100+ datasets found
  1. Data from: PDD Graph: Bridging Electronic Medical Records and Biomedical...

    • springernature.figshare.com
    txt
    Updated May 31, 2023
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    Meng Wang; Jiaheng Zhang; Jun Liu; Wei Hu; Sen Wang; Xue Li; Wenqiang Liu (2023). PDD Graph: Bridging Electronic Medical Records and Biomedical Knowledge Graphs via Entity Linking [Dataset]. http://doi.org/10.6084/m9.figshare.5242138
    Explore at:
    txtAvailable download formats
    Dataset updated
    May 31, 2023
    Dataset provided by
    Figsharehttp://figshare.com/
    Authors
    Meng Wang; Jiaheng Zhang; Jun Liu; Wei Hu; Sen Wang; Xue Li; Wenqiang Liu
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Patient-drug-disease (PDD) Graph dataset, utilising Electronic medical records (EMRS) and biomedical Knowledge graphs. The novel framework to construct the PDD graph is described in the associated publication.PDD is an RDF graph consisting of PDD facts, where a PDD fact is represented by an RDF triple to indicate that a patient takes a drug or a patient is diagnosed with a disease. For instance, (pdd:274671, pdd:diagnosed, sepsis)Data files are in .nt N-Triple format, a line-based syntax for an RDF graph. These can be accessed via openly-available text edit software.diagnose_icd_information.nt - contains RDF triples mapping patients to diagnoses. For example:(pdd:18740, pdd:diagnosed, icd99592),where pdd:18740 is a patient entity, and icd99592 is the ICD-9 code of sepsis.drug_patients.nt- contains RDF triples mapping patients to drugs. For example:(pdd:18740, pdd:prescribed, aspirin),where pdd:18740 is a patient entity, and aspirin is the drug's name.Background:Electronic medical records contain multi-format electronic medical data that consist of an abundance of medical knowledge. Faced with patients' symptoms, experienced caregivers make the right medical decisions based on their professional knowledge, which accurately grasps relationships between symptoms, diagnoses and corresponding treatments. In the associated paper, we aim to capture these relationships by constructing a large and high-quality heterogenous graph linking patients, diseases, and drugs (PDD) in EMRs. Specifically, we propose a novel framework to extract important medical entities from MIMIC-III (Medical Information Mart for Intensive Care III) and automatically link them with the existing biomedical knowledge graphs, including ICD-9 ontology and DrugBank. The PDD graph presented in this paper is accessible on the Web via the SPARQL endpoint as well as in .nt format in this repository, and provides a pathway for medical discovery and applications, such as effective treatment recommendations.De-identificationIt is necessary to mention that MIMIC-III contains clinical information of patients. Although the protected health information was de-identifed, researchers who seek to use more clinical data should complete an on-line training course and then apply for the permission to download the complete MIMIC-III dataset: https://mimic.physionet.org/

  2. T

    Switzerland Exports of maps, hydrographic or similar charts (printed) to...

    • tradingeconomics.com
    csv, excel, json, xml
    Updated Jun 4, 2024
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    TRADING ECONOMICS (2024). Switzerland Exports of maps, hydrographic or similar charts (printed) to Jordan [Dataset]. https://tradingeconomics.com/switzerland/exports/jordan/maps-hydrographic-charts-atlases
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    csv, json, excel, xmlAvailable download formats
    Dataset updated
    Jun 4, 2024
    Dataset authored and provided by
    TRADING ECONOMICS
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Jan 1, 1990 - Dec 31, 2025
    Area covered
    Switzerland
    Description

    Switzerland Exports of maps, hydrographic or similar charts (printed) to Jordan was US$10 during 2019, according to the United Nations COMTRADE database on international trade. Switzerland Exports of maps, hydrographic or similar charts (printed) to Jordan - data, historical chart and statistics - was last updated on July of 2025.

  3. T

    Romania Exports of maps, hydrographic or similar charts (printed) to Poland

    • tradingeconomics.com
    csv, excel, json, xml
    Updated Aug 9, 2024
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    TRADING ECONOMICS (2024). Romania Exports of maps, hydrographic or similar charts (printed) to Poland [Dataset]. https://tradingeconomics.com/romania/exports/poland/maps-hydrographic-charts-atlases
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    json, xml, csv, excelAvailable download formats
    Dataset updated
    Aug 9, 2024
    Dataset authored and provided by
    TRADING ECONOMICS
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Jan 1, 1990 - Dec 31, 2025
    Area covered
    Romania
    Description

    Romania Exports of maps, hydrographic or similar charts (printed) to Poland was US$10 during 2024, according to the United Nations COMTRADE database on international trade. Romania Exports of maps, hydrographic or similar charts (printed) to Poland - data, historical chart and statistics - was last updated on July of 2025.

  4. J

    Jordan PISA science scores - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Jun 9, 2024
    + more versions
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    Globalen LLC (2024). Jordan PISA science scores - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/Jordan/pisa_science_scores/
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    excel, xml, csvAvailable download formats
    Dataset updated
    Jun 9, 2024
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Dec 31, 2006 - Dec 31, 2022
    Area covered
    Jordan
    Description

    Jordan: PISA science scores: The latest value from 2022 is 374.527 index points, a decline from 429.252 index points in 2018. In comparison, the world average is 449.005 index points, based on data from 78 countries. Historically, the average for Jordan from 2006 to 2022 is 409.863 index points. The minimum value, 374.527 index points, was reached in 2022 while the maximum of 429.252 index points was recorded in 2018.

  5. I

    Ivory Coast Share of services - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Nov 21, 2016
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    Globalen LLC (2016). Ivory Coast Share of services - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/Ivory-Coast/Share_of_services/
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    xml, csv, excelAvailable download formats
    Dataset updated
    Nov 21, 2016
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Dec 31, 1960 - Dec 31, 2024
    Area covered
    Côte d'Ivoire
    Description

    The Ivory Coast: Value added in the services sector as percent of GDP: The latest value from 2024 is 53.87 percent, an increase from 52.7 percent in 2023. In comparison, the world average is 55.77 percent, based on data from 151 countries. Historically, the average for the Ivory Coast from 1960 to 2024 is 46.67 percent. The minimum value, 34.01 percent, was reached in 2011 while the maximum of 60.58 percent was recorded in 1977.

  6. T

    Switzerland Exports of maps, hydrographic or similar charts (printed) to...

    • tradingeconomics.com
    csv, excel, json, xml
    Updated Jun 4, 2024
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    TRADING ECONOMICS (2024). Switzerland Exports of maps, hydrographic or similar charts (printed) to Uzbekistan [Dataset]. https://tradingeconomics.com/switzerland/exports/uzbekistan/maps-hydrographic-charts-atlases
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    json, excel, xml, csvAvailable download formats
    Dataset updated
    Jun 4, 2024
    Dataset authored and provided by
    TRADING ECONOMICS
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Jan 1, 1990 - Dec 31, 2025
    Area covered
    Switzerland
    Description

    Switzerland Exports of maps, hydrographic or similar charts (printed) to Uzbekistan was US$5.99 Thousand during 2013, according to the United Nations COMTRADE database on international trade. Switzerland Exports of maps, hydrographic or similar charts (printed) to Uzbekistan - data, historical chart and statistics - was last updated on July of 2025.

  7. S

    Somalia Livestock production index - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Mar 1, 2017
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    Globalen LLC (2017). Somalia Livestock production index - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/Somalia/livestock_production_index/
    Explore at:
    xml, excel, csvAvailable download formats
    Dataset updated
    Mar 1, 2017
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Dec 31, 1961 - Dec 31, 2022
    Area covered
    Somalia
    Description

    Somalia: Livestock production index (2004-2006 = 100): The latest value from 2022 is 98.6 index points, a decline from 99.7 index points in 2021. In comparison, the world average is 112.3 index points, based on data from 188 countries. Historically, the average for Somalia from 1961 to 2022 is 86.5 index points. The minimum value, 47.8 index points, was reached in 1961 while the maximum of 110.2 index points was recorded in 2013.

  8. Z

    Zambia Fertilizer use - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Apr 23, 2016
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    Globalen LLC (2016). Zambia Fertilizer use - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/Zambia/fertilizer_use/
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    excel, xml, csvAvailable download formats
    Dataset updated
    Apr 23, 2016
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Dec 31, 1961 - Dec 31, 2022
    Area covered
    Zambia
    Description

    Zambia: Fertilizer use, kg per hectare of arable land: The latest value from 2022 is 64.6 kg per hectare of arable land, an increase from 63.9 kg per hectare of arable land in 2021. In comparison, the world average is 133.2 kg per hectare of arable land, based on data from 182 countries. Historically, the average for Zambia from 1961 to 2022 is 28 kg per hectare of arable land. The minimum value, 3.3 kg per hectare of arable land, was reached in 1962 while the maximum of 79.8 kg per hectare of arable land was recorded in 2020.

  9. T

    Latvia Imports from Greece of Maps, Hydrographic or Similar Charts (Printed)...

    • tradingeconomics.com
    csv, excel, json, xml
    Updated Nov 8, 2023
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    TRADING ECONOMICS (2023). Latvia Imports from Greece of Maps, Hydrographic or Similar Charts (Printed) [Dataset]. https://tradingeconomics.com/latvia/imports/greece/maps-hydrographic-charts-atlases
    Explore at:
    csv, json, xml, excelAvailable download formats
    Dataset updated
    Nov 8, 2023
    Dataset authored and provided by
    TRADING ECONOMICS
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Jan 1, 1990 - Dec 31, 2025
    Area covered
    Latvia
    Description

    Latvia Imports from Greece of Maps, Hydrographic or Similar Charts (Printed) was US$423 during 2023, according to the United Nations COMTRADE database on international trade. Latvia Imports from Greece of Maps, Hydrographic or Similar Charts (Printed) - data, historical chart and statistics - was last updated on July of 2025.

  10. H

    Hungary Rural population, percent - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Feb 2, 2017
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    Globalen LLC (2017). Hungary Rural population, percent - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/Hungary/rural_population_percent/
    Explore at:
    csv, xml, excelAvailable download formats
    Dataset updated
    Feb 2, 2017
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Dec 31, 1960 - Dec 31, 2023
    Area covered
    Hungary
    Description

    Hungary: Rural population, percent of total population: The latest value from 2023 is 27.14 percent, a decline from 27.45 percent in 2022. In comparison, the world average is 38.64 percent, based on data from 196 countries. Historically, the average for Hungary from 1960 to 2023 is 35.05 percent. The minimum value, 27.14 percent, was reached in 2023 while the maximum of 44.09 percent was recorded in 1960.

  11. G

    Germany GDP, current U.S. dollars - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Jan 19, 2015
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    Globalen LLC (2015). Germany GDP, current U.S. dollars - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/germany/gdp_current_usd/
    Explore at:
    excel, xml, csvAvailable download formats
    Dataset updated
    Jan 19, 2015
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Dec 31, 1960 - Dec 31, 2024
    Area covered
    Germany
    Description

    Germany: Gross Domestic Product, billions of U.S. dollars: The latest value from 2024 is 4659.93 billion U.S. dollars, an increase from 4525.7 billion U.S. dollars in 2023. In comparison, the world average is 612.35 billion U.S. dollars, based on data from 176 countries. Historically, the average for Germany from 1960 to 2024 is 1924.88 billion U.S. dollars. The minimum value, 84.62 billion U.S. dollars, was reached in 1960 while the maximum of 4659.93 billion U.S. dollars was recorded in 2024.

  12. S

    Sudan Female labor force participation - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Apr 25, 2015
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    Globalen LLC (2015). Sudan Female labor force participation - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/Sudan/Female_labor_force_participation/
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    xml, csv, excelAvailable download formats
    Dataset updated
    Apr 25, 2015
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Dec 31, 1991 - Dec 31, 2023
    Area covered
    Sudan
    Description

    Sudan: Female labor force participation rate: The latest value from 2023 is 27.87 percent, a decline from 28.67 percent in 2022. In comparison, the world average is 51.07 percent, based on data from 178 countries. Historically, the average for Sudan from 1991 to 2023 is 28.26 percent. The minimum value, 24.5 percent, was reached in 1991 while the maximum of 29.11 percent was recorded in 1996.

  13. C

    Czechia Terms of trade - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Nov 29, 2016
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    Globalen LLC (2016). Czechia Terms of trade - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/Czech-Republic/Terms_of_trade/
    Explore at:
    excel, csv, xmlAvailable download formats
    Dataset updated
    Nov 29, 2016
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Dec 31, 2000 - Dec 31, 2021
    Area covered
    Czechia
    Description

    The Czechia: Terms of trade, base year = 2000: The latest value from 2021 is 98.85 percent, a decline from 100.8 percent in 2020. In comparison, the world average is 109.62 percent, based on data from 189 countries. Historically, the average for the Czechia from 2000 to 2021 is 100.86 percent. The minimum value, 97.3 percent, was reached in 2000 while the maximum of 105.8 percent was recorded in 2004.

  14. T

    Tunisia GDP, current U.S. dollars - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Feb 27, 2018
    + more versions
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    Globalen LLC (2018). Tunisia GDP, current U.S. dollars - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/Tunisia/GDP_current_USD/
    Explore at:
    excel, csv, xmlAvailable download formats
    Dataset updated
    Feb 27, 2018
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Dec 31, 1961 - Dec 31, 2024
    Area covered
    Tunisia
    Description

    Tunisia: Gross Domestic Product, billions of U.S. dollars: The latest value from 2024 is 53.41 billion U.S. dollars, an increase from 48.2 billion U.S. dollars in 2023. In comparison, the world average is 612.35 billion U.S. dollars, based on data from 176 countries. Historically, the average for Tunisia from 1961 to 2024 is 20.69 billion U.S. dollars. The minimum value, 0.87 billion U.S. dollars, was reached in 1961 while the maximum of 53.41 billion U.S. dollars was recorded in 2024.

  15. D

    Dominican Republic Hospital beds - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Jan 8, 2021
    + more versions
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    Globalen LLC (2021). Dominican Republic Hospital beds - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/Dominican-Republic/hospital_beds/
    Explore at:
    csv, xml, excelAvailable download formats
    Dataset updated
    Jan 8, 2021
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Area covered
    Dominican Republic
    Description

    Dominican Republic: Hospital beds: The latest value from is hospital beds, unavailable from hospital beds in . In comparison, the world average is 0 hospital beds, based on data from countries. Historically, the average for Dominican Republic from to is hospital beds. The minimum value, hospital beds, was reached in while the maximum of hospital beds was recorded in .

  16. U

    Ukraine Productivity, relative to the U.S. - data, chart |...

    • theglobaleconomy.com
    csv, excel, xml
    Updated Jul 11, 2020
    + more versions
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    Globalen LLC (2020). Ukraine Productivity, relative to the U.S. - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/Ukraine/productivity_relative_to_US/
    Explore at:
    xml, csv, excelAvailable download formats
    Dataset updated
    Jul 11, 2020
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Area covered
    Ukraine
    Description

    Ukraine: GDP per hour worked, index relative to the U.S.: The latest value from is index points, unavailable from index points in . In comparison, the world average is 0.00 index points, based on data from countries. Historically, the average for Ukraine from to is index points. The minimum value, index points, was reached in while the maximum of index points was recorded in .

  17. T

    Switzerland Imports from Iran of Maps, Hydrographic or Similar Charts...

    • tradingeconomics.com
    csv, excel, json, xml
    Updated Sep 14, 2023
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    TRADING ECONOMICS (2023). Switzerland Imports from Iran of Maps, Hydrographic or Similar Charts (Printed) [Dataset]. https://tradingeconomics.com/switzerland/imports/iran/maps-hydrographic-charts-atlases
    Explore at:
    excel, csv, xml, jsonAvailable download formats
    Dataset updated
    Sep 14, 2023
    Dataset authored and provided by
    TRADING ECONOMICS
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Jan 1, 1990 - Dec 31, 2025
    Area covered
    Switzerland
    Description

    Switzerland Imports from Iran of Maps, Hydrographic or Similar Charts (Printed) was US$685 during 2015, according to the United Nations COMTRADE database on international trade. Switzerland Imports from Iran of Maps, Hydrographic or Similar Charts (Printed) - data, historical chart and statistics - was last updated on July of 2025.

  18. U

    USA Hospital beds per 1,000 people - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Dec 3, 2024
    + more versions
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    Globalen LLC (2024). USA Hospital beds per 1,000 people - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/USA/hospital_beds_per_1000_people/
    Explore at:
    csv, excel, xmlAvailable download formats
    Dataset updated
    Dec 3, 2024
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Dec 31, 1960 - Dec 31, 2019
    Area covered
    United States
    Description

    The USA: Hospital beds per 1,000 people: The latest value from 2019 is 2.8 hospital beds, a decline from 2.83 hospital beds in 2018. In comparison, the world average is 4.53 hospital beds, based on data from 39 countries. Historically, the average for the USA from 1960 to 2019 is 4.73 hospital beds. The minimum value, 2.77 hospital beds, was reached in 2016 while the maximum of 9.18 hospital beds was recorded in 1960.

  19. T

    Thailand Exports of maps, hydrographic or similar charts (printed) to...

    • tradingeconomics.com
    csv, excel, json, xml
    Updated Jun 24, 2024
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    TRADING ECONOMICS (2024). Thailand Exports of maps, hydrographic or similar charts (printed) to Lithuania [Dataset]. https://tradingeconomics.com/thailand/exports/lithuania/maps-hydrographic-charts-atlases
    Explore at:
    xml, csv, excel, jsonAvailable download formats
    Dataset updated
    Jun 24, 2024
    Dataset authored and provided by
    TRADING ECONOMICS
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Jan 1, 1990 - Dec 31, 2025
    Area covered
    Thailand
    Description

    Thailand Exports of maps, hydrographic or similar charts (printed) to Lithuania was US$255 during 2020, according to the United Nations COMTRADE database on international trade. Thailand Exports of maps, hydrographic or similar charts (printed) to Lithuania - data, historical chart and statistics - was last updated on August of 2025.

  20. D

    Dominican Republic Percent children - data, chart | TheGlobalEconomy.com

    • theglobaleconomy.com
    csv, excel, xml
    Updated Jun 17, 2017
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    Globalen LLC (2017). Dominican Republic Percent children - data, chart | TheGlobalEconomy.com [Dataset]. www.theglobaleconomy.com/Dominican-Republic/percent_children/
    Explore at:
    csv, xml, excelAvailable download formats
    Dataset updated
    Jun 17, 2017
    Dataset authored and provided by
    Globalen LLC
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Dec 31, 1960 - Dec 31, 2023
    Area covered
    Dominican Republic
    Description

    Dominican Republic: Population ages 0-14, percent of total: The latest value from 2023 is 26.91 percent, a decline from 27.19 percent in 2022. In comparison, the world average is 26.10 percent, based on data from 196 countries. Historically, the average for Dominican Republic from 1960 to 2023 is 38.66 percent. The minimum value, 26.91 percent, was reached in 2023 while the maximum of 49.39 percent was recorded in 1965.

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Meng Wang; Jiaheng Zhang; Jun Liu; Wei Hu; Sen Wang; Xue Li; Wenqiang Liu (2023). PDD Graph: Bridging Electronic Medical Records and Biomedical Knowledge Graphs via Entity Linking [Dataset]. http://doi.org/10.6084/m9.figshare.5242138
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Data from: PDD Graph: Bridging Electronic Medical Records and Biomedical Knowledge Graphs via Entity Linking

Related Article
Explore at:
txtAvailable download formats
Dataset updated
May 31, 2023
Dataset provided by
Figsharehttp://figshare.com/
Authors
Meng Wang; Jiaheng Zhang; Jun Liu; Wei Hu; Sen Wang; Xue Li; Wenqiang Liu
License

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Description

Patient-drug-disease (PDD) Graph dataset, utilising Electronic medical records (EMRS) and biomedical Knowledge graphs. The novel framework to construct the PDD graph is described in the associated publication.PDD is an RDF graph consisting of PDD facts, where a PDD fact is represented by an RDF triple to indicate that a patient takes a drug or a patient is diagnosed with a disease. For instance, (pdd:274671, pdd:diagnosed, sepsis)Data files are in .nt N-Triple format, a line-based syntax for an RDF graph. These can be accessed via openly-available text edit software.diagnose_icd_information.nt - contains RDF triples mapping patients to diagnoses. For example:(pdd:18740, pdd:diagnosed, icd99592),where pdd:18740 is a patient entity, and icd99592 is the ICD-9 code of sepsis.drug_patients.nt- contains RDF triples mapping patients to drugs. For example:(pdd:18740, pdd:prescribed, aspirin),where pdd:18740 is a patient entity, and aspirin is the drug's name.Background:Electronic medical records contain multi-format electronic medical data that consist of an abundance of medical knowledge. Faced with patients' symptoms, experienced caregivers make the right medical decisions based on their professional knowledge, which accurately grasps relationships between symptoms, diagnoses and corresponding treatments. In the associated paper, we aim to capture these relationships by constructing a large and high-quality heterogenous graph linking patients, diseases, and drugs (PDD) in EMRs. Specifically, we propose a novel framework to extract important medical entities from MIMIC-III (Medical Information Mart for Intensive Care III) and automatically link them with the existing biomedical knowledge graphs, including ICD-9 ontology and DrugBank. The PDD graph presented in this paper is accessible on the Web via the SPARQL endpoint as well as in .nt format in this repository, and provides a pathway for medical discovery and applications, such as effective treatment recommendations.De-identificationIt is necessary to mention that MIMIC-III contains clinical information of patients. Although the protected health information was de-identifed, researchers who seek to use more clinical data should complete an on-line training course and then apply for the permission to download the complete MIMIC-III dataset: https://mimic.physionet.org/

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