65 datasets found
  1. C

    COVID-19 Cases, Tests, and Deaths by ZIP Code - Historical

    • data.cityofchicago.org
    • healthdata.gov
    • +2more
    Updated May 23, 2024
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    City of Chicago (2024). COVID-19 Cases, Tests, and Deaths by ZIP Code - Historical [Dataset]. https://data.cityofchicago.org/Health-Human-Services/COVID-19-Cases-Tests-and-Deaths-by-ZIP-Code-Histor/yhhz-zm2v
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    kml, xml, csv, kmz, xlsx, application/geo+jsonAvailable download formats
    Dataset updated
    May 23, 2024
    Dataset authored and provided by
    City of Chicago
    Description

    NOTE: This dataset has been retired and marked as historical-only.

    Only Chicago residents are included based on the home ZIP Code as provided by the medical provider. If a ZIP was missing or was not valid, it is displayed as "Unknown".

    Cases with a positive molecular (PCR) or antigen test are included in this dataset. Cases are counted based on the week the test specimen was collected. For privacy reasons, until a ZIP Code reaches five cumulative cases, both the weekly and cumulative case counts will be blank. Therefore, summing the “Cases - Weekly” column is not a reliable way to determine case totals. Deaths are those that have occurred among cases based on the week of death.

    For tests, each test is counted once, based on the week the test specimen was collected. Tests performed prior to 3/1/2020 are not included. Test counts include multiple tests for the same person (a change made on 10/29/2020). PCR and antigen tests reported to Chicago Department of Public Health (CDPH) through electronic lab reporting are included. Electronic lab reporting has taken time to onboard and testing availability has shifted over time, so these counts are likely an underestimate of community infection.

    The “Percent Tested Positive” columns are calculated by dividing the number of positive tests by the number of total tests . Because of the data limitations for the Tests columns, such as persons being tested multiple times as a requirement for employment, these percentages may vary in either direction from the actual disease prevalence in the ZIP Code.

    All data are provisional and subject to change. Information is updated as additional details are received.

    To compare ZIP Codes to Chicago Community Areas, please see http://data.cmap.illinois.gov/opendata/uploads/CKAN/NONCENSUS/ADMINISTRATIVE_POLITICAL_BOUNDARIES/CCAzip.pdf. Both ZIP Codes and Community Areas are also geographic datasets on this data portal.

    Data Source: Illinois National Electronic Disease Surveillance System, Cook County Medical Examiner’s Office, Illinois Vital Records, American Community Survey (2018)

  2. d

    COVID-19 Daily Rolling Average Case, Death, and Hospitalization Rates -...

    • catalog.data.gov
    • data.cityofchicago.org
    • +1more
    Updated May 24, 2024
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    data.cityofchicago.org (2024). COVID-19 Daily Rolling Average Case, Death, and Hospitalization Rates - Historical [Dataset]. https://catalog.data.gov/dataset/covid-19-daily-rolling-average-case-and-death-rates
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    Dataset updated
    May 24, 2024
    Dataset provided by
    data.cityofchicago.org
    Description

    NOTE: This dataset has been retired and marked as historical-only. This dataset is a companion to the COVID-19 Daily Cases and Deaths dataset (https://data.cityofchicago.org/d/naz8-j4nc). The major difference in this dataset is that the case, death, and hospitalization corresponding rates per 100,000 population are not those for the single date indicated. They are rolling averages for the seven-day period ending on that date. This rolling average is used to account for fluctuations that may occur in the data, such as fewer cases being reported on weekends, and small numbers. The intent is to give a more representative view of the ongoing COVID-19 experience, less affected by what is essentially noise in the data. All rates are per 100,000 population in the indicated group, or Chicago, as a whole, for “Total” columns. Only Chicago residents are included based on the home address as provided by the medical provider. Cases with a positive molecular (PCR) or antigen test are included in this dataset. Cases are counted based on the date the test specimen was collected. Deaths among cases are aggregated by day of death. Hospitalizations are reported by date of first hospital admission. Demographic data are based on what is reported by medical providers or collected by CDPH during follow-up investigation. Denominators are from the U.S. Census Bureau American Community Survey 1-year estimate for 2018 and can be seen in the Citywide, 2018 row of the Chicago Population Counts dataset (https://data.cityofchicago.org/d/85cm-7uqa). All data are provisional and subject to change. Information is updated as additional details are received and it is, in fact, very common for recent dates to be incomplete and to be updated as time goes on. At any given time, this dataset reflects cases and deaths currently known to CDPH. Numbers in this dataset may differ from other public sources due to definitions of COVID-19-related cases and deaths, sources used, how cases and deaths are associated to a specific date, and similar factors. Data Source: Illinois National Electronic Disease Surveillance System, Cook County Medical Examiner’s Office, U.S. Census Bureau American Community Survey

  3. Total number of U.S. COVID-19 cases as of March 10, 2023, by state

    • statista.com
    Updated May 15, 2024
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    Statista (2024). Total number of U.S. COVID-19 cases as of March 10, 2023, by state [Dataset]. https://www.statista.com/statistics/1102807/coronavirus-covid19-cases-number-us-americans-by-state/
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    Dataset updated
    May 15, 2024
    Dataset authored and provided by
    Statistahttp://statista.com/
    Area covered
    United States
    Description

    As of March 10, 2023, the state with the highest number of COVID-19 cases was California. Almost 104 million cases have been reported across the United States, with the states of California, Texas, and Florida reporting the highest numbers.

    From an epidemic to a pandemic The World Health Organization declared the COVID-19 outbreak a pandemic on March 11, 2020. The term pandemic refers to multiple outbreaks of an infectious illness threatening multiple parts of the world at the same time. When the transmission is this widespread, it can no longer be traced back to the country where it originated. The number of COVID-19 cases worldwide has now reached over 669 million.

    The symptoms and those who are most at risk Most people who contract the virus will suffer only mild symptoms, such as a cough, a cold, or a high temperature. However, in more severe cases, the infection can cause breathing difficulties and even pneumonia. Those at higher risk include older persons and people with pre-existing medical conditions, including diabetes, heart disease, and lung disease. People aged 85 years and older have accounted for around 27 percent of all COVID-19 deaths in the United States, although this age group makes up just two percent of the U.S. population

  4. A

    ‘COVID-19 Cases, Tests, and Deaths by ZIP Code’ analyzed by Analyst-2

    • analyst-2.ai
    Updated Feb 13, 2022
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    Analyst-2 (analyst-2.ai) / Inspirient GmbH (inspirient.com) (2022). ‘COVID-19 Cases, Tests, and Deaths by ZIP Code’ analyzed by Analyst-2 [Dataset]. https://analyst-2.ai/analysis/data-gov-covid-19-cases-tests-and-deaths-by-zip-code-237f/dcd11861/?iid=010-728&v=presentation
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    Dataset updated
    Feb 13, 2022
    Dataset authored and provided by
    Analyst-2 (analyst-2.ai) / Inspirient GmbH (inspirient.com)
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Analysis of ‘COVID-19 Cases, Tests, and Deaths by ZIP Code’ provided by Analyst-2 (analyst-2.ai), based on source dataset retrieved from https://catalog.data.gov/dataset/04f6ebfb-8a04-45ff-9335-984cd5a4e200 on 13 February 2022.

    --- Dataset description provided by original source is as follows ---

    This is the place to look for important information about how to use this dataset, so please expand this box and read on!

    This is the source data for some of the metrics available at https://www.chicago.gov/city/en/sites/covid-19/home/latest-data.html.

    For all datasets related to COVID-19, see https://data.cityofchicago.org/browse?limitTo=datasets&sortBy=alpha&tags=covid-19.

    Only Chicago residents are included based on the home ZIP Code as provided by the medical provider. If a ZIP was missing or was not valid, it is displayed as "Unknown".

    Cases with a positive molecular (PCR) or antigen test are included in this dataset. Cases are counted based on the week the test specimen was collected. For privacy reasons, until a ZIP Code reaches five cumulative cases, both the weekly and cumulative case counts will be blank. Therefore, summing the “Cases - Weekly” column is not a reliable way to determine case totals. Deaths are those that have occurred among cases based on the week of death.

    For tests, each test is counted once, based on the week the test specimen was collected. Tests performed prior to 3/1/2020 are not included. Test counts include multiple tests for the same person (a change made on 10/29/2020). PCR and antigen tests reported to Chicago Department of Public Health (CDPH) through electronic lab reporting are included. Electronic lab reporting has taken time to onboard and testing availability has shifted over time, so these counts are likely an underestimate of community infection.

    The “Percent Tested Positive” columns are calculated by dividing the number of positive tests by the number of total tests . Because of the data limitations for the Tests columns, such as persons being tested multiple times as a requirement for employment, these percentages may vary in either direction from the actual disease prevalence in the ZIP Code.

    All data are provisional and subject to change. Information is updated as additional details are received.

    To compare ZIP Codes to Chicago Community Areas, please see http://data.cmap.illinois.gov/opendata/uploads/CKAN/NONCENSUS/ADMINISTRATIVE_POLITICAL_BOUNDARIES/CCAzip.pdf. Both ZIP Codes and Community Areas are also geographic datasets on this data portal.

    Data Source: Illinois National Electronic Disease Surveillance System, Cook County Medical Examiner’s Office, Illinois Vital Records, American Community Survey (2018)

    --- Original source retains full ownership of the source dataset ---

  5. COVID-19 death rates in the United States as of March 10, 2023, by state

    • statista.com
    Updated May 15, 2024
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    Statista (2024). COVID-19 death rates in the United States as of March 10, 2023, by state [Dataset]. https://www.statista.com/statistics/1109011/coronavirus-covid19-death-rates-us-by-state/
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    Dataset updated
    May 15, 2024
    Dataset authored and provided by
    Statistahttp://statista.com/
    Area covered
    United States
    Description

    As of March 10, 2023, the death rate from COVID-19 in the state of New York was 397 per 100,000 people. New York is one of the states with the highest number of COVID-19 cases.

  6. f

    Data_Sheet_1_T-Cell Subsets and Interleukin-10 Levels Are Predictors of...

    • frontiersin.figshare.com
    pdf
    Updated Jun 15, 2023
    + more versions
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    Amal F. Alshammary; Jawaher M. Alsughayyir; Khalid K. Alharbi; Abdulrahman M. Al-Sulaiman; Haifa F. Alshammary; Heba F. Alshammary (2023). Data_Sheet_1_T-Cell Subsets and Interleukin-10 Levels Are Predictors of Severity and Mortality in COVID-19: A Systematic Review and Meta-Analysis.pdf [Dataset]. http://doi.org/10.3389/fmed.2022.852749.s001
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    pdfAvailable download formats
    Dataset updated
    Jun 15, 2023
    Dataset provided by
    Frontiers
    Authors
    Amal F. Alshammary; Jawaher M. Alsughayyir; Khalid K. Alharbi; Abdulrahman M. Al-Sulaiman; Haifa F. Alshammary; Heba F. Alshammary
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    BackgroundMany COVID-19 patients reveal a marked decrease in their lymphocyte counts, a condition that translates clinically into immunodepression and is common among these patients. Outcomes for infected patients vary depending on their lymphocytopenia status, especially their T-cell counts. Patients are more likely to recover when lymphocytopenia is resolved. When lymphocytopenia persists, severe complications can develop and often lead to death. Similarly, IL-10 concentration is elevated in severe COVID-19 cases and may be associated with the depression observed in T-cell counts. Accordingly, this systematic review and meta-analysis aims to analyze T-cell subsets and IL-10 levels among COVID-19 patients. Understanding the underlying mechanisms of the immunodepression observed in COVID-19, and its consequences, may enable early identification of disease severity and reduction of overall morbidity and mortality.MethodsA systematic search was conducted covering PubMed MEDLINE, Scopus, Web of Science, and EBSCO databases for journal articles published from December 1, 2019 to March 14, 2021. In addition, we reviewed bibliographies of relevant reviews and the medRxiv preprint server for eligible studies. Our search covered published studies reporting laboratory parameters for T-cell subsets (CD4/CD8) and IL-10 among confirmed COVID-19 patients. Six authors carried out the process of data screening, extraction, and quality assessment independently. The DerSimonian-Laird random-effect model was performed for this meta-analysis, and the standardized mean difference (SMD) and 95% confidence interval (CI) were calculated for each parameter.ResultsA total of 52 studies from 11 countries across 3 continents were included in this study. Compared with mild and survivor COVID-19 cases, severe and non-survivor cases had lower counts of CD4/CD8 T-cells and higher levels of IL-10.ConclusionOur findings reveal that the level of CD4/CD8 T-cells and IL-10 are reliable predictors of severity and mortality in COVID-19 patients. The study protocol is registered with the International Prospective Register of Systematic Reviews (PROSPERO); registration number CRD42020218918.Systematic Review Registrationhttps://www.crd.york.ac.uk/prospero/display_record.php?ID=CRD42020218918, identifier: CRD42020218918.

  7. C

    Covid 60655

    • data.cityofchicago.org
    Updated May 23, 2024
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    City of Chicago (2024). Covid 60655 [Dataset]. https://data.cityofchicago.org/widgets/mxmg-zkv6?mobile_redirect=true
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    kml, csv, xml, kmz, xlsx, application/geo+jsonAvailable download formats
    Dataset updated
    May 23, 2024
    Authors
    City of Chicago
    Description

    This is the place to look for important information about how to use this dataset, so please expand this box and read on!

    This is the source data for some of the metrics available at https://www.chicago.gov/city/en/sites/covid-19/home/latest-data.html.

    For all datasets related to COVID-19, see https://data.cityofchicago.org/browse?limitTo=datasets&sortBy=alpha&tags=covid-19.

    Only Chicago residents are included based on the home ZIP Code as provided by the medical provider. If a ZIP was missing or was not valid, it is displayed as "Unknown".

    Confirmed cases are counted based on the week the test specimen was collected. For privacy reasons, until a ZIP Code reaches five cumulative cases, both the weekly and cumulative case counts will be blank. Therefore, summing the “Cases - Weekly” column is not a reliable way to determine case totals. Deaths are those that have occurred among confirmed cases based on the week of death.

    For tests, each individual is counted once, based on the week the test specimen was collected. Tests performed prior to 3/1/2020 are not included. Test counts do not include multiple tests for the same person or some negative tests not reported to CDPH.

    The “Percent Tested Positive” columns are calculated by dividing the corresponding Cases and Tests columns. Because of the data limitations for the Tests columns, as well as strict criteria for performing COVID-19 tests, these percentages may vary in either direction from the actual disease prevalence in the ZIP Code. Of particular note, these rates do not represent population-level disease surveillance.

    Population counts are from the 2010 Decennial Census.

    All data are provisional and subject to change. Information is updated as additional details are received.

    To compare ZIP Codes to Chicago Community Areas, please see http://data.cmap.illinois.gov/opendata/uploads/CKAN/NONCENSUS/ADMINISTRATIVE_POLITICAL_BOUNDARIES/CCAzip.pdf. Both ZIP Codes and Community Areas are also geographic datasets on this data portal.

    Data Source: Illinois National Electronic Disease Surveillance System, Cook County Medical Examiner’s Office, Illinois Vital Records

  8. d

    Medical Examiner Case Archive

    • catalog.data.gov
    • datacatalog.cookcountyil.gov
    • +2more
    Updated Jul 19, 2025
    + more versions
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    datacatalog.cookcountyil.gov (2025). Medical Examiner Case Archive [Dataset]. https://catalog.data.gov/dataset/medical-examiner-case-archive
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    Dataset updated
    Jul 19, 2025
    Dataset provided by
    datacatalog.cookcountyil.gov
    Description

    Effective April 1, 2022, the Cook County Medical Examiner’s Office no longer takes jurisdiction over hospital, nursing home or hospice COVID-19 deaths unless there is another factor that falls within the Office’s jurisdiction. Data continues to be collected for COVID-19 deaths in Cook County on the Illinois Dept. of Public Health COVID-19 dashboard (https://dph.illinois.gov/covid19/data.html). This contains information about deaths that occurred in Cook County that were under the Medical Examiner’s jurisdiction. Not all deaths that occur in Cook County are reported to the Medical Examiner or fall under the jurisdiction of the Medical Examiner. The Medical Examiner’s Office determines cause and manner of death for those cases that fall under its jurisdiction. Cause of death describes the reason the person died. This dataset includes information from deaths starting in August 2014 to the present, with information updated daily. Changes: December 16, 2022: The Cook County Commissioner District field now reflects the boundaries that went into effect December 5, 2022. September 8, 2023: The Primary Cause field is now a combination of the Primary Cause Line A, Line B, and Line C fields.

  9. COVID-19 Coronavirus Romania

    • kaggle.com
    Updated May 15, 2020
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    Oriana Oniciuc (2020). COVID-19 Coronavirus Romania [Dataset]. https://www.kaggle.com/orianao/covid19-coronavirus-romania
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    CroissantCroissant is a format for machine-learning datasets. Learn more about this at mlcommons.org/croissant.
    Dataset updated
    May 15, 2020
    Dataset provided by
    Kaggle
    Authors
    Oriana Oniciuc
    Area covered
    Romania
    Description

    Context

    The dataset analyses the impact of the COVID-19 pandemic in Romania.

    Content

    The dataset contains 4 columns: * date - the date of each record, starting from 26 February 2020 * cases - the cumulative number of cases reported each day, in the first days of the pandemic there were multiple press releases about the number of cases, but the sum per day is already aggregated * recovered - the cumulative number of recovered cases * deaths - the cumulative number of deaths * tests - number of tests performed by the date, for the dates with no information, the difference split equally in that interval

    Acknowledgements

    This data was collected from: * https://en.wikipedia.org/wiki/2020_coronavirus_pandemic_in_Romania * https://www.digi24.ro/stiri/actualitate/informatii-oficiale-despre-coronavirus-in-romania-1266261 * https://stirioficiale.ro/informatii

    Other great data souces: * http://www.ms.ro/comunicate/ * http://www.cnscbt.ro/ * https://instnsp.maps.arcgis.com/apps/opsdashboard/index.html#/5eced796595b4ee585bcdba03e30c127

    Thank you for the photo: * https://playtech.ro/stiri/o-minciuna-despre-coronavirus-il-va-costa-ani-grei-de-inchisoare-ce-a-facut-un-barbat-din-campia-turzii-95782

    Inspiration

    Thanks, https://www.kaggle.com/bjoernjostein/corona-virus-in-norway!

  10. COVID-19 Outcomes by Vaccination Status - Historical

    • healthdata.gov
    • data.cityofchicago.org
    • +2more
    application/rdfxml +5
    Updated Apr 8, 2025
    + more versions
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    data.cityofchicago.org (2025). COVID-19 Outcomes by Vaccination Status - Historical [Dataset]. https://healthdata.gov/dataset/COVID-19-Outcomes-by-Vaccination-Status-Historical/fmz3-7y63
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    application/rdfxml, tsv, csv, application/rssxml, json, xmlAvailable download formats
    Dataset updated
    Apr 8, 2025
    Dataset provided by
    data.cityofchicago.org
    Description

    NOTE: This dataset has been retired and marked as historical-only.

    Weekly rates of COVID-19 cases, hospitalizations, and deaths among people living in Chicago by vaccination status and age.

    Rates for fully vaccinated and unvaccinated begin the week ending April 3, 2021 when COVID-19 vaccines became widely available in Chicago. Rates for boosted begin the week ending October 23, 2021 after booster shots were recommended by the Centers for Disease Control and Prevention (CDC) for adults 65+ years old and adults in certain populations and high risk occupational and institutional settings who received Pfizer or Moderna for their primary series or anyone who received the Johnson & Johnson vaccine.

    Chicago residency is based on home address, as reported in the Illinois Comprehensive Automated Immunization Registry Exchange (I-CARE) and Illinois National Electronic Disease Surveillance System (I-NEDSS).

    Outcomes: • Cases: People with a positive molecular (PCR) or antigen COVID-19 test result from an FDA-authorized COVID-19 test that was reported into I-NEDSS. A person can become re-infected with SARS-CoV-2 over time and so may be counted more than once in this dataset. Cases are counted by week the test specimen was collected. • Hospitalizations: COVID-19 cases who are hospitalized due to a documented COVID-19 related illness or who are admitted for any reason within 14 days of a positive SARS-CoV-2 test. Hospitalizations are counted by week of hospital admission. • Deaths: COVID-19 cases who died from COVID-19-related health complications as determined by vital records or a public health investigation. Deaths are counted by week of death.

    Vaccination status: • Fully vaccinated: Completion of primary series of a U.S. Food and Drug Administration (FDA)-authorized or approved COVID-19 vaccine at least 14 days prior to a positive test (with no other positive tests in the previous 45 days). • Boosted: Fully vaccinated with an additional or booster dose of any FDA-authorized or approved COVID-19 vaccine received at least 14 days prior to a positive test (with no other positive tests in the previous 45 days). • Unvaccinated: No evidence of having received a dose of an FDA-authorized or approved vaccine prior to a positive test.

    CLARIFYING NOTE: Those who started but did not complete all recommended doses of an FDA-authorized or approved vaccine prior to a positive test (i.e., partially vaccinated) are excluded from this dataset.

    Incidence rates for fully vaccinated but not boosted people (Vaccinated columns) are calculated as total fully vaccinated but not boosted with outcome divided by cumulative fully vaccinated but not boosted at the end of each week. Incidence rates for boosted (Boosted columns) are calculated as total boosted with outcome divided by cumulative boosted at the end of each week. Incidence rates for unvaccinated (Unvaccinated columns) are calculated as total unvaccinated with outcome divided by total population minus cumulative boosted, fully, and partially vaccinated at the end of each week. All rates are multiplied by 100,000.

    Incidence rate ratios (IRRs) are calculated by dividing the weekly incidence rates among unvaccinated people by those among fully vaccinated but not boosted and boosted people.

    Overall age-adjusted incidence rates and IRRs are standardized using the 2000 U.S. Census standard population.

    Population totals are from U.S. Census Bureau American Community Survey 1-year estimates for 2019.

    All data are provisional and subject to change. Information is updated as additional details are received and it is, in fact, very common for recent dates to be incomplete and to be updated as time goes on. This dataset reflects data known to CDPH at the time when the dataset is updated each week.

    Numbers in this dataset may differ from other public sources due to when data are reported and how City of Chicago boundaries are defined.

    For all datasets related to COVID-19, see https://data.cityofchic

  11. Z

    Dataset: Interleukin (IL)-1 blocking agents for the treatment of COVID-19 A...

    • data.niaid.nih.gov
    • explore.openaire.eu
    Updated Jan 17, 2022
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    Hróbjartsson, Asbjørn (2022). Dataset: Interleukin (IL)-1 blocking agents for the treatment of COVID-19 A living systematic review [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_5853926
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    Dataset updated
    Jan 17, 2022
    Dataset provided by
    Tovey, David
    Boutron, Isabelle
    Davidson, Mauricia
    Moran, Conor
    Ravaud, Philippe
    Rada, Gabriel
    Devane, Declan
    Grasselli, Giacomo
    Evrenoglou, Theodoros
    Ferrand, Gabriel
    Menon, Sonia
    Bonnet, Hillary
    Henschke, Nicholas
    Meerpohl, Joerg J
    Graña, Carolina
    Chaimani, Anna
    Cogo, Elise
    Ghosn, Lina
    Riveros, Carolina
    Hróbjartsson, Asbjørn
    Villanueva, Gemma
    Kapp, Philipp
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    This dataset is used in the analyses reported in the review entitled "Interleukin (IL)-1 blocking agents for the treatment of COVID-19 A living systematic review"

    IL-1 blockers are beneficial in inflammation-associated pathologies, such as rheumatoid arthritis (Mertens 2009) and possibly also in the subgroup of patients with severe sepsis where the inflammasome pathway is involved (Shakoory 2016). Similar benefits were reported in children with secondary macrophage activation syndrome, including cases triggered by viral infections (Mehta 2020b).

    In this review we aimed to assess the effectiveness of IL-1 blocking agents compared to placebo, standard of care or no treatment on outcomes in patients with COVID-19.

    This review is part of a larger project: the COVID-NMA project. We set-up a platform (https://covid-nma.com) where all our results are made available and updated bi-weekly.

  12. m

    Data from: Infection-induced vascular inflammation in COVID-19 links focal...

    • data.mendeley.com
    Updated Nov 18, 2024
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    Rebeka Fekete (2024). Infection-induced vascular inflammation in COVID-19 links focal microglial dysfunction with neuropathologies through IL-1/IL-6-related systemic inflammatory states [Dataset]. http://doi.org/10.17632/whdgg3tfmt.1
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    Dataset updated
    Nov 18, 2024
    Authors
    Rebeka Fekete
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    COVID-19 is associated with diverse neurological abnormalities, which predict poor outcome in patients. However, the mechanisms whereby infection-induced inflammation could affect complex neuropathologies in COVID-19 are unclear. We hypothesized that microglia, the resident immune cells of brain, are centrally involved in this process. To study this, we developed an autopsy platform allowing the integration of molecular anatomy-, protein- and mRNA data sets in post-mortem mirror blocks of brain and peripheral organ samples from COVID-19 cases. Nanoscale microscopy, single-cell RNA sequencing and analysis of inflammatory and metabolic signatures revealed distinct mechanisms of microglial dysfunction associated with cerebral SARS-CoV-2 infection. We observed focal loss of microglial P2Y12R at sites of virus-associated vascular inflammation together with dysregulated microglia-vascular-astrocyte interactions, CX3CR1-CX3CL1 axis deficits and metabolic failure in severely affected medullary autonomic nuclei and other brain areas. Microglial dysfunction associated with mitochondrial injury and cell loss occurs at sites of excessive synapse- and myelin phagocytosis and loss of glutamatergic terminals in line with proteomic changes of synapse assembly, metabolism and neuronal injury. These changes parallel increased numbers of perivascular macrophages in the medulla. While central and systemic viral load is strongly linked in individual patients, the regionally heterogenous microglial reactivity in the brain correlated with the extent of central and systemic inflammation related to IL-1 / IL-6 via virus-sensing pattern recognition receptors (PRRs) and inflammasome activation pathways. Thus, SARS-CoV-2-induced central and systemic inflammation might lead to a primarily glio-vascular failure in the brain, which could be a common contributor to diverse COVID-19-related neuropathologies.

  13. p

    Counts of COVID-19 reported in ISRAEL: 2019-2021

    • tycho.pitt.edu
    • catalog.midasnetwork.us
    Updated Dec 11, 2022
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    MIDAS Coordination Center (2022). Counts of COVID-19 reported in ISRAEL: 2019-2021 [Dataset]. http://doi.org/10.25337/T7/ptycho.v2.0/IL.840539006
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    Dataset updated
    Dec 11, 2022
    Dataset provided by
    Project Tycho
    Authors
    MIDAS Coordination Center
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    2019 - 2021
    Area covered
    Israel
    Description

    Records of reported Counts of COVID-19 case counts in Israel from 2019-2021. Download is a zipped CSV file with readme.

  14. f

    Data from: Serum Proteomics in COVID-19 Patients: Altered Coagulation and...

    • acs.figshare.com
    xlsx
    Updated May 31, 2023
    + more versions
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    Angelo D’Alessandro; Tiffany Thomas; Monika Dzieciatkowska; Ryan C. Hill; Richard O. Francis; Krystalyn E. Hudson; James C. Zimring; Eldad A. Hod; Steven L. Spitalnik; Kirk C. Hansen (2023). Serum Proteomics in COVID-19 Patients: Altered Coagulation and Complement Status as a Function of IL‑6 Level [Dataset]. http://doi.org/10.1021/acs.jproteome.0c00365.s002
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    xlsxAvailable download formats
    Dataset updated
    May 31, 2023
    Dataset provided by
    ACS Publications
    Authors
    Angelo D’Alessandro; Tiffany Thomas; Monika Dzieciatkowska; Ryan C. Hill; Richard O. Francis; Krystalyn E. Hudson; James C. Zimring; Eldad A. Hod; Steven L. Spitalnik; Kirk C. Hansen
    License

    Attribution-NonCommercial 4.0 (CC BY-NC 4.0)https://creativecommons.org/licenses/by-nc/4.0/
    License information was derived automatically

    Description

    Over 5 million people around the world have tested positive for the beta coronavirus SARS-CoV-2 as of May 29, 2020, a third of which are in the United States alone. These infections are associated with the development of a disease known as COVID-19, which is characterized by several symptoms, including persistent dry cough, shortness of breath, chills, muscle pain, headache, loss of taste or smell, and gastrointestinal distress. COVID-19 has been characterized by elevated mortality (over 100 thousand people have already died in the US alone), mostly due to thromboinflammatory complications that impair lung perfusion and systemic oxygenation in the most severe cases. While the levels of pro-inflammatory cytokines such as interleukin-6 (IL-6) have been associated with the severity of the disease, little is known about the impact of IL-6 levels on the proteome of COVID-19 patients. The present study provides the first proteomics analysis of sera from COVID-19 patients, stratified by circulating levels of IL-6, and correlated to markers of inflammation and renal function. As a function of IL-6 levels, we identified significant dysregulation in serum levels of various coagulation factors, accompanied by increased levels of antifibrinolytic components, including several serine protease inhibitors (SERPINs). These were accompanied by up-regulation of the complement cascade and antimicrobial enzymes, especially in subjects with the highest levels of IL-6, which is consistent with an exacerbation of the acute phase response in these subjects. Although our results are observational, they highlight a clear increase in the levels of inhibitory components of the fibrinolytic cascade in severe COVID-19 disease, providing potential clues related to the etiology of coagulopathic complications in COVID-19 and paving the way for potential therapeutic interventions, such as the use of pro-fibrinolytic agents. Raw data for this study are available through ProteomeXchange with identifier PXD020601.

  15. f

    Data_Sheet_1_Case report: Cytokine and miRNA profiling in multisystem...

    • figshare.com
    txt
    Updated Aug 1, 2024
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    Yun-Hao Tsai; Jun-Jie Hong; Chao-Min Cheng; Mei-Hsiu Cheng; Cheng-Han Chen; Min-Ling Hsieh; Kai-Sheng Hsieh; Ching-Fen Shen (2024). Data_Sheet_1_Case report: Cytokine and miRNA profiling in multisystem inflammatory syndrome in children.CSV [Dataset]. http://doi.org/10.3389/fmed.2024.1422588.s001
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    txtAvailable download formats
    Dataset updated
    Aug 1, 2024
    Dataset provided by
    Frontiers
    Authors
    Yun-Hao Tsai; Jun-Jie Hong; Chao-Min Cheng; Mei-Hsiu Cheng; Cheng-Han Chen; Min-Ling Hsieh; Kai-Sheng Hsieh; Ching-Fen Shen
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Multisystem inflammatory syndrome in children (MIS-C) is an imperative pediatric inflammatory condition closely linked to COVID-19, which garners substantial attention since the onset of the pandemic. Like Kawasaki illness, this condition is characterized by an overactive immune response, leading to symptoms including pyrexia, cardiac and renal complications. To elucidate the pathogenesis of MIS-C and identify potential biomarkers, we conducted an extensive examination of specific cytokines (IL-6, IL-1β, IL-6R, IL-10, and TNF-α) and microRNA (miRNA) expression profiles at various intervals (ranging from 3 to 20 days) in the peripheral blood sample of a severely affected MIS-C patient. Our investigation revealed a gradual decline in circulating levels of IL-6, IL-1β, IL-10, and TNF-α following intravenous immune globulin (IVIG) therapy. Notably, IL-6 exhibited a significant reduction from 74.30 to 1.49 pg./mL, while IL-6R levels remained consistently stable throughout the disease course. Furthermore, we observed an inverse correlation between the expression of hsa-miR-596 and hsa-miR-224-5p and the aforementioned cytokines. Our findings underscore a robust association between blood cytokine and miRNA concentrations and the severity of MIS-C. These insights enhance our understanding of the genetic regulatory mechanisms implicated in MIS-C pathogenesis, offering potential avenues for early biomarker detection and therapy monitoring through miRNA analysis.

  16. Z

    Dataset related to article "Thyrotoxicosis in patients with COVID-19: the...

    • data.niaid.nih.gov
    • zenodo.org
    Updated Dec 30, 2020
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    Mazziotti Gherardo (2020). Dataset related to article "Thyrotoxicosis in patients with COVID-19: the THYRCOV study" [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_4400273
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    Dataset updated
    Dec 30, 2020
    Dataset provided by
    Sandri Maria Teresa
    Lania G. Andrea
    Mazziotti Gherardo
    Mirani Marco
    Lavezzi Elisabetta
    Cellini Miriam
    Description

    This record contains data related to article "Thyrotoxicosis in patients with COVID-19: the THYRCOV study"

    Abstract

    Objective: This study assessed thyroid function in patients affected by the coronavirus disease-19 (COVID-19), based on the hypothesis that the cytokine storm associated with COVID-19 may influence thyroid function and/or the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) may directly act on thyroid cells, such as previously demonstrated for SARS-CoV-1 infection.

    Design and methods: This single-center study was retrospective and consisted in evaluating thyroid function tests and serum interleukin-6 (IL-6) values in 287 consecutive patients (193 males, median age: 66 years, range: 27-92) hospitalized for COVID-19 in non-intensive care units.

    Results: Fifty-eight patients (20.2%) were found with thyrotoxicosis (overt in 31 cases), 15 (5.2%) with hypothyroidism (overt in only 2 cases), and 214 (74.6%) with normal thyroid function. Serum thyrotropin (TSH) values were inversely correlated with age of patients (rho -0.27; P < 0.001) and IL-6 (rho -0.41; P < 0.001). In the multivariate analysis, thyrotoxicosis resulted to be significantly associated with higher IL-6 (odds ratio: 3.25, 95% confidence interval: 1.97-5.36; P < 0.001), whereas the association with age of patients was lost (P = 0.09).

    Conclusions: This study provides first evidence that COVID-19 may be associated with high risk of thyrotoxicosis in relationship with systemic immune activation induced by the SARS-CoV-2 infection.

  17. Provisional COVID-19 death counts and rates by month, jurisdiction of...

    • catalog.data.gov
    • data.virginia.gov
    • +3more
    Updated Jul 18, 2025
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    Centers for Disease Control and Prevention (2025). Provisional COVID-19 death counts and rates by month, jurisdiction of residence, and demographic characteristics [Dataset]. https://catalog.data.gov/dataset/provisional-covid-19-death-counts-and-rates-by-month-jurisdiction-of-residence-and-demogra
    Explore at:
    Dataset updated
    Jul 18, 2025
    Dataset provided by
    Centers for Disease Control and Preventionhttp://www.cdc.gov/
    Description

    This file contains COVID-19 death counts and rates by month and year of death, jurisdiction of residence (U.S., HHS Region) and demographic characteristics (sex, age, race and Hispanic origin, and age/race and Hispanic origin). United States death counts and rates include the 50 states, plus the District of Columbia. Deaths with confirmed or presumed COVID-19, coded to ICD–10 code U07.1. Number of deaths reported in this file are the total number of COVID-19 deaths received and coded as of the date of analysis and may not represent all deaths that occurred in that period. Counts of deaths occurring before or after the reporting period are not included in the file. Data during recent periods are incomplete because of the lag in time between when the death occurred and when the death certificate is completed, submitted to NCHS and processed for reporting purposes. This delay can range from 1 week to 8 weeks or more, depending on the jurisdiction and cause of death. Death counts should not be compared across jurisdictions. Data timeliness varies by state. Some states report deaths on a daily basis, while other states report deaths weekly or monthly. The ten (10) United States Department of Health and Human Services (HHS) regions include the following jurisdictions. Region 1: Connecticut, Maine, Massachusetts, New Hampshire, Rhode Island, Vermont; Region 2: New Jersey, New York; Region 3: Delaware, District of Columbia, Maryland, Pennsylvania, Virginia, West Virginia; Region 4: Alabama, Florida, Georgia, Kentucky, Mississippi, North Carolina, South Carolina, Tennessee; Region 5: Illinois, Indiana, Michigan, Minnesota, Ohio, Wisconsin; Region 6: Arkansas, Louisiana, New Mexico, Oklahoma, Texas; Region 7: Iowa, Kansas, Missouri, Nebraska; Region 8: Colorado, Montana, North Dakota, South Dakota, Utah, Wyoming; Region 9: Arizona, California, Hawaii, Nevada; Region 10: Alaska, Idaho, Oregon, Washington. Rates were calculated using the population estimates for 2021, which are estimated as of July 1, 2021 based on the Blended Base produced by the US Census Bureau in lieu of the April 1, 2020 decennial population count. The Blended Base consists of the blend of Vintage 2020 postcensal population estimates, 2020 Demographic Analysis Estimates, and 2020 Census PL 94-171 Redistricting File (see https://www2.census.gov/programs-surveys/popest/technical-documentation/methodology/2020-2021/methods-statement-v2021.pdf). Rate are based on deaths occurring in the specified week and are age-adjusted to the 2000 standard population using the direct method (see https://www.cdc.gov/nchs/data/nvsr/nvsr70/nvsr70-08-508.pdf). These rates differ from annual age-adjusted rates, typically presented in NCHS publications based on a full year of data and annualized weekly age-adjusted rates which have been adjusted to allow comparison with annual rates. Annualization rates presents deaths per year per 100,000 population that would be expected in a year if the observed period specific (weekly) rate prevailed for a full year. Sub-national death counts between 1-9 are suppressed in accordance with NCHS data confidentiality standards. Rates based on death counts less than 20 are suppressed in accordance with NCHS standards of reliability as specified in NCHS Data Presentation Standards for Proportions (available from: https://www.cdc.gov/nchs/data/series/sr_02/sr02_175.pdf.).

  18. Coronavirus England briefing, 9 July 2021

    • gov.uk
    Updated Jul 9, 2021
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    Department of Health and Social Care (2021). Coronavirus England briefing, 9 July 2021 [Dataset]. https://www.gov.uk/government/publications/coronavirus-england-briefing-9-july-2021
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    Dataset updated
    Jul 9, 2021
    Dataset provided by
    GOV.UKhttp://gov.uk/
    Authors
    Department of Health and Social Care
    Description

    The data includes:

    • case rate per 100,000 population
    • case rate per 100,000 population aged 60 years and over
    • percentage change in case rate per 100,000 from previous week
    • percentage of individuals tested positive
    • number of individuals tested per 100,000

    See the detailed data on the https://coronavirus.data.gov.uk/?_ga=2.59248237.1996501647.1611741463-1961839927.1610968060" class="govuk-link">progress of the coronavirus pandemic. This includes the number of people testing positive, case rates and deaths within 28 days of positive test by lower tier local authority.

    Also see guidance on coronavirus restrictions.

  19. f

    Table_1_Clinical and Immunological Factors That Distinguish COVID-19 From...

    • frontiersin.figshare.com
    docx
    Updated May 30, 2023
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    José Alberto Choreño-Parra; Luis Armando Jiménez-Álvarez; Alfredo Cruz-Lagunas; Tatiana Sofía Rodríguez-Reyna; Gustavo Ramírez-Martínez; Montserrat Sandoval-Vega; Diana Lizzeth Hernández-García; Eduardo M. Choreño-Parra; Yalbi I. Balderas-Martínez; Mariana Esther Martinez-Sánchez; Eduardo Márquez-García; Edda Sciutto; José Moreno-Rodríguez; José Omar Barreto-Rodríguez; Hazel Vázquez-Rojas; Gustavo Iván Centeno-Sáenz; Néstor Alvarado-Peña; Citlaltepetl Salinas-Lara; Carlos Sánchez-Garibay; David Galeana-Cadena; Gabriela Hernández; Criselda Mendoza-Milla; Andrea Domínguez; Julio Granados; Lula Mena-Hernández; Luis Ángel Pérez-Buenfil; Guillermo Domínguez-Cheritt; Carlos Cabello-Gutiérrez; Cesar Luna-Rivero; Jorge Salas-Hernández; Patricio Santillán-Doherty; Justino Regalado; Angélica Hernández-Martínez; Lorena Orozco; Federico Ávila-Moreno; Ethel A. García-Latorre; Carmen M. Hernández-Cárdenas; Shabaana A. Khader; Albert Zlotnik; Joaquín Zúñiga (2023). Table_1_Clinical and Immunological Factors That Distinguish COVID-19 From Pandemic Influenza A(H1N1).docx [Dataset]. http://doi.org/10.3389/fimmu.2021.593595.s001
    Explore at:
    docxAvailable download formats
    Dataset updated
    May 30, 2023
    Dataset provided by
    Frontiers
    Authors
    José Alberto Choreño-Parra; Luis Armando Jiménez-Álvarez; Alfredo Cruz-Lagunas; Tatiana Sofía Rodríguez-Reyna; Gustavo Ramírez-Martínez; Montserrat Sandoval-Vega; Diana Lizzeth Hernández-García; Eduardo M. Choreño-Parra; Yalbi I. Balderas-Martínez; Mariana Esther Martinez-Sánchez; Eduardo Márquez-García; Edda Sciutto; José Moreno-Rodríguez; José Omar Barreto-Rodríguez; Hazel Vázquez-Rojas; Gustavo Iván Centeno-Sáenz; Néstor Alvarado-Peña; Citlaltepetl Salinas-Lara; Carlos Sánchez-Garibay; David Galeana-Cadena; Gabriela Hernández; Criselda Mendoza-Milla; Andrea Domínguez; Julio Granados; Lula Mena-Hernández; Luis Ángel Pérez-Buenfil; Guillermo Domínguez-Cheritt; Carlos Cabello-Gutiérrez; Cesar Luna-Rivero; Jorge Salas-Hernández; Patricio Santillán-Doherty; Justino Regalado; Angélica Hernández-Martínez; Lorena Orozco; Federico Ávila-Moreno; Ethel A. García-Latorre; Carmen M. Hernández-Cárdenas; Shabaana A. Khader; Albert Zlotnik; Joaquín Zúñiga
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of coronavirus disease 2019 (COVID-19), is a global health threat with the potential to cause severe disease manifestations in the lungs. Although COVID-19 has been extensively characterized clinically, the factors distinguishing SARS-CoV-2 from other respiratory viruses are unknown. Here, we compared the clinical, histopathological, and immunological characteristics of patients with COVID-19 and pandemic influenza A(H1N1). We observed a higher frequency of respiratory symptoms, increased tissue injury markers, and a histological pattern of alveolar pneumonia in pandemic influenza A(H1N1) patients. Conversely, dry cough, gastrointestinal symptoms and interstitial lung pathology were observed in COVID-19 cases. Pandemic influenza A(H1N1) was characterized by higher levels of IL-1RA, TNF-α, CCL3, G-CSF, APRIL, sTNF-R1, sTNF-R2, sCD30, and sCD163. Meanwhile, COVID-19 displayed an immune profile distinguished by increased Th1 (IL-12, IFN-γ) and Th2 (IL-4, IL-5, IL-10, IL-13) cytokine levels, along with IL-1β, IL-6, CCL11, VEGF, TWEAK, TSLP, MMP-1, and MMP-3. Our data suggest that SARS-CoV-2 induces a dysbalanced polyfunctional inflammatory response that is different from the immune response against pandemic influenza A(H1N1). Furthermore, we demonstrated the diagnostic potential of some clinical and immune factors to differentiate both diseases. These findings might be relevant for the ongoing and future influenza seasons in the Northern Hemisphere, which are historically unique due to their convergence with the COVID-19 pandemic.

  20. Israel Official COVID data

    • kaggle.com
    Updated Oct 3, 2020
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    Ido Yoely (2020). Israel Official COVID data [Dataset]. https://www.kaggle.com/idoyo92/israel-official-covid-data/code
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    CroissantCroissant is a format for machine-learning datasets. Learn more about this at mlcommons.org/croissant.
    Dataset updated
    Oct 3, 2020
    Dataset provided by
    Kagglehttp://kaggle.com/
    Authors
    Ido Yoely
    Area covered
    Israel
    Description

    A country specific data of COVID19 cases in Israel. This data is published by the MOH and can be found on the official site. https://govextra.gov.il/ministry-of-health/corona/corona-virus/

    We have the regular suspects inside, with the much needed (In my opinion) test count.

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City of Chicago (2024). COVID-19 Cases, Tests, and Deaths by ZIP Code - Historical [Dataset]. https://data.cityofchicago.org/Health-Human-Services/COVID-19-Cases-Tests-and-Deaths-by-ZIP-Code-Histor/yhhz-zm2v

COVID-19 Cases, Tests, and Deaths by ZIP Code - Historical

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kml, xml, csv, kmz, xlsx, application/geo+jsonAvailable download formats
Dataset updated
May 23, 2024
Dataset authored and provided by
City of Chicago
Description

NOTE: This dataset has been retired and marked as historical-only.

Only Chicago residents are included based on the home ZIP Code as provided by the medical provider. If a ZIP was missing or was not valid, it is displayed as "Unknown".

Cases with a positive molecular (PCR) or antigen test are included in this dataset. Cases are counted based on the week the test specimen was collected. For privacy reasons, until a ZIP Code reaches five cumulative cases, both the weekly and cumulative case counts will be blank. Therefore, summing the “Cases - Weekly” column is not a reliable way to determine case totals. Deaths are those that have occurred among cases based on the week of death.

For tests, each test is counted once, based on the week the test specimen was collected. Tests performed prior to 3/1/2020 are not included. Test counts include multiple tests for the same person (a change made on 10/29/2020). PCR and antigen tests reported to Chicago Department of Public Health (CDPH) through electronic lab reporting are included. Electronic lab reporting has taken time to onboard and testing availability has shifted over time, so these counts are likely an underestimate of community infection.

The “Percent Tested Positive” columns are calculated by dividing the number of positive tests by the number of total tests . Because of the data limitations for the Tests columns, such as persons being tested multiple times as a requirement for employment, these percentages may vary in either direction from the actual disease prevalence in the ZIP Code.

All data are provisional and subject to change. Information is updated as additional details are received.

To compare ZIP Codes to Chicago Community Areas, please see http://data.cmap.illinois.gov/opendata/uploads/CKAN/NONCENSUS/ADMINISTRATIVE_POLITICAL_BOUNDARIES/CCAzip.pdf. Both ZIP Codes and Community Areas are also geographic datasets on this data portal.

Data Source: Illinois National Electronic Disease Surveillance System, Cook County Medical Examiner’s Office, Illinois Vital Records, American Community Survey (2018)

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