CC0 1.0 Universal Public Domain Dedicationhttps://creativecommons.org/publicdomain/zero/1.0/
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Time-Series Matrix (TSMx): A visualization tool for plotting multiscale temporal trends TSMx is an R script that was developed to facilitate multi-temporal-scale visualizations of time-series data. The script requires only a two-column CSV of years and values to plot the slope of the linear regression line for all possible year combinations from the supplied temporal range. The outputs include a time-series matrix showing slope direction based on the linear regression, slope values plotted with colors indicating magnitude, and results of a Mann-Kendall test. The start year is indicated on the y-axis and the end year is indicated on the x-axis. In the example below, the cell in the top-right corner is the direction of the slope for the temporal range 2001–2019. The red line corresponds with the temporal range 2010–2019 and an arrow is drawn from the cell that represents that range. One cell is highlighted with a black border to demonstrate how to read the chart—that cell represents the slope for the temporal range 2004–2014. This publication entry also includes an excel template that produces the same visualizations without a need to interact with any code, though minor modifications will need to be made to accommodate year ranges other than what is provided. TSMx for R was developed by Georgios Boumis; TSMx was originally conceptualized and created by Brad G. Peter in Microsoft Excel. Please refer to the associated publication: Peter, B.G., Messina, J.P., Breeze, V., Fung, C.Y., Kapoor, A. and Fan, P., 2024. Perspectives on modifiable spatiotemporal unit problems in remote sensing of agriculture: evaluating rice production in Vietnam and tools for analysis. Frontiers in Remote Sensing, 5, p.1042624. https://www.frontiersin.org/journals/remote-sensing/articles/10.3389/frsen.2024.1042624 TSMx sample chart from the supplied Excel template. Data represent the productivity of rice agriculture in Vietnam as measured via EVI (enhanced vegetation index) from the NASA MODIS data product (MOD13Q1.V006). TSMx R script: # import packages library(dplyr) library(readr) library(ggplot2) library(tibble) library(tidyr) library(forcats) library(Kendall) options(warn = -1) # disable warnings # read data (.csv file with "Year" and "Value" columns) data <- read_csv("EVI.csv") # prepare row/column names for output matrices years <- data %>% pull("Year") r.names <- years[-length(years)] c.names <- years[-1] years <- years[-length(years)] # initialize output matrices sign.matrix <- matrix(data = NA, nrow = length(years), ncol = length(years)) pval.matrix <- matrix(data = NA, nrow = length(years), ncol = length(years)) slope.matrix <- matrix(data = NA, nrow = length(years), ncol = length(years)) # function to return remaining years given a start year getRemain <- function(start.year) { years <- data %>% pull("Year") start.ind <- which(data[["Year"]] == start.year) + 1 remain <- years[start.ind:length(years)] return (remain) } # function to subset data for a start/end year combination splitData <- function(end.year, start.year) { keep <- which(data[['Year']] >= start.year & data[['Year']] <= end.year) batch <- data[keep,] return(batch) } # function to fit linear regression and return slope direction fitReg <- function(batch) { trend <- lm(Value ~ Year, data = batch) slope <- coefficients(trend)[[2]] return(sign(slope)) } # function to fit linear regression and return slope magnitude fitRegv2 <- function(batch) { trend <- lm(Value ~ Year, data = batch) slope <- coefficients(trend)[[2]] return(slope) } # function to implement Mann-Kendall (MK) trend test and return significance # the test is implemented only for n>=8 getMann <- function(batch) { if (nrow(batch) >= 8) { mk <- MannKendall(batch[['Value']]) pval <- mk[['sl']] } else { pval <- NA } return(pval) } # function to return slope direction for all combinations given a start year getSign <- function(start.year) { remaining <- getRemain(start.year) combs <- lapply(remaining, splitData, start.year = start.year) signs <- lapply(combs, fitReg) return(signs) } # function to return MK significance for all combinations given a start year getPval <- function(start.year) { remaining <- getRemain(start.year) combs <- lapply(remaining, splitData, start.year = start.year) pvals <- lapply(combs, getMann) return(pvals) } # function to return slope magnitude for all combinations given a start year getMagn <- function(start.year) { remaining <- getRemain(start.year) combs <- lapply(remaining, splitData, start.year = start.year) magns <- lapply(combs, fitRegv2) return(magns) } # retrieve slope direction, MK significance, and slope magnitude signs <- lapply(years, getSign) pvals <- lapply(years, getPval) magns <- lapply(years, getMagn) # fill-in output matrices dimension <- nrow(sign.matrix) for (i in 1:dimension) { sign.matrix[i, i:dimension] <- unlist(signs[i]) pval.matrix[i, i:dimension] <- unlist(pvals[i]) slope.matrix[i, i:dimension] <- unlist(magns[i]) } sign.matrix <-...
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
This bar chart displays book series by book series using the aggregation count. The data is about book series.
All 311 Service Requests from 2010 to present. This information is automatically updated daily.
Click here to download data from 2011 - https://data.cityofnewyork.us/dataset/311-Service-Requests-From-2011/fpz8-jqf4
Click here to download data from 2012 - https://data.cityofnewyork.us/dataset/311-Service-Requests-From-2012/as38-8eb5
Click here to download data from 2013 - https://data.cityofnewyork.us/dataset/311-Service-Requests-From-2013/hybb-af8n
Click here to download data from 2014 - https://data.cityofnewyork.us/dataset/311-Service-Requests-From-2014/vtzg-7562
Click here to download data from 2015 - https://data.cityofnewyork.us/dataset/311-Service-Requests-From-2015/57g5-etyj
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
This horizontal bar chart displays number of books by book series using the aggregation sum. The data is about book series.
U.S. Government Workshttps://www.usa.gov/government-works
License information was derived automatically
Traffic counts data for NJ DOT. The data sets includes short term counts (48 hours volumes) and continuous data.
Matplotlib is a tremendous visualization library in Python for 2D plots of arrays. Matplotlib may be a multi-platform data visualization library built on NumPy arrays and designed to figure with the broader SciPy stack. It had been introduced by John Hunter within the year 2002.
A bar plot or bar graph may be a graph that represents the category of knowledge with rectangular bars with lengths and heights that’s proportional to the values which they represent. The bar plots are often plotted horizontally or vertically.
A bar chart is a great way to compare categorical data across one or two dimensions. More often than not, it’s more interesting to compare values across two dimensions and for that, a grouped bar chart is needed.
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
Figures in scientific publications are critically important because they often show the data supporting key findings. Our systematic review of research articles published in top physiology journals (n = 703) suggests that, as scientists, we urgently need to change our practices for presenting continuous data in small sample size studies. Papers rarely included scatterplots, box plots, and histograms that allow readers to critically evaluate continuous data. Most papers presented continuous data in bar and line graphs. This is problematic, as many different data distributions can lead to the same bar or line graph. The full data may suggest different conclusions from the summary statistics. We recommend training investigators in data presentation, encouraging a more complete presentation of data, and changing journal editorial policies. Investigators can quickly make univariate scatterplots for small sample size studies using our Excel templates.
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
Note: none of the data sets published here contain actual data, they are for testing purposes only.
This data repository contains graph datasets, where each graph is represented by two CSV files: one for node information and another for edge details. To link the files to the same graph, their names include a common identifier based on the number of nodes. For example:
dataset_30_nodes_interactions.csv
:contains 30 rows (nodes).dataset_30_edges_interactions.csv
: contains 47 rows (edges).dataset_30
refers to the same graph.Each dataset contains the following columns:
Name of the Column | Type | Description |
UniProt ID | string | protein identification |
label | string | protein label (type of node) |
properties | string | a dictionary containing properties related to the protein. |
Each dataset contains the following columns:
Name of the Column | Type | Description |
Relationship ID | string | relationship identification |
Source ID | string | identification of the source protein in the relationship |
Target ID | string | identification of the target protein in the relationship |
label | string | relationship label (type of relationship) |
properties | string | a dictionary containing properties related to the relationship. |
Graph | Number of Nodes | Number of Edges | Sparse graph |
dataset_30* |
30 | 47 |
Y |
dataset_60* |
60 |
181 |
Y |
dataset_120* |
120 |
689 |
Y |
dataset_240* |
240 |
2819 |
Y |
dataset_300* |
300 |
4658 |
Y |
dataset_600* |
600 |
18004 |
Y |
dataset_1200* |
1200 |
71785 |
Y |
dataset_2400* |
2400 |
288600 |
Y |
dataset_3000* |
3000 |
449727 |
Y |
dataset_6000* |
6000 |
1799413 |
Y |
dataset_12000* |
12000 |
7199863 |
Y |
dataset_24000* |
24000 |
28792361 |
Y |
This repository include two (2) additional tiny graph datasets to experiment before dealing with larger datasets.
Each dataset contains the following columns:
Name of the Column | Type | Description |
ID | string | node identification |
label | string | node label (type of node) |
properties | string | a dictionary containing properties related to the node. |
Each dataset contains the following columns:
Name of the Column | Type | Description |
ID | string | relationship identification |
source | string | identification of the source node in the relationship |
target | string | identification of the target node in the relationship |
label | string | relationship label (type of relationship) |
properties | string | a dictionary containing properties related to the relationship. |
Graph | Number of Nodes | Number of Edges | Sparse graph |
dataset_dummy* | 3 | 6 | N |
dataset_dummy2* | 3 | 6 | N |
U.S. Government Workshttps://www.usa.gov/government-works
License information was derived automatically
Traffic counts data for NJ DOT. The data sets includes short term counts (48 hours volumes) and continuous data.
These data are based on the latest Veteran Population Projection Model, VetPop2020, provided by the National Center for Veterans Statistics and Analysis, published in 2023.
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
confirmation bias can cause people to overweigh information that confirms their beliefs
This dataset provides data showing the number of vehicles (including cars, buses, trucks and motorcycles) that pass through each of the bridges and tunnels operated by the MTA each hour of the day. The data is updated weekly.
U.S. Government Workshttps://www.usa.gov/government-works
License information was derived automatically
The County of San Mateo subscribes to Nextdoor, a social networking site based on where participants live: https://nextdoor.com/. This data shows participation in Nextdoor by area, posts, categories and date. No post content is shared in this dataset.
Open Database License (ODbL) v1.0https://www.opendatacommons.org/licenses/odbl/1.0/
License information was derived automatically
Emergency Medical Service ambulance dispatch incidents in Marin County, CA, for the period beginning March 1, 2013 through June 30, 2017. Data is updated quarterly. Data includes time stamps of events for each dispatch, nature of injury, and location of injury. Data also includes geocoding of most incident locations, however, specific street address locations are "obfuscated" and are generally shown within a block and are not, therefore, exact locations. Geocoding results are also based on the quality of the address information provided, and should therefore not be considered 100% accurate.
Some of the data may be interpreted incorrectly without adequate knowledge of the clinical context. Please contact EMS@marincounty.org if you have any questions about the interpretation of fields in this dataset.
https://data.gov.tw/licensehttps://data.gov.tw/license
This document is a core sample (GSI-01A) diagram extracted by the Central Geological Survey of the Ministry of Economic Affairs in 2004 at the north slope of Turtle Island, Yilan County. The well was drilled to a depth of 270 meters to understand the local underground geological conditions. As the area is located in the volcanic region of northern Taiwan, geological drilling can help to understand the surface to subsurface geological conditions and assist in assessing the distribution of volcanic geological formations.
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
This horizontal bar chart displays book series by latest publication date using the aggregation count. The data is about book series.
This series shows collections of the cigarette and tobacco taxes, broken down by type of tobacco product. The series also shows how the tax on cigarettes is allocated among the various special funds.
This dataset includes correlations and serves as a proof of concept for future GOPI data uploads.
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
Prepared for second bar chart in relevant Figure (12b) of Marine chapter of State of the environment report. Data compiled by CSIRO.
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
This bar chart displays number of authors (people) by book series using the aggregation sum. The data is about book series.
CC0 1.0 Universal Public Domain Dedicationhttps://creativecommons.org/publicdomain/zero/1.0/
License information was derived automatically
Time-Series Matrix (TSMx): A visualization tool for plotting multiscale temporal trends TSMx is an R script that was developed to facilitate multi-temporal-scale visualizations of time-series data. The script requires only a two-column CSV of years and values to plot the slope of the linear regression line for all possible year combinations from the supplied temporal range. The outputs include a time-series matrix showing slope direction based on the linear regression, slope values plotted with colors indicating magnitude, and results of a Mann-Kendall test. The start year is indicated on the y-axis and the end year is indicated on the x-axis. In the example below, the cell in the top-right corner is the direction of the slope for the temporal range 2001–2019. The red line corresponds with the temporal range 2010–2019 and an arrow is drawn from the cell that represents that range. One cell is highlighted with a black border to demonstrate how to read the chart—that cell represents the slope for the temporal range 2004–2014. This publication entry also includes an excel template that produces the same visualizations without a need to interact with any code, though minor modifications will need to be made to accommodate year ranges other than what is provided. TSMx for R was developed by Georgios Boumis; TSMx was originally conceptualized and created by Brad G. Peter in Microsoft Excel. Please refer to the associated publication: Peter, B.G., Messina, J.P., Breeze, V., Fung, C.Y., Kapoor, A. and Fan, P., 2024. Perspectives on modifiable spatiotemporal unit problems in remote sensing of agriculture: evaluating rice production in Vietnam and tools for analysis. Frontiers in Remote Sensing, 5, p.1042624. https://www.frontiersin.org/journals/remote-sensing/articles/10.3389/frsen.2024.1042624 TSMx sample chart from the supplied Excel template. Data represent the productivity of rice agriculture in Vietnam as measured via EVI (enhanced vegetation index) from the NASA MODIS data product (MOD13Q1.V006). TSMx R script: # import packages library(dplyr) library(readr) library(ggplot2) library(tibble) library(tidyr) library(forcats) library(Kendall) options(warn = -1) # disable warnings # read data (.csv file with "Year" and "Value" columns) data <- read_csv("EVI.csv") # prepare row/column names for output matrices years <- data %>% pull("Year") r.names <- years[-length(years)] c.names <- years[-1] years <- years[-length(years)] # initialize output matrices sign.matrix <- matrix(data = NA, nrow = length(years), ncol = length(years)) pval.matrix <- matrix(data = NA, nrow = length(years), ncol = length(years)) slope.matrix <- matrix(data = NA, nrow = length(years), ncol = length(years)) # function to return remaining years given a start year getRemain <- function(start.year) { years <- data %>% pull("Year") start.ind <- which(data[["Year"]] == start.year) + 1 remain <- years[start.ind:length(years)] return (remain) } # function to subset data for a start/end year combination splitData <- function(end.year, start.year) { keep <- which(data[['Year']] >= start.year & data[['Year']] <= end.year) batch <- data[keep,] return(batch) } # function to fit linear regression and return slope direction fitReg <- function(batch) { trend <- lm(Value ~ Year, data = batch) slope <- coefficients(trend)[[2]] return(sign(slope)) } # function to fit linear regression and return slope magnitude fitRegv2 <- function(batch) { trend <- lm(Value ~ Year, data = batch) slope <- coefficients(trend)[[2]] return(slope) } # function to implement Mann-Kendall (MK) trend test and return significance # the test is implemented only for n>=8 getMann <- function(batch) { if (nrow(batch) >= 8) { mk <- MannKendall(batch[['Value']]) pval <- mk[['sl']] } else { pval <- NA } return(pval) } # function to return slope direction for all combinations given a start year getSign <- function(start.year) { remaining <- getRemain(start.year) combs <- lapply(remaining, splitData, start.year = start.year) signs <- lapply(combs, fitReg) return(signs) } # function to return MK significance for all combinations given a start year getPval <- function(start.year) { remaining <- getRemain(start.year) combs <- lapply(remaining, splitData, start.year = start.year) pvals <- lapply(combs, getMann) return(pvals) } # function to return slope magnitude for all combinations given a start year getMagn <- function(start.year) { remaining <- getRemain(start.year) combs <- lapply(remaining, splitData, start.year = start.year) magns <- lapply(combs, fitRegv2) return(magns) } # retrieve slope direction, MK significance, and slope magnitude signs <- lapply(years, getSign) pvals <- lapply(years, getPval) magns <- lapply(years, getMagn) # fill-in output matrices dimension <- nrow(sign.matrix) for (i in 1:dimension) { sign.matrix[i, i:dimension] <- unlist(signs[i]) pval.matrix[i, i:dimension] <- unlist(pvals[i]) slope.matrix[i, i:dimension] <- unlist(magns[i]) } sign.matrix <-...