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Sample data for exercises in Further Adventures in Data Cleaning.
Access and clean an open source herbarium dataset using Excel or RStudio.
This dataset was created by Luis Lira
This dataset was created by George M122
Attribution-ShareAlike 3.0 (CC BY-SA 3.0)https://creativecommons.org/licenses/by-sa/3.0/
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Corpus consisting of 10,000 Facebook posts manually annotated on sentiment (2,587 positive, 5,174 neutral, 1,991 negative and 248 bipolar posts). The archive contains data and statistics in an Excel file (FBData.xlsx) and gold data in two text files with posts (gold-posts.txt) and labels (gols-labels.txt) on corresponding lines.
CC0 1.0 Universal Public Domain Dedicationhttps://creativecommons.org/publicdomain/zero/1.0/
License information was derived automatically
This dataset contains the results of a survey about the use of open government data applied to public agents working in public institutions in Brazil. It has two sets, one with questionnaire responses and metadata and the second with a coding table with interview extracts: 1) In the first dataset, each row holds a response to a questionnaire about the public agent's perceptions of the use and reuse of open government data in Brazilian public institutions. Columns store the questionnaire questions. Data were collected between 8 June and 13 July 2021, and this sample is composed of responses from 40 federal, state, and municipal public administrators. Thus, this dataset contains 40 rows and 158 columns. Data were collected on the LimeSurvey platform, where it was screened for missing values and incomplete responses. After cleaning, data were exported to Excel in tabular format. Questionnaire responses are provided in two files ResultsSurvey_OGDUseBRPubInstitutions_DataSet_PT and ResultsSurvey_OGDUseBRPubInstitutions_DataSet_EN. They contain the same information in Portuguese and English. 2) The second dataset records the code table of the interviews about the benefits, barriers, enablers, and drivers of open government data (OGD) use in Brazilian public institutions. A questionnaire applied to public agents working in Brazilian public institutions was followed up by interviews to broaden an understanding of the use of OGD. Nine interviews were conducted between May 17-31, 2022. This dataset represents the perspective of these public agents. The dataset contains 97 lines and six columns. Each row of the dataset lists the factor code used in the questionnaire, the factor descriptions in Portuguese and English, the interviewee code, the transcription extract of an interviewee narration collected in Portuguese, and the English translation. After collection in Portuguese, interviews were automatically transcribed using the NVivo Transcription software. Then, they were anonymized, and a human reviewed the transcriptions. Interviews were coded using NVivo and used the questionnaire factors to guide coding. Coded extracts were translated to English using Google and Microsoft translators. Then, translated extracts were revised by a human and were used for reporting. The coding table was exported to Excel. Interviews extracts are provided in one file, InterviewsExtracts_OGDUseBR_PublicInstitutions_Dataset.
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
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This data set supports the journal paper "Manipulating the consequences of tests: How Shanghai teens react to different consequences", published in Educational Research and Evaluation, v26 (n5-6), pp.221-251.The data were obtained to test the impact of different levels of consequence for taking a test on student test-taking effort. The data are part of the PhD project of Anran Zhao, supervised by Brown & Meissel.The data set is in MS Excel format. Sheet 1 provides an anonymous wide-format data set post-cleaning and missing value analysis of the data.Sheet 2 provides a description of each variable.
A Knowledge, Attitudes and Practices (KAP) survey was conducted in Ajuong Thok and Pamir Refugee Camps in October 2019 to determine the current Water, Sanitation and Hygiene (WASH) conditions as well as hygiene attitudes and practices within the households (HHs) surveyed. The assessment utilized a systematic random sampling method, and a total of 1,474 HHs (735 HHs in Ajuong Thok and 739 HHs in Pamir) were surveyed using mobile data collection (MDC) within a period of 21 days. Data was cleaned and analyzed in Excel. The summary of the results is presented in this report.
The findings show that the overall average number of liters of water per person per day was 23.4, in both Ajuong Thok and Pamir Camps, which was slightly higher than the recommended United Nations High Commissioner for Refugees (UNHCR) minimum standard of at least 20 liters of water available per person per day. This is a slight improvement from the 21 liters reported the previous year. The average HH size was six people. Women comprised 83% of the surveyed respondents and males 17%. Almost all the respondents were refugees, constituting 99.5% (n=1,466). The refugees were aware of the key health and hygiene practices, possibly as a result of routine health and hygiene messages delivered to them by Samaritan´s Purse (SP) and other health partners. Most refugees had knowledge about keeping the water containers clean, washing hands during critical times, safe excreta disposal and disease prevention.
Ajuong Thok and Pamir Refugee Camps
Households
All households in Ajuong Thok and Pamir Refugee Camps
Sample survey data [ssd]
Households were selected using systematic random sampling. Enumerators systematically walked through the camp block by block, row by row, in such a way as to pass each HH. Within blocks, enumerators started at one corner, then systematically used the sampling interval as they walked up and down each of the rows throughout the block, covering every block in Ajuong Thok and Pamir.
In each location, the first HH sampled in a block was generated using an Excel tool customized by UNHCR which generated a Random Start and Sampling Interval.
Face-to-face [f2f]
The survey questionnaire used to collect the data consists of the following sections: - Demographics - Water collection and storage - Drinking water hygiene - Hygiene - Sanitation - Messaging - Distribution (NFI) - Diarrhea prevalence, knowledge and health seeking behaviour - Menstrual hygiene
The data collected was uploaded to a server at the end of each day. IFormBuilder generated a Microsoft (MS) Excel spreadsheet dataset which was then cleaned and analyzed using MS Excel.
Given that SP is currently implementing a WASH program in Ajuong Thok and Pamir, the assessment data collected in these camps will not only serve as the endline for UNHCR 2018 programming but also as the baseline for 2019 programming.
Data was anonymized through decoding and local suppression.
We describe a bibliometric network characterizing co-authorship collaborations in the entire Italian academic community. The network, consisting of 38,220 nodes and 507,050 edges, is built upon two distinct data sources: faculty information provided by the Italian Ministry of University and Research and publications available in Semantic Scholar. Both nodes and edges are associated with a large variety of semantic data, including gender, bibliometric indexes, authors' and publications' research fields, and temporal information. While linking data between the two original sources posed many challenges, the network has been carefully validated to assess its reliability and to understand its graph-theoretic characteristics. By resembling several features of social networks, our dataset can be profitably leveraged in experimental studies in the wide social network analytics domain as well as in more specific bibliometric contexts. , The proposed network is built starting from two distinct data sources:
the entire dataset dump from Semantic Scholar (with particular emphasis on the authors and papers datasets) the entire list of Italian faculty members as maintained by Cineca (under appointment by the Italian Ministry of University and Research).
By means of a custom name-identity recognition algorithm (details are available in the accompanying paper published in Scientific Data), the names of the authors in the Semantic Scholar dataset have been mapped against the names contained in the Cineca dataset and authors with no match (e.g., because of not being part of an Italian university) have been discarded. The remaining authors will compose the nodes of the network, which have been enriched with node-related (i.e., author-related) attributes. In order to build the network edges, we leveraged the papers dataset from Semantic Scholar: specifically, any two authors are said to be connected if there is at least one pap..., , # Data cleaning and enrichment through data integration: networking the Italian academia
https://doi.org/10.5061/dryad.wpzgmsbwj
This repository contains two main data files:
edge_data_AGG.csv
, the full network in comma-separated edge list format (this file contains mainly temporal co-authorship information);Coauthorship_Network_AGG.graphml
, the full network in GraphML format. along with several supplementary data, listed below, useful only to build the network (i.e., for reproducibility only):
University-City-match.xlsx
, an Excel file that maps the name of a university against the city where its respective headquarter is located;Areas-SS-CINECA-match.xlsx
, an Excel file that maps the research areas in Cineca against the research areas in Semantic Scholar.The Coauthorship_Network_AGG.graphml
 is intended to be the core file which c...
https://www.skyquestt.com/privacy/https://www.skyquestt.com/privacy/
Global Cleaning Robot Market size was valued at USD 4.19 billion in 2022 and is poised to grow from USD 4.97 billion in 2023 to USD 12.81 billion by 2031, growing at a CAGR of 22.9% in the forecast period (2024-2031).
Data for manuscript “Functional morphology and efficiency of the antenna cleaner in Camponotus rufifemur ants"Excel file includes 3 data sheets. One sheet for each experiment. The corresponding figures from the manuscript are mentioned above the actual data.Manuscript data.xlsx
For any questions about this data please email me at jacob@crimedatatool.com. If you use this data, please cite it.Version 4 release notes:Adds data for 2018Version 3 release notes:Adds data in the following formats: Excel.Changes project name to avoid confusing this data for the ones done by NACJD.Version 2 release notes:Adds data for 2017.Adds a "number_of_months_reported" variable which says how many months of the year the agency reported data.Property Stolen and Recovered is a Uniform Crime Reporting (UCR) Program data set with information on the number of offenses (crimes included are murder, rape, robbery, burglary, theft/larceny, and motor vehicle theft), the value of the offense, and subcategories of the offense (e.g. for robbery it is broken down into subcategories including highway robbery, bank robbery, gas station robbery). The majority of the data relates to theft. Theft is divided into subcategories of theft such as shoplifting, theft of bicycle, theft from building, and purse snatching. For a number of items stolen (e.g. money, jewelry and previous metals, guns), the value of property stolen and and the value for property recovered is provided. This data set is also referred to as the Supplement to Return A (Offenses Known and Reported). All the data was received directly from the FBI as text or .DTA files. I created a setup file based on the documentation provided by the FBI and read the data into R using the package asciiSetupReader. All work to clean the data and save it in various file formats was also done in R. For the R code used to clean this data, see here: https://github.com/jacobkap/crime_data. The Word document file available for download is the guidebook the FBI provided with the raw data which I used to create the setup file to read in data.There may be inaccuracies in the data, particularly in the group of columns starting with "auto." To reduce (but certainly not eliminate) data errors, I replaced the following values with NA for the group of columns beginning with "offenses" or "auto" as they are common data entry error values (e.g. are larger than the agency's population, are much larger than other crimes or months in same agency): 1000, 2000, 3000, 4000, 5000, 6000, 7000, 8000, 9000, 10000, 20000, 30000, 40000, 50000, 60000, 70000, 80000, 90000, 100000, 99942. This cleaning was NOT done on the columns starting with "value."For every numeric column I replaced negative indicator values (e.g. "j" for -1) with the negative number they are supposed to be. These negative number indicators are not included in the FBI's codebook for this data but are present in the data. I used the values in the FBI's codebook for the Offenses Known and Clearances by Arrest data.To make it easier to merge with other data, I merged this data with the Law Enforcement Agency Identifiers Crosswalk (LEAIC) data. The data from the LEAIC add FIPS (state, county, and place) and agency type/subtype. If an agency has used a different FIPS code in the past, check to make sure the FIPS code is the same as in this data.
Attribution-NonCommercial-NoDerivs 4.0 (CC BY-NC-ND 4.0)https://creativecommons.org/licenses/by-nc-nd/4.0/
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These data were retrospectively collected for the REACH study, funded by the NHMRC GNT1076006, in 11 Australian hospitals. This single dataset is the combined costs associated with the REACH cleaning bundle implementation forthe period between 27/06/2016 and 30/07/2017.
Software used to analyse data: R, Microsoft Excel
This dataset was generated from a set of Excel spreadsheets from an Information and Communication Technology Services (ICTS) administrative database on student applications to the University of Cape Town (UCT). This database contains information on applications to UCT between the January 2006 and December 2014. In the original form received by DataFirst the data were ill suited to research purposes. This dataset represents an attempt at cleaning and organizing these data into a more tractable format. To ensure data confidentiality direct identifiers have been removed from the data and the data is only made available to accredited researchers through DataFirst's Secure Data Service.
The dataset was separated into the following data files:
Applications, individuals
Administrative records [adm]
Other [oth]
The data files were made available to DataFirst as a group of Excel spreadsheet documents from an SQL database managed by the University of Cape Town's Information and Communication Technology Services . The process of combining these original data files to create a research-ready dataset is summarised in a document entitled "Notes on preparing the UCT Student Application Data 2006-2014" accompanying the data.
The main objectives of the survey were: - To obtain weights for the revision of the Consumer Price Index (CPI) for Funafuti; - To provide information on the nature and distribution of household income, expenditure and food consumption patterns; - To provide data on the household sector's contribution to the National Accounts - To provide information on economic activity of men and women to study gender issues - To undertake some poverty analysis
National, including Funafuti and Outer islands
All the private household are included in the sampling frame. In each household selected, the current resident are surveyed, and people who are usual resident but are currently away (work, health, holydays reasons, or border student for example. If the household had been residing in Tuvalu for less than one year: - but intend to reside more than 12 months => The household is included - do not intend to reside more than 12 months => out of scope
Sample survey data [ssd]
It was decided that 33% (one third) sample was sufficient to achieve suitable levels of accuracy for key estimates in the survey. So the sample selection was spread proportionally across all the island except Niulakita as it was considered too small. For selection purposes, each island was treated as a separate stratum and independent samples were selected from each. The strategy used was to list each dwelling on the island by their geographical position and run a systematic skip through the list to achieve the 33% sample. This approach assured that the sample would be spread out across each island as much as possible and thus more representative.
For details please refer to Table 1.1 of the Report.
Only the island of Niulakita was not included in the sampling frame, considered too small.
Face-to-face [f2f]
There were three main survey forms used to collect data for the survey. Each question are writen in English and translated in Tuvaluan on the same version of the questionnaire. The questionnaires were designed based on the 2004 survey questionnaire.
HOUSEHOLD FORM - composition of the household and demographic profile of each members - dwelling information - dwelling expenditure - transport expenditure - education expenditure - health expenditure - land and property expenditure - household furnishing - home appliances - cultural and social payments - holydays/travel costs - Loans and saving - clothing - other major expenditure items
INDIVIDUAL FORM - health and education - labor force (individu aged 15 and above) - employment activity and income (individu aged 15 and above): wages and salaries, working own business, agriculture and livestock, fishing, income from handicraft, income from gambling, small scale activies, jobs in the last 12 months, other income, childreen income, tobacco and alcohol use, other activities, and seafarer
DIARY (one diary per week, on a 2 weeks period, 2 diaries per household were required) - All kind of expenses - Home production - food and drink (eaten by the household, given away, sold) - Goods taken from own business (consumed, given away) - Monetary gift (given away, received, winning from gambling) - Non monetary gift (given away, received, winning from gambling)
Questionnaire Design Flaws Questionnaire design flaws address any problems with the way questions were worded which will result in an incorrect answer provided by the respondent. Despite every effort to minimize this problem during the design of the respective survey questionnaires and the diaries, problems were still identified during the analysis of the data. Some examples are provided below:
Gifts, Remittances & Donations Collecting information on the following: - the receipt and provision of gifts - the receipt and provision of remittances - the provision of donations to the church, other communities and family occasions is a very difficult task in a HIES. The extent of these activities in Tuvalu is very high, so every effort should be made to address these activities as best as possible. A key problem lies in identifying the best form (questionnaire or diary) for covering such activities. A general rule of thumb for a HIES is that if the activity occurs on a regular basis, and involves the exchange of small monetary amounts or in-kind gifts, the diary is more appropriate. On the other hand, if the activity is less infrequent, and involves larger sums of money, the questionnaire with a recall approach is preferred. It is not always easy to distinguish between the two for the different activities, and as such, both the diary and questionnaire were used to collect this information. Unfortunately it probably wasn?t made clear enough as to what types of transactions were being collected from the different sources, and as such some transactions might have been missed, and others counted twice. The effects of these problems are hopefully minimal overall.
Defining Remittances Because people have different interpretations of what constitutes remittances, the questionnaire needs to be very clear as to how this concept is defined in the survey. Unfortunately this wasn?t explained clearly enough so it was difficult to distinguish between a remittance, which should be of a more regular nature, and a one-off monetary gift which was transferred between two households.
Business Expenses Still Recorded The aim of the survey is to measure "household" expenditure, and as such, any expenditure made by a household for an item or service which was primarily used for a business activity should be excluded. It was not always clear in the questionnaire that this was the case, and as such some business expenses were included. Efforts were made during data cleaning to remove any such business expenses which would impact significantly on survey results.
Purchased goods given away as a gift When a household makes a gift donation of an item it has purchased, this is recorded in section 5 of the diary. Unfortunately it was difficult to know how to treat these items as it was not clear as to whether this item had been recorded already in section 1 of the diary which covers purchases. The decision was made to exclude all information of gifts given which were considered to be purchases, as these items were assumed to have already been recorded already in section 1. Ideally these items should be treated as a purchased gift given away, which in turn is not household consumption expenditure, but this was not possible.
Some key items missed in the Questionnaire Although not a big issue, some key expenditure items were omitted from the questionnaire when it would have been best to collect them via this schedule. A key example being electric fans which many households in Tuvalu own.
Consistency of the data: - each questionnaire was checked by the supervisor during and after the collection - before data entry, all the questionnaire were coded - the CSPRo data entry system included inconsistency checks which allow the NSO staff to point some errors and to correct them with imputation estimation from their own knowledge (no time for double entry), 4 data entry operators. - after data entry, outliers were identified in order to check their consistency.
All data entry, including editing, edit checks and queries, was done using CSPro (Census Survey Processing System) with additional data editing and cleaning taking place in Excel.
The staff from the CSD was responsible for undertaking the coding and data entry, with assistance from an additional four temporary staff to help produce results in a more timely manner.
Although enumeration didn't get completed until mid June, the coding and data entry commenced as soon as forms where available from Funafuti, which was towards the end of March. The coding and data entry was then completed around the middle of July.
A visit from an SPC consultant then took place to undertake initial cleaning of the data, primarily addressing missing data items and missing schedules. Once the initial data cleaning was undertaken in CSPro, data was transferred to Excel where it was closely scrutinized to check that all responses were sensible. In the cases where unusual values were identified, original forms were consulted for these households and modifications made to the data if required.
Despite the best efforts being made to clean the data file in preparation for the analysis, no doubt errors will still exist in the data, due to its size and complexity. Having said this, they are not expected to have significant impacts on the survey results.
Under-Reporting and Incorrect Reporting as a result of Poor Field Work Procedures The most crucial stage of any survey activity, whether it be a population census or a survey such as a HIES is the fieldwork. It is crucial for intense checking to take place in the field before survey forms are returned to the office for data processing. Unfortunately, it became evident during the cleaning of the data that fieldwork wasn?t checked as thoroughly as required, and as such some unexpected values appeared in the questionnaires, as well as unusual results appearing in the diaries. Efforts were made to indentify the main issues which would have the greatest impact on final results, and this information was modified using local knowledge, to a more reasonable answer, when required.
Data Entry Errors Data entry errors are always expected, but can be kept to a minimum with
The harmonized data set on health, created and published by the ERF, is a subset of Iraq Household Socio Economic Survey (IHSES) 2012. It was derived from the household, individual and health modules, collected in the context of the above mentioned survey. The sample was then used to create a harmonized health survey, comparable with the Iraq Household Socio Economic Survey (IHSES) 2007 micro data set.
----> Overview of the Iraq Household Socio Economic Survey (IHSES) 2012:
Iraq is considered a leader in household expenditure and income surveys where the first was conducted in 1946 followed by surveys in 1954 and 1961. After the establishment of Central Statistical Organization, household expenditure and income surveys were carried out every 3-5 years in (1971/ 1972, 1976, 1979, 1984/ 1985, 1988, 1993, 2002 / 2007). Implementing the cooperation between CSO and WB, Central Statistical Organization (CSO) and Kurdistan Region Statistics Office (KRSO) launched fieldwork on IHSES on 1/1/2012. The survey was carried out over a full year covering all governorates including those in Kurdistan Region.
The survey has six main objectives. These objectives are:
The raw survey data provided by the Statistical Office were then harmonized by the Economic Research Forum, to create a comparable version with the 2006/2007 Household Socio Economic Survey in Iraq. Harmonization at this stage only included unifying variables' names, labels and some definitions. See: Iraq 2007 & 2012- Variables Mapping & Availability Matrix.pdf provided in the external resources for further information on the mapping of the original variables on the harmonized ones, in addition to more indications on the variables' availability in both survey years and relevant comments.
National coverage: Covering a sample of urban, rural and metropolitan areas in all the governorates including those in Kurdistan Region.
1- Household/family. 2- Individual/person.
The survey was carried out over a full year covering all governorates including those in Kurdistan Region.
Sample survey data [ssd]
----> Design:
Sample size was (25488) household for the whole Iraq, 216 households for each district of 118 districts, 2832 clusters each of which includes 9 households distributed on districts and governorates for rural and urban.
----> Sample frame:
Listing and numbering results of 2009-2010 Population and Housing Survey were adopted in all the governorates including Kurdistan Region as a frame to select households, the sample was selected in two stages: Stage 1: Primary sampling unit (blocks) within each stratum (district) for urban and rural were systematically selected with probability proportional to size to reach 2832 units (cluster). Stage two: 9 households from each primary sampling unit were selected to create a cluster, thus the sample size of total survey clusters was 25488 households distributed on the governorates, 216 households in each district.
----> Sampling Stages:
In each district, the sample was selected in two stages: Stage 1: based on 2010 listing and numbering frame 24 sample points were selected within each stratum through systematic sampling with probability proportional to size, in addition to the implicit breakdown urban and rural and geographic breakdown (sub-district, quarter, street, county, village and block). Stage 2: Using households as secondary sampling units, 9 households were selected from each sample point using systematic equal probability sampling. Sampling frames of each stages can be developed based on 2010 building listing and numbering without updating household lists. In some small districts, random selection processes of primary sampling may lead to select less than 24 units therefore a sampling unit is selected more than once , the selection may reach two cluster or more from the same enumeration unit when it is necessary.
Face-to-face [f2f]
----> Preparation:
The questionnaire of 2006 survey was adopted in designing the questionnaire of 2012 survey on which many revisions were made. Two rounds of pre-test were carried out. Revision were made based on the feedback of field work team, World Bank consultants and others, other revisions were made before final version was implemented in a pilot survey in September 2011. After the pilot survey implemented, other revisions were made in based on the challenges and feedbacks emerged during the implementation to implement the final version in the actual survey.
----> Questionnaire Parts:
The questionnaire consists of four parts each with several sections: Part 1: Socio – Economic Data: - Section 1: Household Roster - Section 2: Emigration - Section 3: Food Rations - Section 4: housing - Section 5: education - Section 6: health - Section 7: Physical measurements - Section 8: job seeking and previous job
Part 2: Monthly, Quarterly and Annual Expenditures: - Section 9: Expenditures on Non – Food Commodities and Services (past 30 days). - Section 10 : Expenditures on Non – Food Commodities and Services (past 90 days). - Section 11: Expenditures on Non – Food Commodities and Services (past 12 months). - Section 12: Expenditures on Non-food Frequent Food Stuff and Commodities (7 days). - Section 12, Table 1: Meals Had Within the Residential Unit. - Section 12, table 2: Number of Persons Participate in the Meals within Household Expenditure Other Than its Members.
Part 3: Income and Other Data: - Section 13: Job - Section 14: paid jobs - Section 15: Agriculture, forestry and fishing - Section 16: Household non – agricultural projects - Section 17: Income from ownership and transfers - Section 18: Durable goods - Section 19: Loans, advances and subsidies - Section 20: Shocks and strategy of dealing in the households - Section 21: Time use - Section 22: Justice - Section 23: Satisfaction in life - Section 24: Food consumption during past 7 days
Part 4: Diary of Daily Expenditures: Diary of expenditure is an essential component of this survey. It is left at the household to record all the daily purchases such as expenditures on food and frequent non-food items such as gasoline, newspapers…etc. during 7 days. Two pages were allocated for recording the expenditures of each day, thus the roster will be consists of 14 pages.
----> Raw Data:
Data Editing and Processing: To ensure accuracy and consistency, the data were edited at the following stages: 1. Interviewer: Checks all answers on the household questionnaire, confirming that they are clear and correct. 2. Local Supervisor: Checks to make sure that questions has been correctly completed. 3. Statistical analysis: After exporting data files from excel to SPSS, the Statistical Analysis Unit uses program commands to identify irregular or non-logical values in addition to auditing some variables. 4. World Bank consultants in coordination with the CSO data management team: the World Bank technical consultants use additional programs in SPSS and STAT to examine and correct remaining inconsistencies within the data files. The software detects errors by analyzing questionnaire items according to the expected parameter for each variable.
----> Harmonized Data:
Iraq Household Socio Economic Survey (IHSES) reached a total of 25488 households. Number of households refused to response was 305, response rate was 98.6%. The highest interview rates were in Ninevah and Muthanna (100%) while the lowest rates were in Sulaimaniya (92%).
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The National Health and Nutrition Examination Survey (NHANES) provides data on the health and environmental exposure of the non-institutionalized US population. Such data have considerable potential to understand how the environment and behaviors impact human health. These data are also currently leveraged to answer public health questions such as prevalence of disease. However, these data need to first be processed before new insights can be derived through large-scale analyses. NHANES data are stored across hundreds of files with multiple inconsistencies. Correcting such inconsistencies takes systematic cross examination and considerable efforts but is required for accurately and reproducibly characterizing the associations between the exposome and diseases (e.g., cancer mortality outcomes). Thus, we developed a set of curated and unified datasets and accompanied code by merging 614 separate files and harmonizing unrestricted data across NHANES III (1988-1994) and Continuous (1999-2018), totaling 134,310 participants and 4,740 variables. The variables convey 1) demographic information, 2) dietary consumption, 3) physical examination results, 4) occupation, 5) questionnaire items (e.g., physical activity, general health status, medical conditions), 6) medications, 7) mortality status linked from the National Death Index, 8) survey weights, 9) environmental exposure biomarker measurements, and 10) chemical comments that indicate which measurements are below or above the lower limit of detection. We also provide a data dictionary listing the variables and their descriptions to help researchers browse the data. We also provide R markdown files to show example codes on calculating summary statistics and running regression models to help accelerate high-throughput analysis of the exposome and secular trends on cancer mortality. csv Data Record: The curated NHANES datasets and the data dictionaries includes 13 .csv files and 1 excel file. The curated NHANES datasets involves 10 .csv formatted files, one for each module and labeled as the following: 1) mortality, 2) dietary, 3) demographics, 4) response, 5) medications, 6) questionnaire, 7) chemicals, 8) occupation, 9) weights, and 10) comments. The eleventh file is a dictionary that lists the variable name, description, module, category, units, CAS Number, comment use, chemical family, chemical family shortened, number of measurements, and cycles available for all 4,740 variables in NHANES ("dictionary_nhanes.csv"). The 12th csv file contains the harmonized categories for the categorical variables ("dictionary_harmonized_categories.csv"). The 13th file contains the dictionary for descriptors on the drugs codes (“dictionary_drug_codes.csv”). The 14th file is an excel file that contains the cleaning documentation, which records all the inconsistencies for all affected variables to help curate each of the NHANES datasets (“nhanes_inconsistencies_documentation.xlsx”). R Data Record: For researchers who want to conduct their analysis in the R programming language, the curated NHANES datasets and the data dictionaries can be downloaded as a .zip file which include an .RData file and an .R file. We provided an .RData file that contains all the aforementioned datasets as R data objects (“w - nhanes_1988_2018.RData”). Also in this .RData file, we make available all R scripts on customized functions that were written to curate the data. We also provide an .R file that shows how we used the customized functions (i.e. our pipeline) to curate the data (“m - nhanes_1988_2018.R”).
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
Excel spreadsheets providing the data plotted in the paper, and a Methods file. The Methods file provides a detailed description of the contents of the dataset.
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
Data and R code used for the analysis of data for the publication: Coumoundouros et al., Cognitive behavioural therapy self-help intervention preferences among informal caregivers of adults with chronic kidney disease: an online cross-sectional survey. BMC Nephrology
Summary of study
An online cross-sectional survey for informal caregivers (e.g. family and friends) of people living with chronic kidney disease in the United Kingdom. Study aimed to examine informal caregivers' cognitive behavioural therapy self-help intervention preferences, and describe the caregiving situation (e.g. types of care activities) and informal caregiver's mental health (depression, anxiety and stress symptoms).
Participants were eligible to participate if they were at least 18 years old, lived in the United Kingdom, and provided unpaid care to someone living with chronic kidney disease who was at least 18 years old.
The online survey included questions regarding (1) informal caregiver's characteristics; (2) care recipient's characteristics; (3) intervention preferences (e.g. content, delivery format); and (4) informal caregiver's mental health. Informal caregiver's mental health was assessed using the 21 item Depression, Anxiety, and Stress Scale (DASS-21), which is composed of three subscales measuring depression, anxiety, and stress, respectively.
Sixty-five individuals participated in the survey.
See the published article for full study details.
Description of uploaded files
1. ENTWINE_ESR14_Kidney Carer Survey Data_FULL_2022-08-30: Excel file with the complete, raw survey data. Note: the first half of participant's postal codes was collected, however this data was removed from the uploaded dataset to ensure participant anonymity.
2. ENTWINE_ESR14_Kidney Carer Survey Data_Clean DASS-21 Data_2022-08-30: Excel file with cleaned data for the DASS-21 scale. Data cleaning involved imputation of missing data if participants were missing data for one item within a subscale of the DASS-21. Missing values were imputed by finding the mean of all other items within the relevant subscale.
3. ENTWINE_ESR14_Kidney Carer Survey_KEY_2022-08-30: Excel file with key linking item labels in uploaded datasets with the corresponding survey question.
4. R Code for Kidney Carer Survey_2022-08-30: R file of R code used to analyse survey data.
5. R code for Kidney Carer Survey_PDF_2022-08-30: PDF file of R code used to analyse survey data.
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Extract the list of locations of the 1,424 cameras as described in the Official Bulletin of the City of Paris of 1 February 2019 To make this list available according to the principles of Open Data (open license, standard data format) To geotagger these locations in order to view them on a map (in progress, 707 of 1424, see map) There are actually two lists of locations: — Annex 1 (1 391 pitches): the Video Protection Plan for the Police Prefecture — Annex 2 (890 locations): the video protection plan for Paris, list of cameras visible by authorised agents of the City of Paris These two lists have many locations in common. NextInpact summarised the situation in this article. The source code is available here: https://github.com/ColinMaudry/geo-videoprotection-paris Modus operandi Convert PDF to MS Excel file using online tool PDFtables.com Cleaning non-data text in LibreOffice
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License information was derived automatically
Sample data for exercises in Further Adventures in Data Cleaning.