100+ datasets found
  1. f

    A Model-Based Joint Identification of Differentially Expressed Genes and...

    • plos.figshare.com
    pptx
    Updated May 31, 2023
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    Samuel Sunghwan Cho; Yongkang Kim; Joon Yoon; Minseok Seo; Su-kyung Shin; Eun-Young Kwon; Sung-Eun Kim; Yun-Jung Bae; Seungyeoun Lee; Mi-Kyung Sung; Myung-Sook Choi; Taesung Park (2023). A Model-Based Joint Identification of Differentially Expressed Genes and Phenotype-Associated Genes [Dataset]. http://doi.org/10.1371/journal.pone.0149086
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    pptxAvailable download formats
    Dataset updated
    May 31, 2023
    Dataset provided by
    PLOS ONE
    Authors
    Samuel Sunghwan Cho; Yongkang Kim; Joon Yoon; Minseok Seo; Su-kyung Shin; Eun-Young Kwon; Sung-Eun Kim; Yun-Jung Bae; Seungyeoun Lee; Mi-Kyung Sung; Myung-Sook Choi; Taesung Park
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Over the last decade, many analytical methods and tools have been developed for microarray data. The detection of differentially expressed genes (DEGs) among different treatment groups is often a primary purpose of microarray data analysis. In addition, association studies investigating the relationship between genes and a phenotype of interest such as survival time are also popular in microarray data analysis. Phenotype association analysis provides a list of phenotype-associated genes (PAGs). However, it is sometimes necessary to identify genes that are both DEGs and PAGs. We consider the joint identification of DEGs and PAGs in microarray data analyses. The first approach we used was a naïve approach that detects DEGs and PAGs separately and then identifies the genes in an intersection of the list of PAGs and DEGs. The second approach we considered was a hierarchical approach that detects DEGs first and then chooses PAGs from among the DEGs or vice versa. In this study, we propose a new model-based approach for the joint identification of DEGs and PAGs. Unlike the previous two-step approaches, the proposed method identifies genes simultaneously that are DEGs and PAGs. This method uses standard regression models but adopts different null hypothesis from ordinary regression models, which allows us to perform joint identification in one-step. The proposed model-based methods were evaluated using experimental data and simulation studies. The proposed methods were used to analyze a microarray experiment in which the main interest lies in detecting genes that are both DEGs and PAGs, where DEGs are identified between two diet groups and PAGs are associated with four phenotypes reflecting the expression of leptin, adiponectin, insulin-like growth factor 1, and insulin. Model-based approaches provided a larger number of genes, which are both DEGs and PAGs, than other methods. Simulation studies showed that they have more power than other methods. Through analysis of data from experimental microarrays and simulation studies, the proposed model-based approach was shown to provide a more powerful result than the naïve approach and the hierarchical approach. Since our approach is model-based, it is very flexible and can easily handle different types of covariates.

  2. d

    Model-based cluster analysis of microarray gene-expression data

    • catalog.data.gov
    Updated Jul 24, 2025
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    National Institutes of Health (2025). Model-based cluster analysis of microarray gene-expression data [Dataset]. https://catalog.data.gov/dataset/model-based-cluster-analysis-of-microarray-gene-expression-data
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    Dataset updated
    Jul 24, 2025
    Dataset provided by
    National Institutes of Health
    Description

    Background Microarray technologies are emerging as a promising tool for genomic studies. The challenge now is how to analyze the resulting large amounts of data. Clustering techniques have been widely applied in analyzing microarray gene-expression data. However, normal mixture model-based cluster analysis has not been widely used for such data, although it has a solid probabilistic foundation. Here, we introduce and illustrate its use in detecting differentially expressed genes. In particular, we do not cluster gene-expression patterns but a summary statistic, the t-statistic. Results The method is applied to a data set containing expression levels of 1,176 genes of rats with and without pneumococcal middle-ear infection. Three clusters were found, two of which contain more than 95% genes with almost no altered gene-expression levels, whereas the third one has 30 genes with more or less differential gene-expression levels. Conclusions Our results indicate that model-based clustering of t-statistics (and possibly other summary statistics) can be a useful statistical tool to exploit differential gene expression for microarray data.

  3. Data from: Normalization and analysis of DNA microarray data by...

    • healthdata.gov
    • catalog.data.gov
    application/rdfxml +5
    Updated Jul 14, 2025
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    (2025). Normalization and analysis of DNA microarray data by self-consistency and local regression [Dataset]. https://healthdata.gov/NIH/Normalization-and-analysis-of-DNA-microarray-data-/exke-snpu
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    xml, csv, application/rssxml, application/rdfxml, tsv, jsonAvailable download formats
    Dataset updated
    Jul 14, 2025
    Description

    A robust semi-parametric normalization technique has been developed, based on the assumption that the large majority of genes will not have their relative expression levels changed from one treatment group to the next, and on the assumption that departures of the response from linearity are small and slowly varying. The method was tested using data simulated under various error models and it performs well.

  4. G

    Gene Expression Software Report

    • datainsightsmarket.com
    doc, pdf, ppt
    Updated Jun 24, 2025
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    Data Insights Market (2025). Gene Expression Software Report [Dataset]. https://www.datainsightsmarket.com/reports/gene-expression-software-1975313
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    doc, ppt, pdfAvailable download formats
    Dataset updated
    Jun 24, 2025
    Dataset authored and provided by
    Data Insights Market
    License

    https://www.datainsightsmarket.com/privacy-policyhttps://www.datainsightsmarket.com/privacy-policy

    Time period covered
    2025 - 2033
    Area covered
    Global
    Variables measured
    Market Size
    Description

    The gene expression software market is experiencing robust growth, driven by the increasing adoption of next-generation sequencing (NGS) technologies and the expanding need for advanced bioinformatics tools in research and clinical settings. The market's value in 2025 is estimated at $2.5 billion, reflecting a considerable increase from the previous years. A compound annual growth rate (CAGR) of approximately 15% is projected for the forecast period (2025-2033), indicating significant market expansion fueled by several key factors. These include the rising prevalence of chronic diseases demanding improved diagnostics and personalized medicine approaches, along with the substantial investments in genomic research across both academia and the pharmaceutical industry. Furthermore, the increasing availability of large-scale genomic datasets and the development of sophisticated algorithms for data analysis contribute significantly to market growth. The market is segmented by software type (e.g., microarray analysis, RNA-Seq analysis), application (e.g., drug discovery, disease diagnostics, basic research), and end-user (e.g., pharmaceutical companies, academic institutions, hospitals). Major players like Agilent Technologies, QIAGEN, Illumina, and others are driving innovation through the development of user-friendly interfaces, advanced analytical capabilities, and cloud-based solutions. However, the market faces certain challenges. High software costs, the need for specialized expertise to operate complex software, and data privacy concerns can hinder market penetration, particularly in resource-constrained settings. Nevertheless, ongoing technological advancements, coupled with the growing demand for efficient and accurate gene expression analysis, are expected to overcome these hurdles, ultimately ensuring a sustained period of substantial market growth. The competitive landscape is characterized by a mix of established players and emerging companies, fostering innovation and a diverse range of solutions catering to specific market needs. Future growth will likely be driven by the integration of artificial intelligence (AI) and machine learning (ML) to further enhance analytical capabilities and accelerate research outcomes.

  5. r

    L2L Microarray Analysis Tool

    • rrid.site
    • dknet.org
    Updated Jul 27, 2025
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    (2025). L2L Microarray Analysis Tool [Dataset]. http://identifiers.org/RRID:SCR_013440
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    Dataset updated
    Jul 27, 2025
    Description

    THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone.. Documented on August 26, 2019.Database of published microarray gene expression data, and a software tool for comparing that published data to a user''''s own microarray results. It is very simple to use - all you need is a web browser and a list of the probes that went up or down in your experiment. If you find L2L useful please consider contributing your published data to the L2L Microarray Database in the form of list files. L2L finds true biological patterns in gene expression data by systematically comparing your own list of genes to lists of genes that have been experimentally determined to be co-expressed in response to a particular stimulus - in other words, published lists of microarray results. The patterns it finds can point to the underlying disease process or affected molecular function that actually generated the observed changed in gene expression. Its insights are far more systematic than critical gene analyses, and more biologically relevant than pure Gene Ontology-based analyses. The publications included in the L2L MDB initially reflected topics thought to be related to Cockayne syndrome: aging, cancer, and DNA damage. Since then, the scope of the publications included has expanded considerably, to include chromatin structure, immune and inflammatory mediators, the hypoxic response, adipogenesis, growth factors, hormones, cell cycle regulators, and others. Despite the parochial origins of the database, the wide range of topics covered will make L2L of general interest to any investigator using microarrays to study human biology. In addition to the L2L Microarray Database, L2L contains three sets of lists derived from Gene Ontology categories: Biological Process, Cellular Component, and Molecular Function. As with the L2L MDB, each GO sub-category is represented by a text file that contains annotation information and a list of the HUGO symbols of the genes assigned to that sub-category or any of its descendants. You don''''t need to download L2L to use it to analyze your microarray data. There is an easy-to-use web-based analysis tool, and you have the option of downloading your results so you can view them at any time on your own computer, using any web browser. However, if you prefer, the entire L2L project, and all of its components, can be downloaded from the download page. Platform: Online tool, Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible

  6. m

    DNA Microarray Market Size, Share Analysis, Growth, & Industry Research...

    • mordorintelligence.com
    pdf,excel,csv,ppt
    Updated Dec 2, 2024
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    Mordor Intelligence (2024). DNA Microarray Market Size, Share Analysis, Growth, & Industry Research Report 2030 [Dataset]. https://www.mordorintelligence.com/industry-reports/dna-microarray-market
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    pdf,excel,csv,pptAvailable download formats
    Dataset updated
    Dec 2, 2024
    Dataset authored and provided by
    Mordor Intelligence
    License

    https://www.mordorintelligence.com/privacy-policyhttps://www.mordorintelligence.com/privacy-policy

    Time period covered
    2019 - 2030
    Area covered
    Global
    Description

    The DNA Microarray Market Report is Segmented by Product (cDNA Microarrays, Oligonucleotide Microarrays, Other Types), Application (Gene Expression Analysis, Genotyping & SNP Analysis, and More), Component (Consumables, and More), Technology (In-Situ Synthesized Arrays, Spotted Arrays, and More), End User (Pharmaceutical & Biotechnology Companies and More), and Geography. The Market Forecasts are Provided in Terms of Value (USD).

  7. Additional file 4: of Robust gene selection methods using weighting schemes...

    • springernature.figshare.com
    txt
    Updated May 31, 2023
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    Suyeon Kang; Jongwoo Song (2023). Additional file 4: of Robust gene selection methods using weighting schemes for microarray data analysis [Dataset]. http://doi.org/10.6084/m9.figshare.c.3870523_D4.v1
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    txtAvailable download formats
    Dataset updated
    May 31, 2023
    Dataset provided by
    Figsharehttp://figshare.com/
    figshare
    Authors
    Suyeon Kang; Jongwoo Song
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    R code for some examples of our method for detecting genes that are differentially expressed. (R 2 kb)

  8. M

    Microarray Analysis Report

    • datainsightsmarket.com
    doc, pdf, ppt
    Updated Jan 17, 2025
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    Data Insights Market (2025). Microarray Analysis Report [Dataset]. https://www.datainsightsmarket.com/reports/microarray-analysis-588470
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    pdf, doc, pptAvailable download formats
    Dataset updated
    Jan 17, 2025
    Dataset authored and provided by
    Data Insights Market
    License

    https://www.datainsightsmarket.com/privacy-policyhttps://www.datainsightsmarket.com/privacy-policy

    Time period covered
    2025 - 2033
    Area covered
    Global
    Variables measured
    Market Size
    Description

    The global microarray analysis market is projected to reach USD XXX million by 2033, growing at a CAGR of XX% during the forecast period 2025-2033. This growth can be attributed to the increasing demand for microarrays in various applications such as gene expression analysis, genotyping, and disease diagnostics. The market is also driven by the advancements in microarray technology, such as the development of high-throughput microarrays and the use of next-generation sequencing (NGS) platforms. Major market players in this industry include Affymetrix, Agilent Technologies, Sequenom, Roche NimbleGen, Illumnia, Applied Microarrays, Biomerieux, Discerna, Gyros, Luminex, NextGen Sciences, ProteoGenix, and Thermo Fisher Scientific. These companies are focusing on developing innovative microarray technologies and expanding their product portfolios through strategic acquisitions and partnerships. The market is also witnessing the emergence of new entrants, particularly in developing countries, which is expected to intensify competition and drive down prices.

  9. M

    Microarray Analysis Market Report

    • promarketreports.com
    doc, pdf, ppt
    Updated Jun 17, 2025
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    Pro Market Reports (2025). Microarray Analysis Market Report [Dataset]. https://www.promarketreports.com/reports/microarray-analysis-market-5278
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    doc, ppt, pdfAvailable download formats
    Dataset updated
    Jun 17, 2025
    Dataset authored and provided by
    Pro Market Reports
    License

    https://www.promarketreports.com/privacy-policyhttps://www.promarketreports.com/privacy-policy

    Time period covered
    2025 - 2033
    Area covered
    Global
    Variables measured
    Market Size
    Description

    The microarray analysis market encompasses a range of products and services, including: Consumables: Reagents, buffers, probes, and microarray slides Software: Tools for microarray data acquisition, analysis, and visualization Services: Microarray design, sample preparation, and data analysis outsourcing Recent developments include: August 2019 Lionheart Technologies LLC ("BioTek"), a renowned leader in the production, design, and sale of cutting-edge life science instruments, was purchased by Agilent Technologies, Inc. Cell imaging systems, microplate readers, washers, dispensers, automated incubators, and stackers are among its wide range of products., September 2018 To offer complete single nucleotide polymorphism (SNP) assay development, Novacyt Group cooperated with Applied Microarrays, Inc. on the production of point-of-care (POC) and high throughput DNA and protein arrays as well as customized microarrays.. Key drivers for this market are: GROWING APPLICATION AREAS OF MICROARRAYS, INCREASING INCIDENCE OF CANCER; FUNDING FOR GENOMIC AND PROTEOMIC RESEARCH. Potential restraints include: PRESENCE OF SUBSTITUTES AND LACK OF SKILLED PROFESSIONALS. Notable trends are: Increasing applications of microarray analysis are driving market growth..

  10. B

    Coexpression Analysis of Human Genes Across Many Microarray Data Sets

    • borealisdata.ca
    Updated Mar 12, 2019
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    Homin K Lee; Amy K Hsu; Jon Sajdak; Jie Qin; Paul Pavlidis (2019). Coexpression Analysis of Human Genes Across Many Microarray Data Sets [Dataset]. http://doi.org/10.5683/SP2/JOJYOP
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    CroissantCroissant is a format for machine-learning datasets. Learn more about this at mlcommons.org/croissant.
    Dataset updated
    Mar 12, 2019
    Dataset provided by
    Borealis
    Authors
    Homin K Lee; Amy K Hsu; Jon Sajdak; Jie Qin; Paul Pavlidis
    License

    CC0 1.0 Universal Public Domain Dedicationhttps://creativecommons.org/publicdomain/zero/1.0/
    License information was derived automatically

    Dataset funded by
    ABCF
    Description

    We present a large-scale analysis of mRNA coexpression based on 60 large human data sets containing a total of 3924 microarrays. We sought pairs of genes that were reliably coexpressed (based on the correlation of their expression profiles) in multiple data sets, establishing a high-confidence network of 8805 genes connected by 220,649 “coexpression links” that are observed in at least three data sets. Confirmed positive correlations between genes were much more common than confirmed negative correlations. We show that confirmation of coexpression in multiple data sets is correlated with functional relatedness, and show how cluster analysis of the network can reveal functionally coherent groups of genes. Our findings demonstrate how the large body of accumulated microarray data can be exploited to increase the reliability of inferences about gene function.

  11. M

    Microarray Analysis Industry Report

    • datainsightsmarket.com
    doc, pdf, ppt
    Updated Jun 6, 2025
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    Data Insights Market (2025). Microarray Analysis Industry Report [Dataset]. https://www.datainsightsmarket.com/reports/microarray-analysis-industry-8632
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    ppt, pdf, docAvailable download formats
    Dataset updated
    Jun 6, 2025
    Dataset authored and provided by
    Data Insights Market
    License

    https://www.datainsightsmarket.com/privacy-policyhttps://www.datainsightsmarket.com/privacy-policy

    Time period covered
    2025 - 2033
    Area covered
    Global
    Variables measured
    Market Size
    Description

    The size of the Microarray Analysis Industry market was valued at USD XX Million in 2023 and is projected to reach USD XXX Million by 2032, with an expected CAGR of 5.00% during the forecast period. Microarray is a powerful technology that lets you study thousands of genes in one go. It involves attaching DNA probes to a solid surface – a microarray chip – and then hybridising fluorescently labelled DNA or RNA to those probes. The intensity of the fluorescence at each spot on the chip tells you how much of the associated gene is in the sample. This can be used to find genes that are differentially expressed under different conditions – diseased vs healthy tissues or drug treated vs untreated cells. But this is a complex technique and requires careful thought about experimental design and data interpretation. Microarray has changed many areas of research (cancer, drug discovery and genetic diagnostics). In cancer research it helps find genes involved in tumour development and progression. This can lead to biomarkers for early detection and therapeutic targets. In drug discovery it’s used to screen large libraries of compounds to see which ones modulate gene expression; so can find new drug candidates. In genetic diagnostics it’s used to find genetic variations associated with inherited diseases like cystic fibrosis and Huntington’s disease. Overall microarray is a key tool to understand the interactions of genes and their products in biological systems. Although it’s used in many areas, the impact it has in medicine and biotech is biggest. Recent developments include: In June 2022, Ariceum Therapeutics launched with EUR 25M Series A to advance its lead asset, Satoreotide, for the treatment of low- and high-grade neuroendocrine cancers., In May 2022, Pfizer Inc. and Biohaven Pharmaceutical Holding Company Ltd reported that the companies entered a definitive agreement under which Pfizer will acquire Biohaven, the maker of NURTEC ODT, an innovative dual-acting migraine therapy approved for both acute treatment and episodic prevention of migraine in adults.. Key drivers for this market are: Growing Burden of Chronic Diseases, Technological Advancements in Diagnostic Testing. Potential restraints include: Reimbursement Issues. Notable trends are: The Instrument Segment is Expected to Hold a Major Market Share in the Peptide Microarray Market.

  12. d

    Replication data for: Diverse Correlation Structures in Microarray Gene...

    • datamed.org
    • dataverse.harvard.edu
    Updated Oct 8, 2007
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    (2007). Replication data for: Diverse Correlation Structures in Microarray Gene Expression Data [Dataset]. https://datamed.org/display-item.php?repository=0012&idName=ID&id=56d4b887e4b0e644d313513b
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    Dataset updated
    Oct 8, 2007
    Description

    It is well-known that correlations in microarray data represent a serious nuisance deteriorating the performance of gene selection procedures. This paper is intended to demonstrate that the correlation structure of microarray data provides a rich source of useful information. We discuss distinct correlation substructures revealed in microarray gene expression data by an appropriate ordering of genes. These substructures include stochastic proportionality of expression signals in a large percentage of all gene pairs, negative correlations hidden in ordered gene triples, and a long sequence of weakly dependent random variables associated with ordered pairs of genes. The reported striking regularities are of general biological interest and they also have far-reaching implications for theory and practice of statistical methods of microarray data analysis. We illustrate the latter point with a method for testing differential expression of non-overlapping gene pairs. While designed for testing a different null hypothesis, this method provides an order of magnitude more accurate control of type 1 error rate compared to conventional methods of individual gene expre ssion profiling. In addition, this method is robust to the technical noise. Quantitative inference of the correlation structure has the potential to extend the analysis of microarray data far beyond currently practiced methods.

  13. D

    DNA Microarray Report

    • datainsightsmarket.com
    doc, pdf, ppt
    Updated May 16, 2025
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    Data Insights Market (2025). DNA Microarray Report [Dataset]. https://www.datainsightsmarket.com/reports/dna-microarray-1473800
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    ppt, pdf, docAvailable download formats
    Dataset updated
    May 16, 2025
    Dataset authored and provided by
    Data Insights Market
    License

    https://www.datainsightsmarket.com/privacy-policyhttps://www.datainsightsmarket.com/privacy-policy

    Time period covered
    2025 - 2033
    Area covered
    Global
    Variables measured
    Market Size
    Description

    The DNA microarray market, valued at $1206.4 million in 2025, is projected to experience steady growth, driven by increasing applications in genomics research, personalized medicine, and drug discovery. The market's Compound Annual Growth Rate (CAGR) of 4.1% from 2025 to 2033 indicates a consistent expansion, fueled by advancements in microarray technology, leading to improved sensitivity, accuracy, and throughput. Key application areas like gene expression analysis, genotyping, and genome cytogenetics are experiencing significant growth, particularly in oligonucleotide DNA microarrays (oDNA) which are favored for their high specificity and sensitivity. The market is segmented geographically, with North America holding a dominant share due to robust research infrastructure and high healthcare expenditure. Europe and Asia Pacific are also showing promising growth, driven by increasing investments in life sciences and expanding diagnostic capabilities. While regulatory hurdles and the emergence of next-generation sequencing (NGS) technologies pose some challenges, the DNA microarray market's versatility, established reliability, and cost-effectiveness in specific applications ensures its continued relevance within the broader genomics landscape. The competitive landscape is characterized by established players like Illumina, Affymetrix, Agilent Technologies, and Roche NimbleGen, along with smaller, specialized companies. These companies are actively engaged in developing innovative microarray technologies and expanding their product portfolios to cater to the growing demand from various research and clinical settings. Furthermore, strategic collaborations, partnerships, and acquisitions are expected to shape the competitive dynamics in the coming years. Continued technological advancements, such as the development of high-density microarrays and improved data analysis tools, will further drive market growth. The focus on personalized medicine, coupled with increasing government funding for genomic research, will play a crucial role in sustaining the market's upward trajectory throughout the forecast period.

  14. R

    Microarray Analysis Market Market Research Report 2033

    • researchintelo.com
    csv, pdf, pptx
    Updated Jul 24, 2025
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    Research Intelo (2025). Microarray Analysis Market Market Research Report 2033 [Dataset]. https://researchintelo.com/report/microarray-analysis-market-market
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    pdf, csv, pptxAvailable download formats
    Dataset updated
    Jul 24, 2025
    Dataset authored and provided by
    Research Intelo
    License

    https://researchintelo.com/privacy-and-policyhttps://researchintelo.com/privacy-and-policy

    Time period covered
    2024 - 2033
    Area covered
    Global
    Description

    Microarray Analysis Market Outlook



    According to our latest research, the global microarray analysis market size in 2024 is valued at USD 5.2 billion. The market is experiencing robust expansion, registering a CAGR of 8.3% from 2025 to 2033. By 2033, the market is projected to reach USD 10.5 billion, fueled by the surging demand for high-throughput genomic and proteomic research, technological advancements, and the rising prevalence of chronic diseases. The growing adoption of microarray technologies in clinical diagnostics, drug discovery, and personalized medicine continues to drive significant growth in this sector.




    One of the primary growth factors for the microarray analysis market is the rapid advancement in genomics and proteomics research. The increasing focus on understanding the genetic basis of diseases and the need for comprehensive gene expression profiling have propelled the adoption of microarray analysis in both research and clinical settings. The integration of microarray platforms in next-generation sequencing workflows has further enhanced their utility, allowing for the simultaneous analysis of thousands of genes or proteins. Additionally, the declining cost of microarray technologies has made them more accessible to a broader range of laboratories and research institutions, fostering widespread adoption across the globe.




    Another significant driver for market growth is the escalating demand for personalized medicine and targeted therapeutics. Microarray analysis plays a pivotal role in identifying genetic variations, gene mutations, and biomarkers associated with various diseases, enabling the development of individualized treatment plans. Pharmaceutical and biotechnology companies are increasingly leveraging microarray technologies for drug discovery, biomarker identification, and pharmacogenomics studies. This trend is further amplified by the increasing prevalence of chronic diseases such as cancer, cardiovascular disorders, and autoimmune conditions, which require precise diagnostic and therapeutic approaches. The growing emphasis on early disease detection and prevention is also contributing to the expansion of the microarray analysis market.




    Government initiatives and funding for genomic research have further accelerated the growth of the microarray analysis market. Several countries are investing heavily in genomics and precision medicine programs, fostering collaborations between academic institutions, research organizations, and industry players. These initiatives have led to the establishment of advanced research infrastructure and the development of innovative microarray platforms. Moreover, regulatory agencies are increasingly recognizing the clinical utility of microarray-based tests, leading to greater acceptance and integration of these technologies in routine diagnostic workflows. The continuous evolution of data analysis software and bioinformatics tools has also enhanced the accuracy and reliability of microarray data, driving further market growth.




    Regionally, North America dominates the microarray analysis market, driven by a well-established healthcare infrastructure, significant investments in research and development, and the presence of leading market players. Europe follows closely, benefiting from robust government support for genomics research and a strong focus on personalized medicine. The Asia Pacific region is emerging as a lucrative market, fueled by rising healthcare expenditures, increasing awareness about advanced diagnostic technologies, and expanding research activities in countries such as China, India, and Japan. Latin America and the Middle East & Africa are also witnessing steady growth, supported by improving healthcare systems and growing investments in life sciences research.



    Product & Service Analysis



    The product & service segment of the microarray analysis market is broadly categorized into consumables, instruments, software, and services. Consumables, which include microarray chips, reagents, and buffers, account for a significant share of the market due to their recurring demand in both research and clinical applications. The continuous need for high-quality consumables to ensure the accuracy and reliability of microarray experiments drives the growth of this sub-segment. Additionally, advancements in consumable design and the introduction of specialized arrays tailored for specific applications, such as cance

  15. d

    Integrated Tumor Transcriptome Array and Clinical data Analysis

    • dknet.org
    • scicrunch.org
    • +2more
    Updated Jan 8, 2006
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    (2006). Integrated Tumor Transcriptome Array and Clinical data Analysis [Dataset]. http://identifiers.org/RRID:SCR_008182
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    Dataset updated
    Jan 8, 2006
    Description

    THIS RESOURCE IS NO LONGER IN SERVICE, documented on 6/12/25. ITTACA is a database created for Integrated Tumor Transcriptome Array and Clinical data Analysis. ITTACA centralizes public datasets containing both gene expression and clinical data and currently focuses on the types of cancer that are of particular interest to the Institut Curie: breast carcinoma, bladder carcinoma, and uveal melanoma. ITTACA is developed by the Institut Curie Bioinformatics group and the Molecular Oncology group of UMR144 CNRS/Institut Curie. A web interface allows users to carry out different class comparison analyses, including comparison of expression distribution profiles, tests for differential expression, patient survival analyses, and users can define their own patient groups according to clinical data or gene expression levels. The different functionalities implemented in ITTACA are: - To test if one or more gene, of your choice, is differentially expressed between two groups of samples exhibiting distinct phenotypes (Student and Wilcoxon tests). - The detection of genes differentially expressed (Significance Analysis of Microarrays) between two groups of samples. - The creation of histograms which represent the expression level according to a clinical parameter for each sample. - The computation of Kaplan Meier survival curves for each group. ITTACA has been developed to be a useful tool for comparing personal results to the existing results in the field of transcriptome studies with microarrays.

  16. d

    Data from: Microarray analysis of subcutaneous adipose tissue from mature...

    • catalog.data.gov
    • cloud.csiss.gmu.edu
    • +1more
    Updated Apr 21, 2025
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    Agricultural Research Service (2025). Data from: Microarray analysis of subcutaneous adipose tissue from mature cows with divergent body weight gain after feed restriction and realimentation [Dataset]. https://catalog.data.gov/dataset/data-from-microarray-analysis-of-subcutaneous-adipose-tissue-from-mature-cows-with-diverge-9e673
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    Dataset updated
    Apr 21, 2025
    Dataset provided by
    Agricultural Research Service
    Description

    Body weight response to periods of feed restriction and realimentation is critical and relevant to the agricultural industry. The purpose of this study was to evaluate differentially expressed genes identified in subcutaneous adipose tissue collected from cows divergent in body weight (BW) gain after feed restriction and realimentation. We compared adipose samples from cows with greater gain based on average daily gain (ADG) during realimentation with samples from cows with lesser gain. Specifically, there were four comparisons including two comparing the high and low gain animals across each feeding period (feed restriction and realimentation) and two that compared differences in feed restriction and realimentation across high or low gain classifications. Using microarray analysis, we provide a set of differentially expressed genes identified between the high and low gain at both periods of nutrient restriction and realimentation. These data identify multiple differentially expressed genes between these two phenotypes across both nutritional environments. Resources in this dataset:Resource Title: NCBI Gene Expression Omnibus (GEO) Accession GSE94746 Display . File Name: Web Page, url: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94746 Evaluation of the naturally occurring transcriptome variation among beef cows with divergent gain.

  17. o

    Data from: Microarray Analysis Reveals Distinct Gene Expression Profiles...

    • omicsdi.org
    xml
    Updated Mar 31, 2011
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    Kunle Odunsi,Shashikant Lele,Joshua Kesterson,song liu,Kimberly Clark,Sing Liu,Paulette Mhawech-Fauceglia,Dan Wang (2011). Microarray Analysis Reveals Distinct Gene Expression Profiles Among Different Tumor Histology, Stage and Disease Outcomes in Endometrial Adenocarcinoma [Dataset]. https://www.omicsdi.org/dataset/arrayexpress-repository/E-GEOD-23518
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    xmlAvailable download formats
    Dataset updated
    Mar 31, 2011
    Authors
    Kunle Odunsi,Shashikant Lele,Joshua Kesterson,song liu,Kimberly Clark,Sing Liu,Paulette Mhawech-Fauceglia,Dan Wang
    Variables measured
    Transcriptomics,Multiomics
    Description

    The goal of this study was to identify differentially expressed genes (DEG) between early vs. late stage endometrioid adenocarcinoma (EAC) and uterine serous carcinoma (USC), as well as between disease outcomes in each of the two histological subtypes. Gene expression profiles of 20 cancer samples were analyzed (EAC =10, USC =10) using the human genome wide illumina bead microarrays carrying 48,000 genes.

  18. D

    Dna And Gene Microarray Market Report | Global Forecast From 2025 To 2033

    • dataintelo.com
    csv, pdf, pptx
    Updated Oct 5, 2024
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    Dataintelo (2024). Dna And Gene Microarray Market Report | Global Forecast From 2025 To 2033 [Dataset]. https://dataintelo.com/report/dna-and-gene-microarray-market
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    pptx, csv, pdfAvailable download formats
    Dataset updated
    Oct 5, 2024
    Dataset authored and provided by
    Dataintelo
    License

    https://dataintelo.com/privacy-and-policyhttps://dataintelo.com/privacy-and-policy

    Time period covered
    2024 - 2032
    Area covered
    Global
    Description

    DNA and Gene Microarray Market Outlook



    The global DNA and gene microarray market size was valued at approximately USD 4.2 billion in 2023 and is expected to reach around USD 7.9 billion by 2032, expanding at a CAGR of 7.2% during the forecast period. The burgeoning growth in this market is largely driven by the increasing utilization of DNA and gene microarrays in the fields of genomics and personalized medicine. The rising prevalence of chronic diseases, advancements in microarray technologies, and the increasing funding for genomic research are significant factors fueling the market growth.



    One of the primary growth drivers for the DNA and gene microarray market is the escalating demand for personalized medicine. The ability of microarrays to analyze and interpret complex genetic data has revolutionized the approach to personalized treatment plans, making it possible to tailor medical interventions to individual genetic profiles. This is particularly beneficial in the treatment of cancer, where understanding genetic mutations can lead to more effective and targeted therapies. Additionally, the reduction in the cost of sequencing technologies has made this approach more accessible and widespread, further propelling market growth.



    Another significant factor contributing to the market expansion is the increasing prevalence of chronic diseases such as cancer, diabetes, and cardiovascular disorders. These diseases often involve genetic components that can be studied and understood through the use of DNA and gene microarrays. As the global population ages and the incidence of chronic diseases rises, the demand for advanced diagnostic and treatment tools like microarrays is expected to grow. This is evident in the increasing number of research projects and clinical trials employing microarray technologies to explore disease mechanisms and develop new treatments.



    Technological advancements in microarray platforms are also playing a crucial role in market growth. Innovations such as high-density microarrays, which allow for the analysis of thousands of genes simultaneously, and improvements in data analysis software have enhanced the accuracy and efficiency of these tools. The development of portable and user-friendly microarray instruments is making it easier for laboratories and research institutions to adopt these technologies. Furthermore, the integration of artificial intelligence and machine learning in microarray data analysis is expected to offer new insights and drive future research endeavors.



    Regionally, North America holds the largest share of the DNA and gene microarray market, driven by the presence of leading biotechnology firms, extensive research activities, and favorable government funding. Europe follows closely, with significant contributions from countries like the UK and Germany, which have robust healthcare and research infrastructures. The Asia Pacific region is expected to witness the fastest growth during the forecast period, supported by increasing investments in biotechnology, rising healthcare expenditure, and the growing focus on personalized medicine in countries such as China and India.



    Product Type Analysis



    The DNA and gene microarray market can be segmented by product type into consumables, instruments, and software. Consumables represent a significant portion of the market due to their recurrent usage in experiments and diagnostics. These include reagents, probes, and microarray chips, which are essential components for conducting genetic analysis. The continuous advancements in consumables, enabling higher sensitivity and specificity, are expected to drive their demand. Additionally, the increasing number of research activities and clinical studies employing microarray technologies further fuels the growth of this segment.



    Instruments, another critical segment, include microarray scanners, hybridization ovens, and other hardware used in the preparation and analysis of microarrays. The development of high-throughput microarray scanners and the adoption of automated platforms have significantly improved efficiency and accuracy in genetic analysis. The increasing demand for portable and user-friendly instruments in research and clinical settings is expected to contribute to the growth of this segment. Moreover, the integration of advanced imaging technologies in microarray instruments is enhancing data quality and analysis capabilities.



    Software plays a pivotal role in the DNA and gene microarray market by enabling the analysis and interpretation of complex genetic data. Advanced software solution

  19. Microarray Analysis of Space-flown Murine Thymus Tissue

    • catalog.data.gov
    • s.cnmilf.com
    • +3more
    Updated Apr 24, 2025
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    National Aeronautics and Space Administration (2025). Microarray Analysis of Space-flown Murine Thymus Tissue [Dataset]. https://catalog.data.gov/dataset/microarray-analysis-of-space-flown-murine-thymus-tissue-91baf
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    Dataset updated
    Apr 24, 2025
    Dataset provided by
    NASAhttp://nasa.gov/
    Description

    Microarray Analysis of Space-flown Murine Thymus Tissue Reveals Changes in Gene Expression Regulating Stress and Glucocorticoid Receptors. We used microarrays to detail the gene expression of space-flown thymic tissue and identified distinct classes of up-regulated genes during this process. We report here microarray gene expression analysis in young adult C57BL/6NTac mice at 8 weeks of age after exposure to spaceflight aboard the space shuttle (STS-118) for a period of 13 days. Upon conclusion of the mission thymus lobes were extracted from space flown mice (FLT) as well as age- and sex-matched ground control mice similarly housed in animal enclosure modules (AEM). mRNA was extracted and an automated array analysis for gene expression was performed. Examination of the microarray data revealed 970 individual probes that had a 1.5 fold or greater change. When these data were averaged (n=4) we identified 12 genes that were significantly up- or down-regulated by at least 1.5 fold after spaceflight (p < 0.05). Together these data demonstrate that spaceflight induces significant changes in the thymic mRNA expression of genes that regulate stress glucocorticoid receptor metabolism and T cell signaling activity. These data explain in part the reported systemic compromise of the immune system after exposure to the microgravity of space.

  20. R

    DNA Microarray Market Market Research Report 2033

    • researchintelo.com
    csv, pdf, pptx
    Updated Jul 24, 2025
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    Research Intelo (2025). DNA Microarray Market Market Research Report 2033 [Dataset]. https://researchintelo.com/report/dna-microarray-market-market
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    pdf, csv, pptxAvailable download formats
    Dataset updated
    Jul 24, 2025
    Dataset authored and provided by
    Research Intelo
    License

    https://researchintelo.com/privacy-and-policyhttps://researchintelo.com/privacy-and-policy

    Time period covered
    2024 - 2033
    Area covered
    Global
    Description

    DNA Microarray Market Outlook



    According to our latest research, the global DNA Microarray market size reached USD 2.13 billion in 2024, reflecting robust demand across healthcare, research, and pharmaceutical sectors. The market is projected to grow at a CAGR of 6.8% from 2025 to 2033, reaching an estimated USD 3.92 billion by 2033. This sustained growth is driven by the increasing adoption of precision medicine, advancements in genomics, and the rising prevalence of chronic diseases worldwide. As per our latest research, the DNA microarray market is experiencing significant momentum, underpinned by technological innovations and expanding applications in clinical diagnostics and drug discovery.



    One of the primary growth factors for the DNA microarray market is the surge in genomics research and personalized medicine initiatives. With the cost of genome sequencing steadily declining and bioinformatics tools becoming more sophisticated, researchers and clinicians are increasingly relying on DNA microarray technology for high-throughput gene expression analysis, genotyping, and biomarker discovery. The ability of microarrays to simultaneously analyze thousands of genes has revolutionized molecular biology, enabling rapid identification of disease-associated genetic variants and supporting the development of targeted therapies. This trend is particularly pronounced in oncology, infectious diseases, and rare genetic disorders, where DNA microarrays are instrumental in patient stratification and therapeutic decision-making.



    Another significant driver is the growing investment by governments and private organizations in life sciences research and healthcare infrastructure. Several countries are launching national genomics programs, fostering collaborations between academic institutions, research centers, and biotechnology companies. These initiatives are not only fueling demand for advanced DNA microarray platforms but are also promoting the integration of microarray data with next-generation sequencing (NGS) and other omics technologies. Additionally, the pharmaceutical industry is leveraging DNA microarrays for drug discovery, toxicogenomics, and pharmacogenomics studies, further expanding the market's scope. The ongoing shift towards preventive healthcare and early disease detection is also propelling the adoption of microarray-based diagnostic assays in clinical laboratories.



    Technological advancements in microarray fabrication, automation, and data analysis are further accelerating market growth. The development of high-density oligonucleotide arrays, multiplexed assays, and portable microarray devices has enhanced the sensitivity, specificity, and throughput of DNA microarray experiments. Integration with cloud computing and artificial intelligence is enabling more efficient data management and interpretation, reducing turnaround times, and facilitating real-time decision-making. These innovations are lowering barriers to entry for smaller laboratories and emerging markets, democratizing access to cutting-edge genomic tools and contributing to the global expansion of the DNA microarray market.



    From a regional perspective, North America continues to dominate the DNA microarray market, accounting for the largest revenue share in 2024, thanks to its advanced healthcare ecosystem, strong research infrastructure, and presence of leading market players. Europe follows closely, driven by robust public funding and collaborative research networks. Meanwhile, Asia Pacific is emerging as a high-growth region, propelled by increasing healthcare expenditure, rising awareness of genomics, and expanding biotechnology industries in countries such as China, India, and Japan. Latin America and the Middle East & Africa are also witnessing gradual uptake, supported by improving healthcare infrastructure and growing investments in molecular diagnostics.



    Product Type Analysis



    The DNA microarray market is segmented by product type into oligonucleotide DNA microarrays, complementary DNA (cDNA) microarrays, SNP DNA microarrays, and others. Oligonucleotide DNA microarrays currently hold the largest market share, owing to their high specificity, flexibility in probe design, and widespread use in gene expression profiling and genotyping studies. These arrays are favored for their ability to detect subtle genetic variations and provide reproducible results, making them indispensable in both basic research and clinical applications. The ongoing refinement of oligonucleotide synthesis and surfa

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Samuel Sunghwan Cho; Yongkang Kim; Joon Yoon; Minseok Seo; Su-kyung Shin; Eun-Young Kwon; Sung-Eun Kim; Yun-Jung Bae; Seungyeoun Lee; Mi-Kyung Sung; Myung-Sook Choi; Taesung Park (2023). A Model-Based Joint Identification of Differentially Expressed Genes and Phenotype-Associated Genes [Dataset]. http://doi.org/10.1371/journal.pone.0149086

A Model-Based Joint Identification of Differentially Expressed Genes and Phenotype-Associated Genes

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3 scholarly articles cite this dataset (View in Google Scholar)
pptxAvailable download formats
Dataset updated
May 31, 2023
Dataset provided by
PLOS ONE
Authors
Samuel Sunghwan Cho; Yongkang Kim; Joon Yoon; Minseok Seo; Su-kyung Shin; Eun-Young Kwon; Sung-Eun Kim; Yun-Jung Bae; Seungyeoun Lee; Mi-Kyung Sung; Myung-Sook Choi; Taesung Park
License

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Description

Over the last decade, many analytical methods and tools have been developed for microarray data. The detection of differentially expressed genes (DEGs) among different treatment groups is often a primary purpose of microarray data analysis. In addition, association studies investigating the relationship between genes and a phenotype of interest such as survival time are also popular in microarray data analysis. Phenotype association analysis provides a list of phenotype-associated genes (PAGs). However, it is sometimes necessary to identify genes that are both DEGs and PAGs. We consider the joint identification of DEGs and PAGs in microarray data analyses. The first approach we used was a naïve approach that detects DEGs and PAGs separately and then identifies the genes in an intersection of the list of PAGs and DEGs. The second approach we considered was a hierarchical approach that detects DEGs first and then chooses PAGs from among the DEGs or vice versa. In this study, we propose a new model-based approach for the joint identification of DEGs and PAGs. Unlike the previous two-step approaches, the proposed method identifies genes simultaneously that are DEGs and PAGs. This method uses standard regression models but adopts different null hypothesis from ordinary regression models, which allows us to perform joint identification in one-step. The proposed model-based methods were evaluated using experimental data and simulation studies. The proposed methods were used to analyze a microarray experiment in which the main interest lies in detecting genes that are both DEGs and PAGs, where DEGs are identified between two diet groups and PAGs are associated with four phenotypes reflecting the expression of leptin, adiponectin, insulin-like growth factor 1, and insulin. Model-based approaches provided a larger number of genes, which are both DEGs and PAGs, than other methods. Simulation studies showed that they have more power than other methods. Through analysis of data from experimental microarrays and simulation studies, the proposed model-based approach was shown to provide a more powerful result than the naïve approach and the hierarchical approach. Since our approach is model-based, it is very flexible and can easily handle different types of covariates.

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