The complete dataset used in the analysis comprises 36 samples, each described by 11 numeric features and 1 target. The attributes considered were caspase 3/7 activity, Mitotracker red CMXRos area and intensity (3 h and 24 h incubations with both compounds), Mitosox oxidation (3 h incubation with the referred compounds) and oxidation rate, DCFDA fluorescence (3 h and 24 h incubations with either compound) and oxidation rate, and DQ BSA hydrolysis. The target of each instance corresponds to one of the 9 possible classes (4 samples per class): Control, 6.25, 12.5, 25 and 50 µM for 6-OHDA and 0.03, 0.06, 0.125 and 0.25 µM for rotenone. The dataset is balanced, it does not contain any missing values and data was standardized across features. The small number of samples prevented a full and strong statistical analysis of the results. Nevertheless, it allowed the identification of relevant hidden patterns and trends.

Exploratory data analysis, information gain, hierarchical clustering, and supervised predictive modeling were performed using Orange Data Mining version 3.25.1 [41]. Hierarchical clustering was performed using the Euclidean distance metric and weighted linkage. Cluster maps were plotted to relate the features with higher mutual information (in rows) with instances (in columns), with the color of each cell representing the normalized level of a particular feature in a specific instance. The information is grouped both in rows and in columns by a two-way hierarchical clustering method using the Euclidean distances and average linkage. Stratified cross-validation was used to train the supervised decision tree. A set of preliminary empirical experiments were performed to choose the best parameters for each algorithm, and we verified that, within moderate variations, there were no significant changes in the outcome. The following settings were adopted for the decision tree algorithm: minimum number of samples in leaves: 2; minimum number of samples required to split an internal node: 5; stop splitting when majority reaches: 95%; criterion: gain ratio. The performance of the supervised model was assessed using accuracy, precision, recall, F-measure and area under the ROC curve (AUC) metrics.

Replication Package for A Study on the Pythonic Functional Constructs' Understandability

This package contains several folders and files with code and data used in the study.

examples/
Contains the code snippets used as objects of the study, named as reported in Table 1, summarizing the experiment design.

RQ1-RQ2-files-for-statistical-analysis/
Contains three .csv files used as input for conducting the statistical analysis and drawing the graphs for addressing the first two research questions of the study. Specifically:

- ConstructUsage.csv contains the declared frequency usage of the three functional constructs object of the study. This file is used to draw Figure 4.
- RQ1.csv contains the collected data used for the mixed-effect logistic regression relating the use of functional constructs with the correctness of the change task, and the logistic regression relating the use of map/reduce/filter functions with the correctness of the change task.
- RQ1Paired-RQ2.csv contains the collected data used for the ordinal logistic regression of the relationship between the perceived ease of understanding of the functional constructs and (i) participants' usage frequency, and (ii) constructs' complexity (except for map/reduce/filter).

inter-rater-RQ3-files/
Contains four .csv files used as input for computing the inter-rater agreement for the manual labeling used for addressing RQ3. Specifically, you will find one file for each functional construct, i.e., comprehension.csv, lambda.csv, and mrf.csv, and a different file used for highlighting the reasons why participants prefer to use the procedural paradigm, i.e., procedural.csv.

Questionnaire-Example.pdf
This file contains the questionnaire submitted to one of the ten experimental groups within our controlled experiment. Other questionnaires are similar, except for the code snippets used for the first section, i.e., change tasks, and the second section, i.e., comparison tasks.

RQ2ManualValidation.csv
This file contains the results of the manual validation being done to sanitize the answers provided by our participants used for addressing RQ2. Specifically, we coded the behavior description using four different levels: (i) correct, (ii) somewhat correct, (iii) wrong, and (iv) automatically generated.

RQ3ManualValidation.xlsx
This file contains the results of the open coding applied to address our third research question. Specifically, you will find four sheets, one for each functional construct and one for the procedural paradigm. For each sheet, you will find the provided answers together with the categories assigned to them.

Appendix.pdf
This file contains the results of the logistic regression relating the use of map, filter, and reduce functions with the correctness of the change task, not shown in the paper.

FuncConstructs-Statistics.r
This file contains an R script that you can reuse to re-run all the analyses conducted and discussed in the paper.

FuncConstructs-Statistics.ipynb
This file contains the code to re-execute all the analysis conducted in the paper as a notebook.

Sample data set used in an introductory course on Programming in Python

Scientific and related management challenges in the water domain require synthesis of data from multiple domains. Many data analysis tasks are difficult because datasets are large and complex; standard formats for data types are not always agreed upon nor mapped to an efficient structure for analysis; water scientists may lack training in methods needed to efficiently tackle large and complex datasets; and available tools can make it difficult to share, collaborate around, and reproduce scientific work. Overcoming these barriers to accessing, organizing, and preparing datasets for analyses will be an enabler for transforming scientific inquiries. Building on the HydroShare repository’s established cyberinfrastructure, we have advanced two packages for the Python language that make data loading, organization, and curation for analysis easier, reducing time spent in choosing appropriate data structures and writing code to ingest data. These packages enable automated retrieval of data from HydroShare and the USGS’s National Water Information System (NWIS), loading of data into performant structures keyed to specific scientific data types and that integrate with existing visualization, analysis, and data science capabilities available in Python, and then writing analysis results back to HydroShare for sharing and eventual publication. These capabilities reduce the technical burden for scientists associated with creating a computational environment for executing analyses by installing and maintaining the packages within CUAHSI’s HydroShare-linked JupyterHub server. HydroShare users can leverage these tools to build, share, and publish more reproducible scientific workflows. The HydroShare Python Client and USGS NWIS Data Retrieval packages can be installed within a Python environment on any computer running Microsoft Windows, Apple MacOS, or Linux from the Python Package Index using the PIP utility. They can also be used online via the CUAHSI JupyterHub server (https://jupyterhub.cuahsi.org/) or other Python notebook environments like Google Collaboratory (https://colab.research.google.com/). Source code, documentation, and examples for the software are freely available in GitHub at https://github.com/hydroshare/hsclient/ and https://github.com/USGS-python/dataretrieval.

This presentation was delivered as part of the Hawai'i Data Science Institute's regular seminar series: https://datascience.hawaii.edu/event/data-science-and-analytics-for-water/

The global big data and business analytics (BDA) market was valued at 168.8 billion U.S. dollars in 2018 and is forecast to grow to 215.7 billion U.S. dollars by 2021. In 2021, more than half of BDA spending will go towards services. IT services is projected to make up around 85 billion U.S. dollars, and business services will account for the remainder. Big data High volume, high velocity and high variety: one or more of these characteristics is used to define big data, the kind of data sets that are too large or too complex for traditional data processing applications. Fast-growing mobile data traffic, cloud computing traffic, as well as the rapid development of technologies such as artificial intelligence (AI) and the Internet of Things (IoT) all contribute to the increasing volume and complexity of data sets. For example, connected IoT devices are projected to generate 79.4 ZBs of data in 2025. Business analytics Advanced analytics tools, such as predictive analytics and data mining, help to extract value from the data and generate business insights. The size of the business intelligence and analytics software application market is forecast to reach around 16.5 billion U.S. dollars in 2022. Growth in this market is driven by a focus on digital transformation, a demand for data visualization dashboards, and an increased adoption of cloud.

Example data sets and computer code for the book chapter titled "Missing Data in the Analysis of Multilevel and Dependent Data" submitted for publication in the second edition of "Dependent Data in Social Science Research" (Stemmler et al., 2015). This repository includes the computer code (".R") and the data sets from both example analyses (Examples 1 and 2). The data sets are available in two file formats (binary ".rda" for use in R; plain-text ".dat").

The data sets contain simulated data from 23,376 (Example 1) and 23,072 (Example 2) individuals from 2,000 groups on four variables:

ID = group identifier (1-2000) x = numeric (Level 1) y = numeric (Level 1) w = binary (Level 2)

In all data sets, missing values are coded as "NA".

Transparency in data visualization is an essential ingredient for scientific communication. The traditional approach of visualizing continuous quantitative data solely in the form of summary statistics (i.e., measures of central tendency and dispersion) has repeatedly been criticized for not revealing the underlying raw data distribution. Remarkably, however, systematic and easy-to-use solutions for raw data visualization using the most commonly reported statistical software package for data analysis, IBM SPSS Statistics, are missing. Here, a comprehensive collection of more than 100 SPSS syntax files and an SPSS dataset template is presented and made freely available that allow the creation of transparent graphs for one-sample designs, for one- and two-factorial between-subject designs, for selected one- and two-factorial within-subject designs as well as for selected two-factorial mixed designs and, with some creativity, even beyond (e.g., three-factorial mixed-designs). Depending on graph type (e.g., pure dot plot, box plot, and line plot), raw data can be displayed along with standard measures of central tendency (arithmetic mean and median) and dispersion (95% CI and SD). The free-to-use syntax can also be modified to match with individual needs. A variety of example applications of syntax are illustrated in a tutorial-like fashion along with fictitious datasets accompanying this contribution. The syntax collection is hoped to provide researchers, students, teachers, and others working with SPSS a valuable tool to move towards more transparency in data visualization.

This lesson was adapted from educational material written by Dr. Kateri Salk for her Fall 2019 Hydrologic Data Analysis course at Duke University. This is the first part of a two-part exercise focusing on time series analysis.

Introduction

Time series are a special class of dataset, where a response variable is tracked over time. The frequency of measurement and the timespan of the dataset can vary widely. At its most simple, a time series model includes an explanatory time component and a response variable. Mixed models can include additional explanatory variables (check out the nlme and lme4 R packages). We will be covering a few simple applications of time series analysis in these lessons.

Opportunities

Analysis of time series presents several opportunities. In aquatic sciences, some of the most common questions we can answer with time series modeling are:

• Has there been an increasing or decreasing trend in the response variable over time?

• Can we forecast conditions in the future?

  Challenges

Time series datasets come with several caveats, which need to be addressed in order to effectively model the system. A few common challenges that arise (and can occur together within a single dataset) are:

• Autocorrelation: Data points are not independent from one another (i.e., the measurement at a given time point is dependent on previous time point(s)).

• Data gaps: Data are not collected at regular intervals, necessitating interpolation between measurements. There are often gaps between monitoring periods. For many time series analyses, we need equally spaced points.

• Seasonality: Cyclic patterns in variables occur at regular intervals, impeding clear interpretation of a monotonic (unidirectional) trend. Ex. We can assume that summer temperatures are higher.

• Heteroscedasticity: The variance of the time series is not constant over time.

• Covariance: the covariance of the time series is not constant over time. Many of these models assume that the variance and covariance are similar over the time-->heteroschedasticity.

  Learning Objectives

After successfully completing this notebook, you will be able to:

1. Choose appropriate time series analyses for trend detection and forecasting

2. Discuss the influence of seasonality on time series analysis

3. Interpret and communicate results of time series analyses

These four labeled data sets are targeted at ordinal quantification. The goal of quantification is not to predict the label of each individual instance, but the distribution of labels in unlabeled sets of data.

With the scripts provided, you can extract CSV files from the UCI machine learning repository and from OpenML. The ordinal class labels stem from a binning of a continuous regression label.

We complement this data set with the indices of data items that appear in each sample of our evaluation. Hence, you can precisely replicate our samples by drawing the specified data items. The indices stem from two evaluation protocols that are well suited for ordinal quantification. To this end, each row in the files app_val_indices.csv, app_tst_indices.csv, app-oq_val_indices.csv, and app-oq_tst_indices.csv represents one sample.

Our first protocol is the artificial prevalence protocol (APP), where all possible distributions of labels are drawn with an equal probability. The second protocol, APP-OQ, is a variant thereof, where only the smoothest 20% of all APP samples are considered. This variant is targeted at ordinal quantification tasks, where classes are ordered and a similarity of neighboring classes can be assumed.

Usage

You can extract four CSV files through the provided script extract-oq.jl, which is conveniently wrapped in a Makefile. The Project.toml and Manifest.toml specify the Julia package dependencies, similar to a requirements file in Python.

Preliminaries: You have to have a working Julia installation. We have used Julia v1.6.5 in our experiments.

Data Extraction: In your terminal, you can call either

make

(recommended), or

julia --project="." --eval "using Pkg; Pkg.instantiate()"
julia --project="." extract-oq.jl

Outcome: The first row in each CSV file is the header. The first column, named "class_label", is the ordinal class.

Further Reading

Implementation of our experiments: https://github.com/mirkobunse/regularized-oq

Big Data Analytics for Clinical Research Market Outlook

As per our latest research, the Big Data Analytics for Clinical Research market size reached USD 7.45 billion globally in 2024, reflecting a robust adoption pace driven by the increasing digitization of healthcare and clinical trial processes. The market is forecasted to grow at a CAGR of 17.2% from 2025 to 2033, reaching an estimated USD 25.54 billion by 2033. This significant growth is primarily attributed to the rising need for real-time data-driven decision-making, the proliferation of electronic health records (EHRs), and the growing emphasis on precision medicine and personalized healthcare solutions. The industry is experiencing rapid technological advancements, making big data analytics a cornerstone in transforming clinical research methodologies and outcomes.

Several key growth factors are propelling the expansion of the Big Data Analytics for Clinical Research market. One of the primary drivers is the exponential increase in clinical data volumes from diverse sources, including EHRs, wearable devices, genomics, and imaging. Healthcare providers and research organizations are leveraging big data analytics to extract actionable insights from these massive datasets, accelerating drug discovery, optimizing clinical trial design, and improving patient outcomes. The integration of artificial intelligence (AI) and machine learning (ML) algorithms with big data platforms has further enhanced the ability to identify patterns, predict patient responses, and streamline the entire research process. These technological advancements are reducing the time and cost associated with clinical research, making it more efficient and effective.

Another significant factor fueling market growth is the increasing collaboration between pharmaceutical & biotechnology companies and technology firms. These partnerships are fostering the development of advanced analytics solutions tailored specifically for clinical research applications. The demand for real-world evidence (RWE) and real-time patient monitoring is rising, particularly in the context of post-market surveillance and regulatory compliance. Big data analytics is enabling stakeholders to gain deeper insights into patient populations, treatment efficacy, and adverse event patterns, thereby supporting evidence-based decision-making. Furthermore, the shift towards decentralized and virtual clinical trials is creating new opportunities for leveraging big data to monitor patient engagement, adherence, and safety remotely.

The regulatory landscape is also evolving to accommodate the growing use of big data analytics in clinical research. Regulatory agencies such as the FDA and EMA are increasingly recognizing the value of data-driven approaches for enhancing the reliability and transparency of clinical trials. This has led to the establishment of guidelines and frameworks that encourage the adoption of big data technologies while ensuring data privacy and security. However, the implementation of stringent data protection regulations, such as GDPR and HIPAA, poses challenges related to data integration, interoperability, and compliance. Despite these challenges, the overall outlook for the Big Data Analytics for Clinical Research market remains highly positive, with sustained investments in digital health infrastructure and analytics capabilities.

From a regional perspective, North America currently dominates the Big Data Analytics for Clinical Research market, accounting for the largest share due to its advanced healthcare infrastructure, high adoption of digital technologies, and strong presence of leading pharmaceutical companies. Europe follows closely, driven by increasing government initiatives to promote health data interoperability and research collaborations. The Asia Pacific region is emerging as a high-growth market, supported by expanding healthcare IT investments, rising clinical trial activities, and growing awareness of data-driven healthcare solutions. Latin America and the Middle East & Africa are also witnessing gradual adoption, albeit at a slower pace, due to infrastructural and regulatory challenges. Overall, the global market is poised for substantial growth across all major regions over the forecast period.

The U.S. Geological Survey New England Water Science Center, under an interagency agreement with the Federal Emergency Management Agency, conducted frequency analyses of stillwater elevations at three National Oceanic and Atmospheric Administration coastal gages following the coastal floods of 2018. The datasets are comma-delimited files of period-of-record annual peak stillwater elevations collected at gages in Boston, Massachusetts, Portland, Maine, and Seavey Island, Maine, for analysis of annual-exceedence probabilities. The peak water-surface elevations are in feet in the North American Vertical Datum of 1988.

Objective: The objective of this review is to identify what is known about Indigenous data analysis methods for research. Introduction: Understanding Indigenous data analyses methods for research is crucial in health research with Indigenous participants, to support culturally appropriate interpretation of research data, and culturally inclusive analyses in cross-cultural research teams. Inclusion Criteria: This review will consider primary research studies that report on Indigenous data analysis methods for research. Method: Medline (via Ovid SP), PsycINFO (via Ovid SP), Web of Science (Clarivate Analytics), Scopus (Elsevier), Cumulated Index to Nursing and Allied Health Literature CINAHL (EBSCOhost), ProQuest Central, ProQuest Social Sciences Premium (Clarivate) will be searched. ProQuest (Theses and Dissertations) will be searched for unpublished material. Studies published from inception onwards and written in English will be assessed for inclusion. Studies meeting the inclusion criteria will be assessed for methodological quality and data will be extracted.

This article discusses how to make statistical graphics a more prominent element of the undergraduate statistics curricula. The focus is on several different types of assignments that exemplify how to incorporate graphics into a course in a pedagogically meaningful way. These assignments include having students deconstruct and reconstruct plots, copy masterful graphs, create one-minute visual revelations, convert tables into “pictures,” and develop interactive visualizations, for example, with the virtual earth as a plotting canvas. In addition to describing the goals and details of each assignment, we also discuss the broader topic of graphics and key concepts that we think warrant inclusion in the statistics curricula. We advocate that more attention needs to be paid to this fundamental field of statistics at all levels, from introductory undergraduate through graduate level courses. With the rapid rise of tools to visualize data, for example, Google trends, GapMinder, ManyEyes, and Tableau, and the increased use of graphics in the media, understanding the principles of good statistical graphics, and having the ability to create informative visualizations is an ever more important aspect of statistics education. Supplementary materials containing code and data for the assignments are available online.

This publication provides all the information required to understand the PISA 2003 educational performance database and perform analyses in accordance with the complex methodologies used to collect and process the data. It enables researchers to both reproduce the initial results and to undertake further analyses. The publication includes introductory chapters explaining the statistical theories and concepts required to analyse the PISA data, including full chapters on how to apply replicate weights and undertake analyses using plausible values; worked examples providing full syntax in SAS®; and a comprehensive description of the OECD PISA 2003 international database. The PISA 2003 database includes micro-level data on student educational performance for 41 countries collected in 2003, together with students’ responses to the PISA 2003 questionnaires and the test questions. A similar manual is available for SPSS users.

This repository contains material related to the analysis performed in the article "Best Practices for Your Exploratory Factor Analysis: Factor Tutorial". The material includes the data used in the analyses in .dat format, the labels (.txt) of the variables used in the Factor software, the outputs (.txt) evaluated in the article, and videos (.mp4 with English subtitles) recorded for the purpose of explaining the article. The videos can also be accessed in the following playlist: https://youtube.com/playlist?list=PLDfyRtHbxiZ3R-T3H1cY8dusz273aUFVe. Below is a summary of the article:

"Exploratory Factor Analysis (EFA) is one of the statistical methods most widely used in Administration, however, its current practice coexists with rules of thumb and heuristics given half a century ago. The purpose of this article is to present the best practices and recent recommendations for a typical EFA in Administration through a practical solution accessible to researchers. In this sense, in addition to discussing current practices versus recommended practices, a tutorial with real data on Factor is illustrated, a software that is still little known in the Administration area, but freeware, easy to use (point and click) and powerful. The step-by-step illustrated in the article, in addition to the discussions raised and an additional example, is also available in the format of tutorial videos. Through the proposed didactic methodology (article-tutorial + video-tutorial), we encourage researchers/methodologists who have mastered a particular technique to do the same. Specifically, about EFA, we hope that the presentation of the Factor software, as a first solution, can transcend the current outdated rules of thumb and heuristics, by making best practices accessible to Administration researchers"

In this project, we aim to analyze and gain insights into the performance of students based on various factors that influence their academic achievements. We have collected data related to students' demographic information, family background, and their exam scores in different subjects.

**********Key Objectives:*********

1. Performance Evaluation: Evaluate and understand the academic performance of students by analyzing their scores in various subjects.

2. Identifying Underlying Factors: Investigate factors that might contribute to variations in student performance, such as parental education, family size, and student attendance.

3. Visualizing Insights: Create data visualizations to present the findings effectively and intuitively.

Dataset Details:

• The dataset used in this analysis contains information about students, including their age, gender, parental education, lunch type, and test scores in subjects like mathematics, reading, and writing.

Analysis Highlights:

• We will perform a comprehensive analysis of the dataset, including data cleaning, exploration, and visualization to gain insights into various aspects of student performance.

• By employing statistical methods and machine learning techniques, we will determine the significant factors that affect student performance.

Why This Matters:

Understanding the factors that influence student performance is crucial for educators, policymakers, and parents. This analysis can help in making informed decisions to improve educational outcomes and provide support where it is most needed.

Acknowledgments:

We would like to express our gratitude to [mention any data sources or collaborators] for making this dataset available.

Please Note:

This project is meant for educational and analytical purposes. The dataset used is fictitious and does not represent any specific educational institution or individuals.

analyze the health and retirement study (hrs) with r the hrs is the one and only longitudinal survey of american seniors. with a panel starting its third decade, the current pool of respondents includes older folks who have been interviewed every two years as far back as 1992. unlike cross-sectional or shorter panel surveys, respondents keep responding until, well, death d o us part. paid for by the national institute on aging and administered by the university of michigan's institute for social research, if you apply for an interviewer job with them, i hope you like werther's original. figuring out how to analyze this data set might trigger your fight-or-flight synapses if you just start clicking arou nd on michigan's website. instead, read pages numbered 10-17 (pdf pages 12-19) of this introduction pdf and don't touch the data until you understand figure a-3 on that last page. if you start enjoying yourself, here's the whole book. after that, it's time to register for access to the (free) data. keep your username and password handy, you'll need it for the top of the download automation r script. next, look at this data flowchart to get an idea of why the data download page is such a righteous jungle. but wait, good news: umich recently farmed out its data management to the rand corporation, who promptly constructed a giant consolidated file with one record per respondent across the whole panel. oh so beautiful. the rand hrs files make much of the older data and syntax examples obsolete, so when you come across stuff like instructions on how to merge years, you can happily ignore them - rand has done it for you. the health and retirement study only includes noninstitutionalized adults when new respondents get added to the panel (as they were in 1992, 1993, 1998, 2004, and 2010) but once they're in, they're in - respondents have a weight of zero for interview waves when they were nursing home residents; but they're still responding and will continue to contribute to your statistics so long as you're generalizing about a population from a previous wave (for example: it's possible to compute "among all americans who were 50+ years old in 1998, x% lived in nursing homes by 2010"). my source for that 411? page 13 of the design doc. wicked. this new github repository contains five scripts: 1992 - 2010 download HRS microdata.R loop through every year and every file, download, then unzip everything in one big party impor t longitudinal RAND contributed files.R create a SQLite database (.db) on the local disk load the rand, rand-cams, and both rand-family files into the database (.db) in chunks (to prevent overloading ram) longitudinal RAND - analysis examples.R connect to the sql database created by the 'import longitudinal RAND contributed files' program create tw o database-backed complex sample survey object, using a taylor-series linearization design perform a mountain of analysis examples with wave weights from two different points in the panel import example HRS file.R load a fixed-width file using only the sas importation script directly into ram with < a href="http://blog.revolutionanalytics.com/2012/07/importing-public-data-with-sas-instructions-into-r.html">SAScii parse through the IF block at the bottom of the sas importation script, blank out a number of variables save the file as an R data file (.rda) for fast loading later replicate 2002 regression.R connect to the sql database created by the 'import longitudinal RAND contributed files' program create a database-backed complex sample survey object, using a taylor-series linearization design exactly match the final regression shown in this document provided by analysts at RAND as an update of the regression on pdf page B76 of this document . click here to view these five scripts for more detail about the health and retirement study (hrs), visit: michigan's hrs homepage rand's hrs homepage the hrs wikipedia page a running list of publications using hrs notes: exemplary work making it this far. as a reward, here's the detailed codebook for the main rand hrs file. note that rand also creates 'flat files' for every survey wave, but really, most every analysis you c an think of is possible using just the four files imported with the rand importation script above. if you must work with the non-rand files, there's an example of how to import a single hrs (umich-created) file, but if you wish to import more than one, you'll have to write some for loops yourself. confidential to sas, spss, stata, and sudaan users: a tidal wave is coming. you can get water up your nose and be dragged out to sea, or you can grab a surf board. time to transition to r. :D

Code is compatible with Matlab v2020. The corresponding open-source alternative is Octave (https://octave.org/).

Database of the nation''s substance abuse and mental health research data providing public use data files, file documentation, and access to restricted-use data files to support a better understanding of this critical area of public health. The goal is to increase the use of the data to most accurately understand and assess substance abuse and mental health problems and the impact of related treatment systems. The data include the U.S. general and special populations, annual series, and designs that produce nationally representative estimates. Some of the data acquired and archived have never before been publicly distributed. Each collection includes survey instruments (when provided), a bibliography of related literature, and related Web site links. All data may be downloaded free of charge in SPSS, SAS, STATA, and ASCII formats and most studies are available for use with the online data analysis system. This system allows users to conduct analyses ranging from cross-tabulation to regression without downloading data or relying on other software. Another feature, Quick Tables, provides the ability to select variables from drop down menus to produce cross-tabulations and graphs that may be customized and cut and pasted into documents. Documentation files, such as codebooks and questionnaires, can be downloaded and viewed online.

Datasets and metadata used for the full streamline analysis of plant data under different conditions of infection. The tutorial is an example of analysis which can be useful in multiple scenario where comparisons are needed (healthy and sick patients, for example). You can find the tutorial at our website https://hds-sandbox.github.io/AdvancedSingleCell

Usage notes:

all files are ready to use, except for control1.tar.gz which is a folder that needs to be decompressed