3 datasets found
  1. f

    Downregulated pathways by GSEA from active UC lesions common to three gene...

    • figshare.com
    xls
    Updated Jun 1, 2023
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    Christopher J. Cardinale; Zhi Wei; Jin Li; Junfei Zhu; Mengnan Gu; Robert N. Baldassano; Struan F. A. Grant; Hakon Hakonarson (2023). Downregulated pathways by GSEA from active UC lesions common to three gene expression data sets. [Dataset]. http://doi.org/10.1371/journal.pone.0096153.t003
    Explore at:
    xlsAvailable download formats
    Dataset updated
    Jun 1, 2023
    Dataset provided by
    PLOS ONE
    Authors
    Christopher J. Cardinale; Zhi Wei; Jin Li; Junfei Zhu; Mengnan Gu; Robert N. Baldassano; Struan F. A. Grant; Hakon Hakonarson
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    NES: normalized enrichment score from GSEA; FDR Q-value calculated from permutation.

  2. d

    Historical Land-Cover Change and Land-Use Conversions Global Dataset

    • datadiscoverystudio.org
    • data.cnra.ca.gov
    • +4more
    netcdf-3, xml
    Updated Sep 6, 2012
    + more versions
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    UI-UC/ATMO > Department of Atmospheric Sciences, University of Illinois at Urbana-Champaign (2012). Historical Land-Cover Change and Land-Use Conversions Global Dataset [Dataset]. http://datadiscoverystudio.org/geoportal/rest/metadata/item/0286a1d1675d4ccf9f8958af64f391cc/html
    Explore at:
    netcdf-3(50), xml(1)Available download formats
    Dataset updated
    Sep 6, 2012
    Dataset authored and provided by
    UI-UC/ATMO > Department of Atmospheric Sciences, University of Illinois at Urbana-Champaign
    Area covered
    Earth
    Description

    A set of three estimates of land-cover types and annual transformations of land use are provided on a global 0.5 x0.5 degree lat/lon grid at annual time steps. The longest of the three estimates spans 1770-2010. The dataset presented here takes into account land-cover change due to four major land-use/management activities: (1) cropland expansion and abandonment, (2) pastureland expansion and abandonment, (3) urbanization, and (4) secondary forest regrowth due to wood harvest. Due to uncertainties associated with estimating historical agricultural (crops and pastures) land use, the study uses three widely accepted global reconstruction of cropland and pastureland in combination with common wood harvest and urban land data set to provide three distinct estimates of historical land-cover change and underlying land-use conversions. Hence, these distinct historical reconstructions offer a wide range of plausible regional estimates of uncertainty and extent to which different ecosystem have undergone changes. The three estimates use a consistent methodology, and start with a common land-cover map during pre-industrial conditions (year 1765), taking different courses as determined by the land-use/management datasets (cropland, pastureland, urbanization and wood harvest) to attain forest area distributions close to satellite estimates of forests for contemporary period. The satellite based estimates of forest area are based on MODIS sensor. All data uses the WGS84 spatial coordinate system for mapping.

  3. f

    Upregulated pathways by GSEA from active UC lesions common to three gene...

    • figshare.com
    xls
    Updated Dec 2, 2015
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    Christopher J. Cardinale; Zhi Wei; Jin Li; Junfei Zhu; Mengnan Gu; Robert N. Baldassano; Struan F. A. Grant; Hakon Hakonarson (2015). Upregulated pathways by GSEA from active UC lesions common to three gene expression data sets. [Dataset]. http://doi.org/10.1371/journal.pone.0096153.t002
    Explore at:
    xlsAvailable download formats
    Dataset updated
    Dec 2, 2015
    Dataset provided by
    PLOS ONE
    Authors
    Christopher J. Cardinale; Zhi Wei; Jin Li; Junfei Zhu; Mengnan Gu; Robert N. Baldassano; Struan F. A. Grant; Hakon Hakonarson
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    The second column gives the normalized enrichment score (NES) from GSEA analysis, the third column the FDR Q-value calculated by permutation, and the fourth column the functional category of the pathway.

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Click to copy link
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Christopher J. Cardinale; Zhi Wei; Jin Li; Junfei Zhu; Mengnan Gu; Robert N. Baldassano; Struan F. A. Grant; Hakon Hakonarson (2023). Downregulated pathways by GSEA from active UC lesions common to three gene expression data sets. [Dataset]. http://doi.org/10.1371/journal.pone.0096153.t003

Downregulated pathways by GSEA from active UC lesions common to three gene expression data sets.

Related Article
Explore at:
xlsAvailable download formats
Dataset updated
Jun 1, 2023
Dataset provided by
PLOS ONE
Authors
Christopher J. Cardinale; Zhi Wei; Jin Li; Junfei Zhu; Mengnan Gu; Robert N. Baldassano; Struan F. A. Grant; Hakon Hakonarson
License

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Description

NES: normalized enrichment score from GSEA; FDR Q-value calculated from permutation.

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