Daily count of NYC residents who tested positive for SARS-CoV-2, who were hospitalized with COVID-19, and deaths among COVID-19 patients.

Note that this dataset currently pulls from https://raw.githubusercontent.com/nychealth/coronavirus-data/master/trends/data-by-day.csv on a daily basis.

As of December 22, 2022, there have been 2.6 million cases of COVID-19 in New York City, as well as 200,189 hospitalizations, and 37,452 deaths. This statistic shows the number of COVID-19 cases, hospitalizations, and deaths in New York City as of December 22, 2022.

Note: This dataset was archived on 10/6/23. Statewide hospitalization data is available in the New York State Statewide COVID-19 Hospitalizations and Beds dataset.

This dataset includes the number of patients hospitalized, and number of patients in the intensive care unit (ICU) among patients with lab-confirmed COVID-19 disease by hospital region and reporting date. The primary goal of publishing this dataset is to provide users with timely information about hospitalizations among patients with lab-confirmed COVID-19 disease.

The data source for this dataset is the daily COVID-19 survey through the New York State Department of Health (NYSDOH) Health Electronic Response Data System (HERDS). Hospitals are required to complete this survey daily and data reflects the number of patients hospitalized and number of patients in the ICU reported by hospitals through the survey each day. These data include NYS resident and non-NYS resident hospitalizations. The information from the survey is used for statewide surveillance, planning, resource allocation, and emergency response activities. Hospitals began reporting for the HERDS COVID-19 survey in mid-March 2020.

To calculate regional totals, the number of patients hospitalized and number of patients in the ICU are each summed by hospital region and reporting date.

The information in this dataset is updated daily on NY Forward; New York State’s resource for COVID-19 testing, early warning monitoring, and regional daily hospitalization dashboards. More information can be found at forward.ny.gov.

As of March 6, 2021, there have been around 39.7 million tests for COVID-19 in the state of New York, leading to almost 1.7 million positive cases. New York has been one of the hardest hit U.S. states by the COVID-19 pandemic and accounts for a high amount of cases in the U.S. This statistic shows the cumulative number of COVID-19 tests, cases, hospitalizations, and deaths in New York as of March 6, 2021.

This dataset includes information at the reporting facility level on patients hospitalized, admitted, discharged and fatalities. It also includes information on staffed beds. Patient information collected as part of the HERDS Hospital Survey are lab-confirmed COVID-19 positive. Hospitalized means patients admitted as inpatients in either inpatient or observation beds and does not include patients that were treated and released from an Emergency Department. The title of this dataset was initially the Hospital Electronic Response Data System (HERDS) Hospital Survey: COVID-19 Hospitalizations and Beds. The dataset was changed to its current title on 11/4/2021.

In the state of New York, there have been 89,995 hospitalizations due to COVID-19 as of June 21, 2020. This statistic shows the cumulative number of hospitalizations due to COVID-19 in New York State from March 21 to June 21, 2020, by day.

This dataset tracks the updates made on the dataset "New York State Statewide COVID-19 Hospitalizations and Beds" as a repository for previous versions of the data and metadata.

This dataset tracks the updates made on the dataset "New York Forward COVID-19 Daily Hospitalization Summary by Region (Archived)" as a repository for previous versions of the data and metadata.

The dataset shows outcomes (confirmed cases, hospitalizations, and deaths) for cohorts defined by each date of specimen collection (specimen_date).

For example, if a NYC resident tested positive for SARS-CoV-2 and was subsequently hospitalized, both events would show under the same specimen_date, indicating the date of specimen collection for the positive test and not the date of the hospitalization.

For a comparable dataset showing diagnosis dates for confirmed cases, admission dates for hospitalized patients, and death dates for decedents, see https://data.cityofnewyork.us/Health/COVID-19-Daily-Counts-of-Cases-Hospitalizations-an/rc75-m7u3

This dashboard provides a snapshot of several key measurements of COVID-19's impact on New York City, including total cases, case growth, hospitalizations, deaths, and the distribution of positive COVID-19 tests across the City by ZIP Code.The dashboard features data maintained by the New York City Department of Health and Mental Hygiene (DOHMH) and published for public use at https://github.com/nychealth/coronavirus-data. Please consult the README file for data definitions and notes on proper use and interpretation.DOHMH updates data in this repository on a daily basis, but not all datasets are updated every day.

Background: In clinical trials, several SARS-CoV-2 vaccines were shown to reduce risk of severe COVID-19 illness. Local, population-level, real-world evidence of vaccine effectiveness is accumulating. We assessed vaccine effectiveness for community-dwelling New York City (NYC) residents using a quasi-experimental, regression discontinuity design, leveraging a period (January 12-March 9, 2021) when ≥ 65-year-olds were vaccine-eligible but younger persons, excluding essential workers, were not. Methods: We constructed segmented, negative binomial regression models of age-specific COVID-19 hospitalization rates among 45-84-year-old NYC residents during a post-vaccination program implementation period (February 21-April 17, 2021), with a discontinuity at age 65 years. The relationship between age and hospitalization rates in an unvaccinated population was incorporated using a pre-implementation period (December 20, 2020-February 13, 2021). We calculated the rate ratio (RR) and 95% confidence interval (CI) for the interaction between implementation period (pre or post) and age-based eligibility (45-64 or 65-84 years). Analyses were stratified by race/ethnicity and borough of residence. Similar analyses were conducted for COVID-19 deaths. Results: Hospitalization rates among 65-84-year-olds decreased from pre- to post-implementation periods (RR 0.85, 95% CI: 0.74-0.97), controlling for trends among 45-64-year-olds. Accordingly, an estimated 721 (95% CI: 126-1,241) hospitalizations were averted. Residents just above the eligibility threshold (65-66-year-olds) had lower hospitalization rates than those below (63-64-year-olds). Racial/ethnic groups and boroughs with higher vaccine coverage generally experienced greater reductions in RR point estimates. Uncertainty was greater for the decrease in COVID-19 death rates (RR 0.85, 95% CI: 0.66-1.10). Conclusion: The vaccination program in NYC reduced COVID-19 hospitalizations among the initially age-eligible ≥ 65-year-old population by approximately 15% in the first eight weeks. The real-world evidence of vaccine effectiveness makes it more imperative to improve vaccine access and uptake to reduce inequities in COVID-19 outcomes.

This dataset shows the COVID-19 outcomes by testing cohorts. It shows the cases, hospitalizations and Deaths in the NYC (New York City). The data is provided by the Department of Health and Mental Hygiene (DOHMH).

This dataset shows the number of hospital admissions for influenza-like illness, pneumonia, or include ICD-10-CM code (U07.1) for 2019 novel coronavirus. Influenza-like illness is defined as a mention of either: fever and cough, fever and sore throat, fever and shortness of breath or difficulty breathing, or influenza. Patients whose ICD-10-CM code was subsequently assigned with only an ICD-10-CM code for influenza are excluded. Pneumonia is defined as mention or diagnosis of pneumonia. Baseline data represents the average number of people with COVID-19-like illness who are admitted to the hospital during this time of year based on historical counts. The average is based on the daily avg from the rolling same week (same day +/- 3 days) from the prior 3 years. Percent change data represents the change in count of people admitted compared to the previous day. Data sources include all hospital admissions from emergency department visits in NYC. Data are collected electronically and transmitted to the NYC Health Department hourly. This dataset is updated daily. All identifying health information is excluded from the dataset.

Updates

• Notice of data discontinuation: Since the start of the pandemic, AP has reported case and death counts from data provided by Johns Hopkins University. Johns Hopkins University has announced that they will stop their daily data collection efforts after March 10. As Johns Hopkins stops providing data, the AP will also stop collecting daily numbers for COVID cases and deaths. The HHS and CDC now collect and visualize key metrics for the pandemic. AP advises using those resources when reporting on the pandemic going forward.

  • CDC Weekly case and death counts (national and state level)
  • CDC County level cases and deaths
  • HHS New hospital admissions
  • CDC NowCast COVID variant proportions (national and regional level)

• April 9, 2020

  • The population estimate data for New York County, NY has been updated to include all five New York City counties (Kings County, Queens County, Bronx County, Richmond County and New York County). This has been done to match the Johns Hopkins COVID-19 data, which aggregates counts for the five New York City counties to New York County.

• April 20, 2020

  • Johns Hopkins death totals in the US now include confirmed and probable deaths in accordance with CDC guidelines as of April 14. One significant result of this change was an increase of more than 3,700 deaths in the New York City count. This change will likely result in increases for death counts elsewhere as well. The AP does not alter the Johns Hopkins source data, so probable deaths are included in this dataset as well.

• April 29, 2020

  • The AP is now providing timeseries data for counts of COVID-19 cases and deaths. The raw counts are provided here unaltered, along with a population column with Census ACS-5 estimates and calculated daily case and death rates per 100,000 people. Please read the updated caveats section for more information.

• September 1st, 2020

  • Johns Hopkins is now providing counts for the five New York City counties individually.

• February 12, 2021

  • The Ohio Department of Health recently announced that as many as 4,000 COVID-19 deaths may have been underreported through the state’s reporting system, and that the "daily reported death counts will be high for a two to three-day period."
  • Because deaths data will be anomalous for consecutive days, we have chosen to freeze Ohio's rolling average for daily deaths at the last valid measure until Johns Hopkins is able to back-distribute the data. The raw daily death counts, as reported by Johns Hopkins and including the backlogged death data, will still be present in the new_deaths column.

• February 16, 2021

  - Johns Hopkins has reconciled Ohio's historical deaths data with the state.

  Overview

The AP is using data collected by the Johns Hopkins University Center for Systems Science and Engineering as our source for outbreak caseloads and death counts for the United States and globally.

The Hopkins data is available at the county level in the United States. The AP has paired this data with population figures and county rural/urban designations, and has calculated caseload and death rates per 100,000 people. Be aware that caseloads may reflect the availability of tests -- and the ability to turn around test results quickly -- rather than actual disease spread or true infection rates.

This data is from the Hopkins dashboard that is updated regularly throughout the day. Like all organizations dealing with data, Hopkins is constantly refining and cleaning up their feed, so there may be brief moments where data does not appear correctly. At this link, you’ll find the Hopkins daily data reports, and a clean version of their feed.

The AP is updating this dataset hourly at 45 minutes past the hour.

To learn more about AP's data journalism capabilities for publishers, corporations and financial institutions, go here or email kromano@ap.org.

Queries

Use AP's queries to filter the data or to join to other datasets we've made available to help cover the coronavirus pandemic

• Filter cases by state here

• Rank states by their status as current hotspots. Calculates the 7-day rolling average of new cases per capita in each state: https://data.world/associatedpress/johns-hopkins-coronavirus-case-tracker/workspace/query?queryid=481e82a4-1b2f-41c2-9ea1-d91aa4b3b1ac

• Find recent hotspots within your state by running a query to calculate the 7-day rolling average of new cases by capita in each county: https://data.world/associatedpress/johns-hopkins-coronavirus-case-tracker/workspace/query?queryid=b566f1db-3231-40fe-8099-311909b7b687&showTemplatePreview=true

• Join county-level case data to an earlier dataset released by AP on local hospital capacity here. To find out more about the hospital capacity dataset, see the full details.

• Pull the 100 counties with the highest per-capita confirmed cases here

• Rank all the counties by the highest per-capita rate of new cases in the past 7 days here. Be aware that because this ranks per-capita caseloads, very small counties may rise to the very top, so take into account raw caseload figures as well.

Interactive

The AP has designed an interactive map to track COVID-19 cases reported by Johns Hopkins.

@(https://datawrapper.dwcdn.net/nRyaf/15/)

Interactive Embed Code

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Caveats

• This data represents the number of cases and deaths reported by each state and has been collected by Johns Hopkins from a number of sources cited on their website.
• In some cases, deaths or cases of people who've crossed state lines -- either to receive treatment or because they became sick and couldn't return home while traveling -- are reported in a state they aren't currently in, because of state reporting rules.
• In some states, there are a number of cases not assigned to a specific county -- for those cases, the county name is "unassigned to a single county"
• This data should be credited to Johns Hopkins University's COVID-19 tracking project. The AP is simply making it available here for ease of use for reporters and members.
• Caseloads may reflect the availability of tests -- and the ability to turn around test results quickly -- rather than actual disease spread or true infection rates.
• Population estimates at the county level are drawn from 2014-18 5-year estimates from the American Community Survey.
• The Urban/Rural classification scheme is from the Center for Disease Control and Preventions's National Center for Health Statistics. It puts each county into one of six categories -- from Large Central Metro to Non-Core -- according to population and other characteristics. More details about the classifications can be found here.

Johns Hopkins timeseries data - Johns Hopkins pulls data regularly to update their dashboard. Once a day, around 8pm EDT, Johns Hopkins adds the counts for all areas they cover to the timeseries file. These counts are snapshots of the latest cumulative counts provided by the source on that day. This can lead to inconsistencies if a source updates their historical data for accuracy, either increasing or decreasing the latest cumulative count. - Johns Hopkins periodically edits their historical timeseries data for accuracy. They provide a file documenting all errors in their timeseries files that they have identified and fixed here

Attribution

This data should be credited to Johns Hopkins University COVID-19 tracking project

Note: Data elements were retired from HERDS on 10/6/23 and this dataset was archived.

This dataset includes weekly information about race/ethnicity categories and age groups of patients admitted for inpatient care to the hospital that are lab-confirmed COVID-19 positive.

An age-stratified agent-based model of COVID-19 was used to simulate outbreaks in states within two U. S. regions. The northeastern region consisted of Connecticut, Massachusetts, Maine, New Hampshire, New Jersey, New York, Pennsylvania, Rhode Island and Vermont. The southern region consisted of Alabama, Arkansas, Delaware, District of Columbia, Florida, Georgia, Kentucky, Louisiana, Maryland, Mississippi, North Carolina, Oklahoma, South Carolina, Tennessee, Texas, Virginia and West Virginia. The model was calibrated using reported incidence of COVID-19 in each state from October 1, 2020 to August 31, 2021. It then projected the number of infections, hospitalizations, and deaths that would be averted between September 2021 and the end of March 2022, if states increased their daily vaccination rate.

IntroductionOur study explores how New York City (NYC) communities of various socioeconomic strata were uniquely impacted by the COVID-19 pandemic.MethodsNew York City ZIP codes were stratified into three bins by median income: high-income, middle-income, and low-income. Case, hospitalization, and death rates obtained from NYCHealth were compared for the period between March 2020 and April 2022.ResultsCOVID-19 transmission rates among high-income populations during off-peak waves were higher than transmission rates among low-income populations. Hospitalization rates among low-income populations were higher during off-peak waves despite a lower transmission rate. Death rates during both off-peak and peak waves were higher for low-income ZIP codes.DiscussionThis study presents evidence that while high-income areas had higher transmission rates during off-peak periods, low-income areas suffered greater adverse outcomes in terms of hospitalization and death rates. The importance of this study is that it focuses on the social inequalities that were amplified by the pandemic.

Several observational studies from locations around the globe have documented a positive correlation between air pollution and the severity of COVID-19 disease. Observational studies cannot identify the causal link between air quality and the severity of COVID-19 outcomes, and these studies face three key identification challenges: 1) air pollution is not randomly distributed across geographies; 2) air-quality monitoring networks are sparse spatially; and 3) defensive behaviors to mediate exposure to air pollution and COVID-19 are not equally available to all, leading to large measurement error bias when using rate-based COVID-19 outcome measures (e.g., incidence rate or mortality rate). Using a quasi-experimental design, we explore whether traffic-related air pollutants cause people with COVID-19 to suffer more extreme health outcomes in New York City (NYC). When we address the previously overlooked challenges to identification, we do not detect causal impacts of increased chronic concentrations of traffic-related air pollutants on COVID-19 death or hospitalization counts in NYC census tracts.

Characteristics and outcomes of hospitalized patients.

This dataset includes information at the report date level on patients admitted for inpatient care to the hospital that are lab-confirmed COVID-19 positive. Admitted means that the patient was newly admitted to the hospital or was confirmed positive after admission. Zip Code information became available for COVID-19 admissions as of May 2, 2020. Hospitalized means patients admitted as inpatients in either inpatient or observation beds and does not include patients that were treated and released from an Emergency Department. The title of this dataset was initially the Hospital Electronic Response Data System (HERDS) Hospital Survey: COVID-19 Admissions by Zip Code. The dataset was changed to its current title on 11/4/2021.