from biological data. Bioinformatics is frequently used in the analysis of genomics, proteomics, 3D protein structure modeling, image analysis, drug creation, and many other fields.

  9. Promoters Highlight More than Two Phenotypes of Diabetes

    • figshare.com
    png
    Updated Jun 1, 2023
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    Paul A. Gagniuc (2023). Promoters Highlight More than Two Phenotypes of Diabetes [Dataset]. http://doi.org/10.6084/m9.figshare.2500795.v2
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    pngAvailable download formats
    Dataset updated
    Jun 1, 2023
    Dataset provided by
    figshare
    Authors
    Paul A. Gagniuc
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Promoters of genes associated with type 1 diabetes (T1D), Intermediary Diabetes Mellitus (IDM) and type 2 diabetes (T2D). T1D promoters (blue dots), T2D promoters (red dots) and promoters from genes associated with the “intermediary” phenotype (green dots).

  10. C

    Bioinformatics for Researchers in Life Sciences: Tools and Learning...

    • data.iadb.org
    csv, pdf
    Updated Apr 10, 2025
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    IDB Datasets (2025). Bioinformatics for Researchers in Life Sciences: Tools and Learning Resources [Dataset]. http://doi.org/10.60966/kwvb-wr19
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    csv(276253), pdf(2989058), csv(355108)Available download formats
    Dataset updated
    Apr 10, 2025
    Dataset provided by
    IDB Datasets
    License

    Attribution-NonCommercial-NoDerivs 3.0 (CC BY-NC-ND 3.0)https://creativecommons.org/licenses/by-nc-nd/3.0/
    License information was derived automatically

    Time period covered
    Jan 1, 2020 - Jan 1, 2021
    Description

    The COVID-19 pandemic has shown that bioinformatics--a multidisciplinary field that combines biological knowledge with computer programming concerned with the acquisition, storage, analysis, and dissemination of biological data--has a fundamental role in scientific research strategies in all disciplines involved in fighting the virus and its variants. It aids in sequencing and annotating genomes and their observed mutations; analyzing gene and protein expression; simulation and modeling of DNA, RNA, proteins and biomolecular interactions; and mining of biological literature, among many other critical areas of research. Studies suggest that bioinformatics skills in the Latin American and Caribbean region are relatively incipient, and thus its scientific systems cannot take full advantage of the increasing availability of bioinformatic tools and data. This dataset is a catalog of bioinformatics software for researchers and professionals working in life sciences. It includes more than 300 different tools for varied uses, such as data analysis, visualization, repositories and databases, data storage services, scientific communication, marketplace and collaboration, and lab resource management. Most tools are available as web-based or desktop applications, while others are programming libraries. It also includes 10 suggested entries for other third-party repositories that could be of use.

  11. Bioinformatics Software Market Report | Global Forecast From 2025 To 2033

    • dataintelo.com
    csv, pdf, pptx
    Updated Jan 7, 2025
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    Dataintelo (2025). Bioinformatics Software Market Report | Global Forecast From 2025 To 2033 [Dataset]. https://dataintelo.com/report/bioinformatics-software-market
    Explore at:
    csv, pptx, pdfAvailable download formats
    Dataset updated
    Jan 7, 2025
    Dataset authored and provided by
    Dataintelo
    License

    https://dataintelo.com/privacy-and-policyhttps://dataintelo.com/privacy-and-policy

    Time period covered
    2024 - 2032
    Area covered
    Global
    Description

    Bioinformatics Software Market Outlook



    The global bioinformatics software market size was valued at approximately USD 10 billion in 2023, and it is projected to reach around USD 25 billion by 2032, growing at a robust CAGR of 11% during the forecast period. This remarkable growth is fueled by the increased application of bioinformatics in drug discovery and development, the rising demand for personalized medicine, and the ongoing advancements in sequencing technologies. The convergence of biology and information technology has led to the optimization of biological data management, propelling the market's expansion as it transforms the landscape of biotechnology and pharmaceutical research. The rapid integration of artificial intelligence and machine learning techniques to process complex biological data further accentuates the growth trajectory of this market.



    An essential growth factor for the bioinformatics software market is the burgeoning demand for sequencing technologies. The decreasing cost of sequencing has led to a massive increase in the volume of genomic data generated, necessitating advanced software solutions to manage and interpret this data efficiently. This demand is particularly evident in genomics and proteomics, where bioinformatics software plays a critical role in analyzing and visualizing large datasets. Additionally, the adoption of cloud computing in bioinformatics offers scalable resources and cost-effective solutions for data storage and processing, further fueling market growth. The increasing collaboration between research institutions and software companies to develop innovative bioinformatics tools is also contributing positively to market expansion.



    Another significant driver is the growth of personalized medicine, which relies heavily on bioinformatics for the analysis of individual genetic information to tailor therapeutic strategies. As healthcare systems worldwide move towards precision medicine, the demand for bioinformatics software that can integrate genetic, phenotypic, and environmental data becomes more pronounced. This trend is not only transforming patient care but also significantly impacting drug development processes, as pharmaceutical companies aim to create more effective and targeted therapies. The strategic partnerships and collaborations between biotech firms and bioinformatics software providers are critical in advancing personalized medicine and enhancing patient outcomes.



    The increasing prevalence of complex diseases such as cancer and neurological disorders necessitates comprehensive research efforts, driving the need for robust bioinformatics software. These diseases require multi-omics approaches for better understanding, diagnosis, and treatment, where bioinformatics tools are indispensable. The ongoing research and development activities in this area, supported by government funding and private investments, are fostering innovation in bioinformatics solutions. Furthermore, the development of user-friendly and intuitive software interfaces is expanding the market beyond specialized research labs to include clinical settings and hospitals, broadening the potential user base and enhancing market penetration.



    From a regional perspective, North America currently leads the bioinformatics software market, thanks to its advanced technological infrastructure, significant investment in healthcare R&D, and the presence of numerous key market players. The region accounted for the largest market share in 2023 and is expected to maintain its dominance throughout the forecast period. Meanwhile, the Asia Pacific region is anticipated to exhibit the highest CAGR, driven by increasing investments in biotechnology and pharmaceutical research, expanding healthcare infrastructure, and the rising adoption of bioinformatics in emerging economies like China and India. Europe's market growth is also significant, supported by substantial funding for genomic research and a strong focus on precision medicine initiatives.



    Lifesciences Data Mining and Visualization are becoming increasingly vital in the bioinformatics software market. As the volume of biological data continues to grow exponentially, the need for sophisticated tools to mine and visualize this data is paramount. These tools enable researchers to uncover hidden patterns and insights from complex datasets, facilitating breakthroughs in genomics, proteomics, and other life sciences fields. The integration of advanced data mining techniques with visualization capabilities allows for a more intuitive

  12. s

    Bioinformatic Harvester IV (beta) at Karlsruhe Institute of Technology

    • scicrunch.org
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    Bioinformatic Harvester IV (beta) at Karlsruhe Institute of Technology [Dataset]. http://identifiers.org/RRID:SCR_008017
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    Area covered
    Karlsruhe
    Description

    Harvester is a Web-based tool that bulk-collects bioinformatic data on human proteins from various databases and prediction servers. It is a meta search engine for gene and protein information. It searches 16 major databases and prediction servers and combines the results on pregenerated HTML pages. In this way Harvester can provide comprehensive gene-protein information from different servers in a convenient and fast manner. As full text meta search engine, similar to Google trade mark, Harvester allows screening of the whole genome proteome for current protein functions and predictions in a few seconds. With Harvester it is now possible to compare and check the quality of different database entries and prediction algorithms on a single page. Sponsors: This work has been supported by the BMBF with grants 01GR0101 and 01KW0013.

  13. R

    RMQS1 16S bioinformatic config files and control sample data

    • entrepot.recherche.data.gouv.fr
    application/gzip, tsv +1
    Updated Aug 22, 2024
    + more versions
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    Sébastien Terrat; Sébastien Terrat; Samuel Dequiedt; Samuel Dequiedt (2024). RMQS1 16S bioinformatic config files and control sample data [Dataset]. http://doi.org/10.57745/XBFOJP
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    tsv(522347), txt(143493), tsv(8814), tsv(33093), tsv(117004), application/gzip(362535), tsv(13212), tsv(32344), tsv(266094), tsv(80032), txt(10413), tsv(16460)Available download formats
    Dataset updated
    Aug 22, 2024
    Dataset provided by
    Recherche Data Gouv
    Authors
    Sébastien Terrat; Sébastien Terrat; Samuel Dequiedt; Samuel Dequiedt
    License

    https://spdx.org/licenses/etalab-2.0.htmlhttps://spdx.org/licenses/etalab-2.0.html

    Dataset funded by
    French National Research Agency (ANR)
    France Génomique
    French Agency for Ecological Transition (ADEME)
    Description

    RMQS: The French Soil Quality Monitoring Network (RMQS) is a national program for the assessment and long-term monitoring of the quality of French soils. This network is based on the monitoring of 2240 sites representative of French soils and their land use. These sites are spread over the whole French territory (metropolitan and overseas) along a systematic square grid of 16 km x 16 km cells. The network covers a broad spectrum of climatic, soil and land-use conditions (croplands, permanent grasslands, woodlands, orchards and vineyards, natural or scarcely anthropogenic land and urban parkland). The first sampling campaign in metropolitan France took place from 2000 to 2009. Dataset: This dataset contains config files used to run the bioinformatic pipeline and the control sample data that were not published before Reference environmental DNA samples named “G4” in internal laboratory processes were added for each molecular analysis. They were used for technical validation, but not necessarily published alongside the datasets. The taxonomy and OTU abundance files for these control samples were built like the taxonomy and abundance file of the main dataset. As these internal control samples were clustered against the RMQS dataset in an open reference fashion, they contained new OTUs (noted as “OUT”) that corresponded to sequences that did not match any of 188,030 RMQS reference sequences. The sample bank association file links each sample to its sequencing library. The G4 metadata file links each G4 to its library, molecular tag and sequence repository information. File structure: Taxonomy files rmqs1_control_taxonomy_: Taxonomy is splitted across five files with one line per site and one column per taxa. Each line sums to 10k (rarefaction threshold). Three supplementary columns are present: Unknown: not matching any reference. Unclassified: missing taxa between genus and phylum. Environmental: matched to sample from environmental study, generally with only a phylum name. rmqs1_16S_otu_abundance.tsv: OTU abundance per site (one column per OTUs, “DB” + number for OTUs from RMQS reference set, “OUT” for OTUs not matching any “DB” ones). Each line sums to 10k (rarefaction threshold). rmqs1_16S_bank_association.tsv: two columns file with bank name for each sample rmqs1_16S_bank_metadata.tsv: library_name: library name used in labs study_accession, sample_accession, experiment_accession, run_accession: SRA EBI identifier library_name_genoscope: library name used in the Genoscope sequence center MID: multiplex identifier sequence run_alias: Genoscope internal alias ftp_link: FTP link to download library Input_G4.txt: Tabulated file containing the parameters and the bioinformatic steps done by the BIOCOM-PIPE pipeline to extract, treat and analyze controls from raw librairies detailed in the rmqs1_16S_bank_metadata.tsv. project_G4.tab: Comma separated file containing the needed information to generate the Input.txt file with the BIOCOM-PIPE pipeline for controls only: PROJECT: Project name chosen by the user LIBRARY_NAME: Library name chosen by the user LIBRARY_NAME_RECEIVED: Library name chosen by the sequencing partner and used by BIOCOM-PIPE SAMPLE_NAME: Sample name chosen by the user MID_F: MID name or MID sequence associated to the Forward primer MID_R: MID name or MID sequence associated to the Reverse primer TARGET: Target gene (16S, 18S, or 23S) PRIMER_F: Forward primer name used for amplification PRIMER_R: Reverse primer name used for amplification SEQUENCE_PRIMER_F: Forward primer sequence used for amplification SEQUENCE_PRIMER_R: Reverse primer sequence used for amplification Input_GLOBAL.txt: Tabulated file containing the parameters and the bioinformatic steps done by the BIOCOM-PIPE pipeline to extract, treat and analyze controls and samples from raw librairies detailed in the rmqs1_16S_bank_metadata.tsv. project_GLOBAL.tab: Comma separated file containing the needed information to generate the Input.txt file for controls and samples with the BIOCOM-PIPE pipeline: PROJECT: Project name chosen by the user LIBRARY_NAME: Library name chosen by the user LIBRARY_NAME_RECEIVED: Library name chosen by the sequencing partner and used by BIOCOM-PIPE SAMPLE_NAME: Sample name chosen by the user MID_F: MID name or MID sequence associated to the Forward primer MID_R: MID name or MID sequence associated to the Reverse primer TARGET: Target gene (16S, 18S, or 23S) PRIMER_F: Forward primer name used for amplification PRIMER_R: Reverse primer name used for amplification SEQUENCE_PRIMER_F: Forward primer sequence used for amplification SEQUENCE_PRIMER_R: Reverse primer sequence used for amplification Details: Three libraries (58,59 and 69) data were re-sequenced and are not detailed in files. Some samples can be present in several libraries. We kept only the one with the highest number of sequences.

  14. d

    Data from: Bioinformatic processing of RAD-seq data dramatically impacts...

    • datadryad.org
    • data.niaid.nih.gov
    • +1more
    zip
    Updated Oct 27, 2017
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    Aaron B. A. Shafer; Claire R. Peart; Sergio Tusso; Inbar Maayan; Alan Brelsford; Christopher W. Wheat; Jochen B. W. Wolf (2017). Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference [Dataset]. http://doi.org/10.5061/dryad.q14c1
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    zipAvailable download formats
    Dataset updated
    Oct 27, 2017
    Dataset provided by
    Dryad
    Authors
    Aaron B. A. Shafer; Claire R. Peart; Sergio Tusso; Inbar Maayan; Alan Brelsford; Christopher W. Wheat; Jochen B. W. Wolf
    Time period covered
    2017
    Area covered
    Galápagos archipelago
    Description

    Galápagos sea lion reference genomesReference genomes of the Galápagos sea lion in fasta format. One is derived from the CLC workbench and the other from mapping to the Antarctic fur seal.Genome.tar.gz

  15. Microarray and bioinformatic analysis of conventional ameloblastoma

    • data.scielo.org
    jpeg, txt, xlsx
    Updated Dec 20, 2022
    + more versions
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    Luis Fernando Jacinto-Alemán; Luis Fernando Jacinto-Alemán; Javier Portilla-Robertson; Elba Rosa Leyva-Huerta; Josué Orlando Ramírez-Jarquín; Francisco Germán Villanueva-Sánchez; Javier Portilla-Robertson; Elba Rosa Leyva-Huerta; Josué Orlando Ramírez-Jarquín; Francisco Germán Villanueva-Sánchez (2022). Microarray and bioinformatic analysis of conventional ameloblastoma [Dataset]. http://doi.org/10.48331/scielodata.Z2S8X9
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    xlsx(10317), jpeg(3415112), xlsx(9969), jpeg(12173968), txt(605), txt(289), txt(3840), xlsx(9964), xlsx(12458), txt(2657), txt(18077), xlsx(10402), jpeg(2313098), txt(406), txt(1023)Available download formats
    Dataset updated
    Dec 20, 2022
    Dataset provided by
    SciELOhttp://www.scielo.org/
    Authors
    Luis Fernando Jacinto-Alemán; Luis Fernando Jacinto-Alemán; Javier Portilla-Robertson; Elba Rosa Leyva-Huerta; Josué Orlando Ramírez-Jarquín; Francisco Germán Villanueva-Sánchez; Javier Portilla-Robertson; Elba Rosa Leyva-Huerta; Josué Orlando Ramírez-Jarquín; Francisco Germán Villanueva-Sánchez
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Dataset funded by
    National Autonomous University of Mexico
    Description

    Ameloblastoma is a highly aggressive odontogenic tumor, and its pathogenesis is associated with multiple participating genes. Objective: Our aim was to identify and validate new critical genes of conventional ameloblastoma using microarray and bioinformatics analysis. Methods: Gene expression microarray and bioinformatic analysis were performed to use CHIP H10KA and DAVID software for enrichment. Protein-protein interactions (PPI) were visualized using STRING-Cytoscape with MCODE plugin, followed by Kaplan-Meier and GEPIA analysis that were employed for the candidate's postulation. RT-qPCR and IHC assays were performed to validate the bioinformatic approach. Results: 376 upregulated genes were identified. PPI analysis revealed 14 genes that were validated by Kaplan-Meier and GEPIA resulting in PDGFA and IL2RA as candidate genes. The RT-qPCR analysis confirmed their intense expression. Immunohistochemistry analysis showed that PDGFA expression is parenchyma located. Conclusion: With bioinformatics methods, we can identify upregulated genes in conventional ameloblastoma, and with RT-qPCR and immunoexpression analysis validate that PDGFA could be a more specific and localized therapeutic target.

  16. Bioinformatics Services Market Size, Growth, Report & Share Analysis 2030

    • mordorintelligence.com
    pdf,excel,csv,ppt
    Updated Jun 30, 2025
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    Mordor Intelligence (2024). Bioinformatics Services Market Size & Share Analysis - Industry Research Report - Growth Trends [Dataset]. https://www.mordorintelligence.com/industry-reports/bioinformatics-services-market
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    pdf,excel,csv,pptAvailable download formats
    Dataset updated
    Jun 30, 2025
    Dataset authored and provided by
    Mordor Intelligence
    License

    https://www.mordorintelligence.com/privacy-policyhttps://www.mordorintelligence.com/privacy-policy

    Time period covered
    2019 - 2030
    Area covered
    Global
    Description

    The Bioinformatics Services Market is Segmented by Service Type (Data Analysis, Database Management, and More), Application (Drug Design & Discovery, Genomics & Proteomics, and More), End User (Pharmaceutical & Biotechnology Companies, and More), Deployment Model (On-Premise and Cloud-Based), and Geography (North America, Europe, Asia-Pacific, and More). The Market Sizes and Forecasts are Provided in Terms of Value (USD).

  17. p

    Trends in Science Proficiency (2021-2022): Research Laboratory High...

    • publicschoolreview.com
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    Public School Review, Trends in Science Proficiency (2021-2022): Research Laboratory High School-bioinformatic vs. New York vs. Buffalo City School District [Dataset]. https://www.publicschoolreview.com/research-laboratory-high-school-bioinformatic-profile
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    Dataset authored and provided by
    Public School Review
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Area covered
    Buffalo City School District, Buffalo
    Description

    This dataset tracks annual science proficiency from 2021 to 2022 for Research Laboratory High School-bioinformatic vs. New York and Buffalo City School District

  18. p

    Trends in Diversity Score (2021-2023): Research Laboratory High...

    • publicschoolreview.com
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    Public School Review, Trends in Diversity Score (2021-2023): Research Laboratory High School-bioinformatic vs. New York vs. Buffalo City School District [Dataset]. https://www.publicschoolreview.com/research-laboratory-high-school-bioinformatic-profile
    Explore at:
    Dataset authored and provided by
    Public School Review
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Area covered
    Buffalo City School District, Buffalo
    Description

    This dataset tracks annual diversity score from 2021 to 2023 for Research Laboratory High School-bioinformatic vs. New York and Buffalo City School District

  19. Bioinformatics Market Research Report 2033

    • growthmarketreports.com
    csv, pdf, pptx
    Updated Jun 28, 2025
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    Growth Market Reports (2025). Bioinformatics Market Research Report 2033 [Dataset]. https://growthmarketreports.com/report/bioinformatics-market-global-industry-analysis
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    pptx, csv, pdfAvailable download formats
    Dataset updated
    Jun 28, 2025
    Dataset authored and provided by
    Growth Market Reports
    Time period covered
    2024 - 2032
    Area covered
    Global
    Description

    Bioinformatics Market Outlook



    According to our latest research, the global bioinformatics market size reached USD 16.2 billion in 2024, reflecting robust industry momentum. The market is exhibiting a healthy compound annual growth rate (CAGR) of 13.1% and is projected to attain a value of USD 42.7 billion by 2033. This vigorous expansion is driven by the rapid integration of computational tools in life sciences, accelerating advancements in genomics, proteomics, and drug discovery. The increasing demand for personalized medicine and the surge in big data analytics within biological research are pivotal growth factors shaping the bioinformatics landscape.




    One of the principal growth factors fueling the bioinformatics market is the explosive rise in genomics research, particularly in the context of next-generation sequencing (NGS) technologies. The cost of sequencing has plummeted over the past decade, making large-scale genomic projects more accessible to both public and private sector entities. This democratization of sequencing technology has led to a significant influx of biological data, necessitating sophisticated bioinformatics tools for analysis, interpretation, and storage. The development of cloud-based bioinformatics platforms further enables researchers to manage and analyze vast datasets efficiently, fostering greater collaboration and innovation in genomics-driven healthcare, agriculture, and environmental sciences.




    Another critical driver is the increasing adoption of bioinformatics in drug discovery and development. Pharmaceutical and biotechnology companies are leveraging bioinformatics solutions to accelerate target identification, drug candidate screening, and biomarker discovery. The integration of artificial intelligence (AI) and machine learning algorithms within bioinformatics workflows is enhancing the predictive accuracy of drug response models and facilitating the identification of novel therapeutic targets. This not only shortens the drug development lifecycle but also reduces costs and improves the likelihood of clinical success. As precision medicine gains traction, bioinformatics is becoming indispensable in tailoring treatments based on individual genetic profiles, further propelling market growth across the healthcare sector.




    The expanding application of bioinformatics beyond human health is another significant growth factor. In agriculture, bioinformatics is instrumental in crop improvement, pest resistance, and livestock management through the analysis of genomic and phenotypic data. Environmental biotechnology also benefits from bioinformatics in monitoring biodiversity, tracking pathogen outbreaks, and assessing ecosystem health. Moreover, forensic biotechnology utilizes bioinformatics for DNA profiling and criminal investigations. These diverse applications underscore the versatility and critical importance of bioinformatics across multiple sectors, driving sustained investment and innovation in the market.




    From a regional perspective, North America continues to dominate the global bioinformatics market, accounting for the largest revenue share in 2024. This leadership is attributed to the presence of major industry players, significant government funding for genomics research, and a well-established healthcare infrastructure. Europe follows closely, supported by strong academic research and collaborative initiatives such as the European Bioinformatics Institute. Meanwhile, the Asia Pacific region is witnessing the fastest growth, fueled by rising investments in life sciences, expanding biotechnology industries, and increasing adoption of digital health solutions. Latin America and the Middle East & Africa are also emerging as promising markets, albeit at a comparatively nascent stage, driven by growing awareness and infrastructural improvements.





    Product & Service Analysis



    The bioinformatics market by product & service is segmented into software, hardware, and services, each playing a pivotal role in driving the

  20. B

    Bioinformatics Sequencing Service Report

    • datainsightsmarket.com
    doc, pdf, ppt
    Updated May 17, 2025
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    Data Insights Market (2025). Bioinformatics Sequencing Service Report [Dataset]. https://www.datainsightsmarket.com/reports/bioinformatics-sequencing-service-547313
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    ppt, doc, pdfAvailable download formats
    Dataset updated
    May 17, 2025
    Dataset authored and provided by
    Data Insights Market
    License

    https://www.datainsightsmarket.com/privacy-policyhttps://www.datainsightsmarket.com/privacy-policy

    Time period covered
    2025 - 2033
    Area covered
    Global
    Variables measured
    Market Size
    Description

    The global bioinformatics sequencing services market is experiencing robust growth, driven by the increasing adoption of next-generation sequencing (NGS) technologies in research and clinical applications. The market's expansion is fueled by several key factors, including the falling cost of sequencing, the rising prevalence of genetic disorders requiring advanced diagnostics, and the growing demand for personalized medicine. The application segments, research and clinical, are both contributing significantly to market growth, with research dominating due to the continuous need for genomic research in various fields like oncology, microbiology, and agriculture. Within the types of services, DNA sequencing currently holds a larger market share compared to RNA sequencing, though RNA sequencing is exhibiting faster growth due to its increasing importance in understanding gene expression and regulation. Key players like Illumina, GENEWIZ, and BGI are actively shaping the market landscape through technological innovation and strategic partnerships, fostering competition and driving down costs. The North American and European regions currently dominate the market, but the Asia-Pacific region is expected to witness significant growth in the coming years, driven by increasing investments in healthcare infrastructure and rising awareness of genetic testing in countries like China and India. While regulatory hurdles and data privacy concerns pose challenges, the overall market outlook remains positive, projecting substantial growth over the forecast period. The competitive landscape is characterized by a blend of established players and emerging companies, each vying for market share through technological advancements, strategic acquisitions, and partnerships. The market is witnessing a shift towards cloud-based bioinformatics platforms, providing scalability and accessibility to researchers and clinicians. Furthermore, the integration of artificial intelligence (AI) and machine learning (ML) in bioinformatics analysis is enhancing the speed and accuracy of data interpretation, leading to faster diagnoses and more effective treatment strategies. The increasing demand for comprehensive genomic profiling, coupled with the development of novel sequencing technologies, is expected to further drive market expansion. Although potential restraints exist, such as the high cost of advanced sequencing technologies and the need for specialized expertise in bioinformatics analysis, the overall growth trajectory of the bioinformatics sequencing services market remains strong, promising significant opportunities for players in the industry.

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U.S. EPA Office of Research and Development (ORD) (2020). Bioinformatics data for paper [Dataset]. https://catalog.data.gov/dataset/bioinformatics-data-for-paper
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Bioinformatics data for paper

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Dataset updated
Nov 12, 2020
Dataset provided by
United States Environmental Protection Agencyhttp://www.epa.gov/
Description

Data for sequence comparison of commamox genomes and genes identified. This dataset is associated with the following publication: Camejo, P., J. Santodomingo, K. McMahon, and D. Noguera. Genome-enabled insights into the ecophysiology of the comammox bacterium Ca. Nitrospira nitrosa. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 2(5): 1-16, (2017).

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