This document describes a dataset that aggregates information about 135 data journals.
Data journals focus on the publication of data papers -- a specialized publication type describing datasets, their collection and reuse potential that is peer-reviewed, citable and indexed.
This dataset includes a comprehensive list of data journals that was compiled by aggregating existing sources, as well as an overview of these sources.

The list is continually updated on GitHub, where additional information on data journals (URLs of data journal homepages) is provided: https://github.com/MaxiKi/data-journals

General descriptionThis dataset contains some markers of Open Science in the publications of the Chemical Biology Consortium Sweden (CBCS) between 2010 and July 2023. The sample of CBCS publications during this period consists of 188 articles. Every publication was visited manually at its DOI URL to answer the following questions.1. Is the research article an Open Access publication?2. Does the research article have a Creative Common license or a similar license?3. Does the research article contain a data availability statement?4. Did the authors submit data of their study to a repository such as EMBL, Genbank, Protein Data Bank PDB, Cambridge Crystallographic Data Centre CCDC, Dryad or a similar repository?5. Does the research article contain supplementary data?6. Do the supplementary data have a persistent identifier that makes them citable as a defined research output?VariablesThe data were compiled in a Microsoft Excel 365 document that includes the following variables.1. DOI URL of research article2. Year of publication3. Research article published with Open Access4. License for research article5. Data availability statement in article6. Supplementary data added to article7. Persistent identifier for supplementary data8. Authors submitted data to NCBI or EMBL or PDB or Dryad or CCDCVisualizationParts of the data were visualized in two figures as bar diagrams using Microsoft Excel 365. The first figure displays the number of publications during a year, the number of publications that is published with open access and the number of publications that contain a data availability statement (Figure 1). The second figure shows the number of publication sper year and how many publications contain supplementary data. This figure also shows how many of the supplementary datasets have a persistent identifier (Figure 2).File formats and softwareThe file formats used in this dataset are:.csv (Text file).docx (Microsoft Word 365 file).jpg (JPEG image file).pdf/A (Portable Document Format for archiving).png (Portable Network Graphics image file).pptx (Microsoft Power Point 365 file).txt (Text file).xlsx (Microsoft Excel 365 file)All files can be opened with Microsoft Office 365 and work likely also with the older versions Office 2019 and 2016. MD5 checksumsHere is a list of all files of this dataset and of their MD5 checksums.1. Readme.txt (MD5: 795f171be340c13d78ba8608dafb3e76)2. Manifest.txt (MD5: 46787888019a87bb9d897effdf719b71)3. Materials_and_methods.docx (MD5: 0eedaebf5c88982896bd1e0fe57849c2),4. Materials_and_methods.pdf (MD5: d314bf2bdff866f827741d7a746f063b),5. Materials_and_methods.txt (MD5: 26e7319de89285fc5c1a503d0b01d08a),6. CBCS_publications_until_date_2023_07_05.xlsx (MD5: 532fec0bd177844ac0410b98de13ca7c),7. CBCS_publications_until_date_2023_07_05.csv (MD5: 2580410623f79959c488fdfefe8b4c7b),8. Data_from_CBCS_publications_until_date_2023_07_05_obtained_by_manual_collection.xlsx (MD5: 9c67dd84a6b56a45e1f50a28419930e5),9. Data_from_CBCS_publications_until_date_2023_07_05_obtained_by_manual_collection.csv (MD5: fb3ac69476bfc57a8adc734b4d48ea2b),10. Aggregated_data_from_CBCS_publications_until_2023_07_05.xlsx (MD5: 6b6cbf3b9617fa8960ff15834869f793),11. Aggregated_data_from_CBCS_publications_until_2023_07_05.csv (MD5: b2b8dd36ba86629ed455ae5ad2489d6e),12. Figure_1_CBCS_publications_until_2023_07_05_Open_Access_and_data_availablitiy_statement.xlsx (MD5: 9c0422cf1bbd63ac0709324cb128410e),13. Figure_1.pptx (MD5: 55a1d12b2a9a81dca4bb7f333002f7fe),14. Image_of_figure_1.jpg (MD5: 5179f69297fbbf2eaaf7b641784617d7),15. Image_of_figure_1.png (MD5: 8ec94efc07417d69115200529b359698),16. Figure_2_CBCS_publications_until_2023_07_05_supplementary_data_and_PID_for_supplementary_data.xlsx (MD5: f5f0d6e4218e390169c7409870227a0a),17. Figure_2.pptx (MD5: 0fd4c622dc0474549df88cf37d0e9d72),18. Image_of_figure_2.jpg (MD5: c6c68b63b7320597b239316a1c15e00d),19. Image_of_figure_2.png (MD5: 24413cc7d292f468bec0ac60cbaa7809)

Version: 5

Authors: Carlota Balsa-Sánchez, Vanesa Loureiro

Date of data collection: 2023/09/05

General description: The publication of datasets according to the FAIR principles, could be reached publishing a data paper (or software paper) in data journals or in academic standard journals. The excel and CSV file contains a list of academic journals that publish data papers and software papers. File list:

• data_articles_journal_list_v5.xlsx: full list of 140 academic journals in which data papers or/and software papers could be published
• data_articles_journal_list_v5.csv: full list of 140 academic journals in which data papers or/and software papers could be published

Relationship between files: both files have the same information. Two different formats are offered to improve reuse

Type of version of the dataset: final processed version

Versions of the files: 5th version - Information updated: number of journals, URL, document types associated to a specific journal.

Version: 4

Authors: Carlota Balsa-Sánchez, Vanesa Loureiro

Date of data collection: 2022/12/15

General description: The publication of datasets according to the FAIR principles, could be reached publishing a data paper (or software paper) in data journals or in academic standard journals. The excel and CSV file contains a list of academic journals that publish data papers and software papers. File list:

• data_articles_journal_list_v4.xlsx: full list of 140 academic journals in which data papers or/and software papers could be published
• data_articles_journal_list_v4.csv: full list of 140 academic journals in which data papers or/and software papers could be published

Relationship between files: both files have the same information. Two different formats are offered to improve reuse

Type of version of the dataset: final processed version

Versions of the files: 4th version - Information updated: number of journals, URL, document types associated to a specific journal, publishers normalization and simplification of document types - Information added : listed in the Directory of Open Access Journals (DOAJ), indexed in Web of Science (WOS) and quartile in Journal Citation Reports (JCR) and/or Scimago Journal and Country Rank (SJR), Scopus and Web of Science (WOS), Journal Master List.

Version: 3

Authors: Carlota Balsa-Sánchez, Vanesa Loureiro

Date of data collection: 2022/10/28

General description: The publication of datasets according to the FAIR principles, could be reached publishing a data paper (or software paper) in data journals or in academic standard journals. The excel and CSV file contains a list of academic journals that publish data papers and software papers. File list:

• data_articles_journal_list_v3.xlsx: full list of 124 academic journals in which data papers or/and software papers could be published
• data_articles_journal_list_3.csv: full list of 124 academic journals in which data papers or/and software papers could be published

Relationship between files: both files have the same information. Two different formats are offered to improve reuse

Type of version of the dataset: final processed version

Versions of the files: 3rd version - Information updated: number of journals, URL, document types associated to a specific journal, publishers normalization and simplification of document types - Information added : listed in the Directory of Open Access Journals (DOAJ), indexed in Web of Science (WOS) and quartile in Journal Citation Reports (JCR) and/or Scimago Journal and Country Rank (SJR).

Erratum - Data articles in journals Version 3:

Botanical Studies -- ISSN 1999-3110 -- JCR (JIF) Q2 Data -- ISSN 2306-5729 -- JCR (JIF) n/a Data in Brief -- ISSN 2352-3409 -- JCR (JIF) n/a

Version: 2

Author: Francisco Rubio, Universitat Politècnia de València.

Date of data collection: 2020/06/23

General description: The publication of datasets according to the FAIR principles, could be reached publishing a data paper (or software paper) in data journals or in academic standard journals. The excel and CSV file contains a list of academic journals that publish data papers and software papers. File list:

• data_articles_journal_list_v2.xlsx: full list of 56 academic journals in which data papers or/and software papers could be published
• data_articles_journal_list_v2.csv: full list of 56 academic journals in which data papers or/and software papers could be published

Relationship between files: both files have the same information. Two different formats are offered to improve reuse

Type of version of the dataset: final processed version

Versions of the files: 2nd version - Information updated: number of journals, URL, document types associated to a specific journal, publishers normalization and simplification of document types - Information added : listed in the Directory of Open Access Journals (DOAJ), indexed in Web of Science (WOS) and quartile in Scimago Journal and Country Rank (SJR)

Total size: 32 KB

Version 1: Description

This dataset contains a list of journals that publish data articles, code, software articles and database articles.

The search strategy in DOAJ and Ulrichsweb was the search for the word data in the title of the journals. Acknowledgements: Xaquín Lores Torres for his invaluable help in preparing this dataset.

This dataset contains an open and curated scholarly graph we built as a training and test set for data discovery, data connection, author disambiguation, and link prediction tasks. This graph represents the European Marine Science community included in the OpenAIRE Graph. The nodes of the graph we release represent publications, datasets, software, and authors respectively; edges interconnecting research products always have the publication as source, and the dataset/software as target. In addition, edges are labeled with semantics that outline whether the publication is referencing, citing, documenting, or supplementing the related outcome. To curate and enrich nodes metadata and edges semantics, we relied on the information extracted from the PDF of the publications and the datasets/software webpages respectively. We curated the authors so to remove duplicated nodes representing the same person. The resource we release counts 4,047 publications, 5,488 datasets, 22 software, 21,561 authors, and 9,692 edges connect publications to datasets/software. This graph is in the curated_MES folder. We provide this resource as: a property graph: we provide the dump that can be imported in neo4j 5 jsonl files containing publications, datasets, software, authors, and relationships respectively. Each line of a jsonl file contains a JSON object representing a node and contains the metadata of that node (or a relationship). We provide two additional scholarly graphs: The curated MES graph with the removed edges. During the curation we removed some edges since they were labeled with an inconsistent or imprecise semantics. This graph includes the same nodes and edges as the previous one, and, in addition, it contains the edges removed during the curation pipeline; these edges are marked as Removed. This graph is in the curated_MES_with_removed_semantics folder. The original MES community of OpenAIRE. It represents the MES community extracted from the OpenAIRE Research Graph. This graph has not been curated, and the metadata and semantics are those of the OpenAIRE Research Graph. This graph is in the original_MES_community folder.

This is the underlying dataset used for the country analysis regarding the percentage of papers in Dimensions and Web of Science (WoS), published between 2015 and 2019 that are open access (OA), regardless of mode of OA.A paper was assigned a country affiliation based on the affiliation of the first author of a paper, thus each paper is only counted once, regardless whether the paper had multiple coauthors.Each row represents the data for a country. A country only appears once (i.e., each row is unique).Column headings:iso_alpha_2 = the ISO alpha 2 country code of the countrycountry = the name of the country as stated either in Dimensions or WoS.world_bank_region_2021 = pub_wos = total number of papers (document type articles and reviews) indexed in WoS, published from 2015 to 2019oa_pers_wos = Percentage of pub_wos that are OApub_dim = total number of papers (document type journal articles) indexed in Dimensions, published from 2015 to 2019oa_pers_dim = Percentage of pub_dim that are OArelative_diff = the relative difference between oa_pers_dim and oa_pers_wos using the following equation: ((x-y))/((x+y) ), with x representing the percentage of papers for the country in the Dimensions dataset that are OA, and y representing the percentage of papers for the country in the WoS dataset that are OA. In cases of "N/A" in a cell, a division by 0 occurred.Data availabilityRestriction apply to both datasets used to generate the aggregate data. The Web of Science data is owned by Clarivate Analytics. To obtain the bibliometric data in the same manner as authors (i.e. by purchasing them), readers can contact Clarivate Analytics at the following URL: https://clarivate.com/webofsciencegroup/solutions/web-of-science/contact-us/. The Dimensions data is owned by Digital Science, which has a programme that provides no cost access to its data. It can be accessed at: https://dimensions.ai/data_access.

The xcel spreadsheet includes results of photochemical model simulations of regional haze that were used to develop the tables and figures included in the publication. Citation information for this dataset can be found in Data.gov's References section.

This dataset contains information from scientific publications written by authors who have published papers in the RecSys conference. It contains four files which have information extracted from scientific publications. The details of each file are explained below:i) all_authors.tsv: This file contains the details of authors who published research papers in the RecSys conference. The details include authors' identifier in various forms, such as number, orcid id, dblp url, dblp key and google scholar url, authors' first name, last name and their affiliation (where they work)ii) all_publications.tsv: This file contains the details of publications authored by the authors mentioned in the all_authors.tsv file (Please note the list of publications does not contain all the authored publications of the authors, refer to the publication for further details).The details include publications' identifier in different forms (such as number, dblp key, dblp url, dblp key, google scholar url), title, filtered title, published date, published conference and paper abstract.iii) selected_author_publications-information.tsv: This file consists of identifiers of authors and their publications. Here, we provide the information of selected authors and their publications used for our experiment.iv) selected_publication_citations-information.tsv: This file contains the information of the selected publications which consists of both citing and cited papers’ information used in our experiment. It consists of identifier of citing paper, identifier of cited paper, citation title, citation filtered title, the sentence before the citation is mentioned, citing sentence, the sentence after the citation is mentioned, citation position (section).Please note, it does not contain information of all the citations cited in the publications. For more detail, please refer to the paper.This dataset is for the use of research purposes only and if you use this dataset, please cite our paper "Capturing and exploiting citation knowledge for recommending recently published papers" due to be published in Web2Touch track 2020 (not yet published).

This dataset contains background data for a small study about how the recommendations for how to increase the FAIRness of research data are being adopted in scientific/scholarly communities. To get a rough indication of how large the group of Early Adopters of the FAIR Data Principles might be in Norway, I compared the number of unique authors of datasets published in 2019 with the number of unique authors of publications of research results in anthology chapters, articles and monographs (books) in the same year. As a use case, I chose my own university, UiT The Arctic University of Norway (UiT).

Data sharing is crucial to the advancement of science because it facilitates collaboration, transparency, reproducibility, criticism, and re-analysis. Publishers are well-positioned to promote sharing of research data by implementing data sharing policies. While there is an increasing trend toward requiring data sharing, not all journals mandate that data be shared at the time of publication. In this study, we extended previous work to analyze the data sharing policies of 447 journals across several scientific disciplines, including biology, clinical sciences, mathematics, physics, and social sciences. Our results showed that only a small percentage of journals require data sharing as a condition of publication, and that this varies across disciplines and Impact Factors. Both Impact Factors and discipline are associated with the presence of a data sharing policy. Our results suggest that journals with higher Impact Factors are more likely to have data sharing policies; use shared data in peer review; require deposit of specific data types into publicly available data banks; and refer to reproducibility as a rationale for sharing data. Biological science journals are more likely than social science and mathematics journals to require data sharing.

Data supporting the Master thesis "Monitoring von Open Data Praktiken - Herausforderungen beim Auffinden von Datenpublikationen am Beispiel der Publikationen von Forschenden der TU Dresden" (Monitoring open data practices - challenges in finding data publications using the example of publications by researchers at TU Dresden) - Katharina Zinke, Institut für Bibliotheks- und Informationswissenschaften, Humboldt-Universität Berlin, 2023

This ZIP-File contains the data the thesis is based on, interim exports of the results and the R script with all pre-processing, data merging and analyses carried out. The documentation of the additional, explorative analysis is also available. The actual PDFs and text files of the scientific papers used are not included as they are published open access.

The folder structure is shown below with the file names and a brief description of the contents of each file. For details concerning the analyses approach, please refer to the master's thesis (publication following soon).

## Data sources

Folder 01_SourceData/

- PLOS-Dataset_v2_Mar23.csv (PLOS-OSI dataset)

- ScopusSearch_ExportResults.csv (export of Scopus search results from Scopus)

- ScopusSearch_ExportResults.ris (export of Scopus search results from Scopus)

- Zotero_Export_ScopusSearch.csv (export of the file names and DOIs of the Scopus search results from Zotero)

## Automatic classification

Folder 02_AutomaticClassification/

- (NOT INCLUDED) PDFs folder (Folder for PDFs of all publications identified by the Scopus search, named AuthorLastName_Year_PublicationTitle_Title)

- (NOT INCLUDED) PDFs_to_text folder (Folder for all texts extracted from the PDFs by ODDPub, named AuthorLastName_Year_PublicationTitle_Title)

- PLOS_ScopusSearch_matched.csv (merge of the Scopus search results with the PLOS_OSI dataset for the files contained in both)

- oddpub_results_wDOIs.csv (results file of the ODDPub classification)

- PLOS_ODDPub.csv (merge of the results file of the ODDPub classification with the PLOS-OSI dataset for the publications contained in both)

## Manual coding

Folder 03_ManualCheck/

- CodeSheet_ManualCheck.txt (Code sheet with descriptions of the variables for manual coding)

- ManualCheck_2023-06-08.csv (Manual coding results file)

- PLOS_ODDPub_Manual.csv (Merge of the results file of the ODDPub and PLOS-OSI classification with the results file of the manual coding)

## Explorative analysis for the discoverability of open data

Folder04_FurtherAnalyses

Proof_of_of_Concept_Open_Data_Monitoring.pdf (Description of the explorative analysis of the discoverability of open data publications using the example of a researcher) - in German

## R-Script

Analyses_MA_OpenDataMonitoring.R (R-Script for preparing, merging and analyzing the data and for performing the ODDPub algorithm)

This data comes from the Principal Investigators Survey of 2017-2018. It provides annual results and performance indicators for Canadian Space Agency funded investments in Research and Development, and Science and Technology. The goal of this survey is to evaluate and demonstrate the impact of this funding for space research. Extracts of these results are published in the Departmental Result Report.

Provide public access using keywords to find technical and scientific research information contained in EPA Publications.

This dataset collates details of publications produced by APHA staff during 2008. This is not a fully comprehensive list, but comprises the complete record of publications as held by APHA's Library service. APHA staff are identified by capital letters in the 'Author' column, and are included in the Library's records where they have made any acknowledged contribution to a publication, either as First Author or a Contributor. The available fields in this dataset are: Year (of publication); Author; Title (of article); Citation (journal of publication); Type (of journal); Collaborators; Subject and Keyword fields (identified by Librarians); URL (to article location where available online); Notes. Please Note: not all journals are accessible to the public without subscription. These links are included to facilitate access and to demonstrate the location of these publications where relevant.

This article describes the novel open source tools for open data publication in open access journal workflows. This comprises a plugin for Open Journal Systems that supports a data submission, citation, review, and publication workflow; and an extension to the Dataverse system that provides a standard deposit API. We describe the function and design of these tools, provide examples of their use, and summarize their initial reception. We conclude by discussing future plans and potential impact.

Data enclosed in a single zipped folder:

A) DASH-V2 : Data files for final published analysis (J. Informetrics, 2019)

File A1: PubData_DOI_141986_Nc_0_2019.dta

File A2: PubData_DOI_141986_Nc_0_2019_DOFILE

B) DASH-V1 : Data files for preprint version (https://ssrn.com/abstract=2901272)

File B1: PubData_Obs_102741_Nc_10_No2015_CitationsAnalysis.dta

File B2: PubData_Obs_128734_Nc_10_AcceptanceTimeAnalysis.dta

File B3: STATA13_DOFILE

C) Data description common to all .dta files, which contain parsed and merged PLOS ONE and Web of Science metadata:

File A3: UC-DASH_DataDescription_Petersen_V2.pdf

File B4: UC-DASH_DataDescription_Petersen_V1.pdf

Dataset related to Hübner (2020) Earth science and biodiversity journals can improve support for data publication. Preprint: https://doi.org/10.23689/fidgeo-3818

This study reviews research data policies and author instructions of 31 journals from the Earth sciences and from biodiversity that are published by German learned societies or research institutions. The statements on data publishing of the journal´s data policies / author guidelines were matched to 14 pre-defined features of journal research data policies from Hrynaszkiewicz, I. et al. (2020) Developing a Research Data Policy Framework for All Journals and Publishers. Data Science Journal, 19: 5, pp. 1–15. https://doi.org/10.5334/dsj-2020-005.

To gain the greatest benefit from FAIR research data for the scientific community, it should be published whenever possible. Not only can the data generate new insights and approaches like machine learning, but also increase the visibility of researchers. But how can data be published and what should be considered when selecting the right medium? In this video, we provide an overview of the options for and benefits of publishing your research data to guide you in the journey to open science.

In order to analyse specific features of data papers, we established a representative sample of data journals, based on lists from the European FOSTER Plus project , the German wiki forschungsdaten.org hosted by the University of Konstanz and two French research organizations.The complete list consists of 82 data journals, i.e. journals which publish data papers. They represent less than 0,5% of academic and scholarly journals. For each of these 82 data journals, we gathered information about the discipline, the global business model, the publisher, peer reviewing etc. The analysis is partly based on data from ProQuest’s Ulrichsweb database, enriched and completed by information available on the journals’ home pages.One part of the data journals are presented as “pure” data journals stricto sensu , i.e. journals which publish exclusively or mainly data papers. We identified 28 journals of this category (34%). For each journal, we assessed through direct search on the journals’ homepages (information about the journal, author’s guidelines etc.) the use of identifiers and metadata, the mode of selection and the business model, and we assessed different parameters of the data papers themselves, such as length, structure, linking etc.The results of this analysis are compared with other research journals (“mixed” data journals) which publish data papers along with regular research articles, in order to identify possible differences between both journal categories, on the level of data papers as well as on the level of the regular research papers. Moreover, the results are discussed against concepts of knowledge organization.

Datasets for publication: 'Measuring the excellence contribution at the journal level: An alternative to Garfield's Impact Factor'.

Overview. Overview of the number of journals, publications, excellent publications and multidisciplinarity for each category considered.

ALL. Journal indicators for all the document types by JCR category.

ALL_JCR. Journal indicators for all the document types by JCR category (only journals indexed in the JCR category are taken into account).

AR. Journal indicators for only articles and reviews by JCR category.

AR_JCR. Journal indicators for only articles and reviews by JCR category (only journals indexed in the JCR category are taken into account).

This dataset is about book subjects. It has 3 rows and is filtered where the books is Data collection : key debates and methods in social research. It features 10 columns including number of authors, number of books, earliest publication date, and latest publication date.