100+ datasets found
  1. Dataset_Python_Question_Answer

    • kaggle.com
    zip
    Updated Mar 29, 2024
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    Chinmaya (2024). Dataset_Python_Question_Answer [Dataset]. https://www.kaggle.com/datasets/chinmayadatt/dataset-python-question-answer
    Explore at:
    zip(189137 bytes)Available download formats
    Dataset updated
    Mar 29, 2024
    Authors
    Chinmaya
    License

    Attribution-NonCommercial-ShareAlike 3.0 (CC BY-NC-SA 3.0)https://creativecommons.org/licenses/by-nc-sa/3.0/
    License information was derived automatically

    Description

    This dataset is about Python programming. Question and answers are generated using Gemma. There are more than four hundred questions and their corresponding answers about Python programming.

    Questions are ranging from concepts like data-types, variables and keywords to regular-expression and threading.

    I have used this dataset here

    The code used for dataset generated is available here

  2. All Seaborn Built-in Datasets 📊✨

    • kaggle.com
    zip
    Updated Aug 27, 2024
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    Abdelrahman Mohamed (2024). All Seaborn Built-in Datasets 📊✨ [Dataset]. https://www.kaggle.com/datasets/abdoomoh/all-seaborn-built-in-datasets
    Explore at:
    zip(1383218 bytes)Available download formats
    Dataset updated
    Aug 27, 2024
    Authors
    Abdelrahman Mohamed
    License

    Apache License, v2.0https://www.apache.org/licenses/LICENSE-2.0
    License information was derived automatically

    Description

    Description: - This dataset includes all 22 built-in datasets from the Seaborn library, a widely used Python data visualization tool. Seaborn's built-in datasets are essential resources for anyone interested in practicing data analysis, visualization, and machine learning. They span a wide range of topics, from classic datasets like the Iris flower classification to real-world data such as Titanic survival records and diamond characteristics.

    • Included Datasets:
      • Anagrams: Analysis of word anagram patterns.
      • Anscombe: Anscombe's quartet demonstrating the importance of data visualization.
      • Attention: Data on attention span variations in different scenarios.
      • Brain Networks: Connectivity data within brain networks.
      • Car Crashes: US car crash statistics.
      • Diamonds: Data on diamond properties including price, cut, and clarity.
      • Dots: Randomly generated data for scatter plot visualization.
      • Dow Jones: Historical records of the Dow Jones Industrial Average.
      • Exercise: The relationship between exercise and health metrics.
      • Flights: Monthly passenger numbers on flights.
      • FMRI: Functional MRI data capturing brain activity.
      • Geyser: Eruption times of the Old Faithful geyser.
      • Glue: Strength of glue under different conditions.
      • Health Expenditure: Health expenditure statistics across countries.
      • Iris: Famous dataset for classifying Iris species.
      • MPG: Miles per gallon for various vehicles.
      • Penguins: Data on penguin species and their features.
      • Planets: Characteristics of discovered exoplanets.
      • Sea Ice: Measurements of sea ice extent.
      • Taxis: Taxi trips data in a city.
      • Tips: Tipping data collected from a restaurant.
      • Titanic: Survival data from the Titanic disaster.

    This complete collection serves as an excellent starting point for anyone looking to improve their data science skills, offering a wide array of datasets suitable for both beginners and advanced users.

  3. h

    python-code-dataset-500k

    • huggingface.co
    Updated Jan 22, 2024
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    James (2024). python-code-dataset-500k [Dataset]. https://huggingface.co/datasets/jtatman/python-code-dataset-500k
    Explore at:
    CroissantCroissant is a format for machine-learning datasets. Learn more about this at mlcommons.org/croissant.
    Dataset updated
    Jan 22, 2024
    Authors
    James
    License

    MIT Licensehttps://opensource.org/licenses/MIT
    License information was derived automatically

    Description

    Attention: This dataset is a summary and reformat pulled from github code.

    You should make your own assumptions based on this. In fact, there is another dataset I formed through parsing that addresses several points:

    out of 500k python related items, most of them are python-ish, not pythonic the majority of the items here contain excessive licensing inclusion of original code the items here are sometimes not even python but have references There's a whole lot of gpl summaries… See the full description on the dataset page: https://huggingface.co/datasets/jtatman/python-code-dataset-500k.

  4. Ecommerce Dataset for Data Analysis

    • kaggle.com
    zip
    Updated Sep 19, 2024
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    Shrishti Manja (2024). Ecommerce Dataset for Data Analysis [Dataset]. https://www.kaggle.com/datasets/shrishtimanja/ecommerce-dataset-for-data-analysis/code
    Explore at:
    zip(2028853 bytes)Available download formats
    Dataset updated
    Sep 19, 2024
    Authors
    Shrishti Manja
    Description

    This dataset contains 55,000 entries of synthetic customer transactions, generated using Python's Faker library. The goal behind creating this dataset was to provide a resource for learners like myself to explore, analyze, and apply various data analysis techniques in a context that closely mimics real-world data.

    About the Dataset: - CID (Customer ID): A unique identifier for each customer. - TID (Transaction ID): A unique identifier for each transaction. - Gender: The gender of the customer, categorized as Male or Female. - Age Group: Age group of the customer, divided into several ranges. - Purchase Date: The timestamp of when the transaction took place. - Product Category: The category of the product purchased, such as Electronics, Apparel, etc. - Discount Availed: Indicates whether the customer availed any discount (Yes/No). - Discount Name: Name of the discount applied (e.g., FESTIVE50). - Discount Amount (INR): The amount of discount availed by the customer. - Gross Amount: The total amount before applying any discount. - Net Amount: The final amount after applying the discount. - Purchase Method: The payment method used (e.g., Credit Card, Debit Card, etc.). - Location: The city where the purchase took place.

    Use Cases: 1. Exploratory Data Analysis (EDA): This dataset is ideal for conducting EDA, allowing users to practice techniques such as summary statistics, visualizations, and identifying patterns within the data. 2. Data Preprocessing and Cleaning: Learners can work on handling missing data, encoding categorical variables, and normalizing numerical values to prepare the dataset for analysis. 3. Data Visualization: Use tools like Python’s Matplotlib, Seaborn, or Power BI to visualize purchasing trends, customer demographics, or the impact of discounts on purchase amounts. 4. Machine Learning Applications: After applying feature engineering, this dataset is suitable for supervised learning models, such as predicting whether a customer will avail a discount or forecasting purchase amounts based on the input features.

    This dataset provides an excellent sandbox for honing skills in data analysis, machine learning, and visualization in a structured but flexible manner.

    This is not a real dataset. This dataset was generated using Python's Faker library for the sole purpose of learning

  5. Data from: Code4ML: a Large-scale Dataset of annotated Machine Learning Code...

    • zenodo.org
    csv
    Updated Sep 15, 2023
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    Anonymous authors; Anonymous authors (2023). Code4ML: a Large-scale Dataset of annotated Machine Learning Code [Dataset]. http://doi.org/10.5281/zenodo.6607065
    Explore at:
    csvAvailable download formats
    Dataset updated
    Sep 15, 2023
    Dataset provided by
    Zenodohttp://zenodo.org/
    Authors
    Anonymous authors; Anonymous authors
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    We present Code4ML: a Large-scale Dataset of annotated Machine Learning Code, a corpus of Python code snippets, competition summaries, and data descriptions from Kaggle.

    The data is organized in a table structure. Code4ML includes several main objects: competitions information, raw code blocks collected form Kaggle and manually marked up snippets. Each table has a .csv format.

    Each competition has the text description and metadata, reflecting competition and used dataset characteristics as well as evaluation metrics (competitions.csv). The corresponding datasets can be loaded using Kaggle API and data sources.

    The code blocks themselves and their metadata are collected to the data frames concerning the publishing year of the initial kernels. The current version of the corpus includes two code blocks files: snippets from kernels up to the 2020 year (сode_blocks_upto_20.csv) and those from the 2021 year (сode_blocks_21.csv) with corresponding metadata. The corpus consists of 2 743 615 ML code blocks collected from 107 524 Jupyter notebooks.

    Marked up code blocks have the following metadata: anonymized id, the format of the used data (for example, table or audio), the id of the semantic type, a flag for the code errors, the estimated relevance to the semantic class (from 1 to 5), the id of the parent notebook, and the name of the competition. The current version of the corpus has ~12 000 labeled snippets (markup_data_20220415.csv).

    As marked up code blocks data contains the numeric id of the code block semantic type, we also provide a mapping from this number to semantic type and subclass (actual_graph_2022-06-01.csv).

    The dataset can help solve various problems, including code synthesis from a prompt in natural language, code autocompletion, and semantic code classification.

  6. Datasets for manuscript "A data engineering framework for chemical flow...

    • catalog.data.gov
    • gimi9.com
    Updated Nov 7, 2021
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    U.S. EPA Office of Research and Development (ORD) (2021). Datasets for manuscript "A data engineering framework for chemical flow analysis of industrial pollution abatement operations" [Dataset]. https://catalog.data.gov/dataset/datasets-for-manuscript-a-data-engineering-framework-for-chemical-flow-analysis-of-industr
    Explore at:
    Dataset updated
    Nov 7, 2021
    Dataset provided by
    United States Environmental Protection Agencyhttp://www.epa.gov/
    Description

    The EPA GitHub repository PAU4ChemAs as described in the README.md file, contains Python scripts written to build the PAU dataset modules (technologies, capital and operating costs, and chemical prices) for tracking chemical flows transfers, releases estimation, and identification of potential occupation exposure scenarios in pollution abatement units (PAUs). These PAUs are employed for on-site chemical end-of-life management. The folder datasets contains the outputs for each framework step. The Chemicals_in_categories.csv contains the chemicals for the TRI chemical categories. The EPA GitHub repository PAU_case_study as described in its readme.md entry, contains the Python scripts to run the manuscript case study for designing the PAUs, the data-driven models, and the decision-making module for chemicals of concern and tracking flow transfers at the end-of-life stage. The data was obtained by means of data engineering using different publicly-available databases. The properties of chemicals were obtained using the GitHub repository Properties_Scraper, while the PAU dataset using the repository PAU4Chem. Finally, the EPA GitHub repository Properties_Scraper contains a Python script to massively gather information about exposure limits and physical properties from different publicly-available sources: EPA, NOAA, OSHA, and the institute for Occupational Safety and Health of the German Social Accident Insurance (IFA). Also, all GitHub repositories describe the Python libraries required for running their code, how to use them, the obtained outputs files after running the Python script modules, and the corresponding EPA Disclaimer. This dataset is associated with the following publication: Hernandez-Betancur, J.D., M. Martin, and G.J. Ruiz-Mercado. A data engineering framework for on-site end-of-life industrial operations. JOURNAL OF CLEANER PRODUCTION. Elsevier Science Ltd, New York, NY, USA, 327: 129514, (2021).

  7. Pandas Practice Dataset

    • kaggle.com
    zip
    Updated Jan 27, 2023
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    Mrityunjay Pathak (2023). Pandas Practice Dataset [Dataset]. https://www.kaggle.com/datasets/themrityunjaypathak/pandas-practice-dataset/discussion
    Explore at:
    zip(493 bytes)Available download formats
    Dataset updated
    Jan 27, 2023
    Authors
    Mrityunjay Pathak
    License

    https://creativecommons.org/publicdomain/zero/1.0/https://creativecommons.org/publicdomain/zero/1.0/

    Description

    What is Pandas?

    Pandas is a Python library used for working with data sets.

    It has functions for analyzing, cleaning, exploring, and manipulating data.

    The name "Pandas" has a reference to both "Panel Data", and "Python Data Analysis" and was created by Wes McKinney in 2008.

    Why Use Pandas?

    Pandas allows us to analyze big data and make conclusions based on statistical theories.

    Pandas can clean messy data sets, and make them readable and relevant.

    Relevant data is very important in data science.

    What Can Pandas Do?

    Pandas gives you answers about the data. Like:

    Is there a correlation between two or more columns?

    What is average value?

    Max value?

    Min value?

  8. Data from: KGTorrent: A Dataset of Python Jupyter Notebooks from Kaggle

    • zenodo.org
    • dataon.kisti.re.kr
    • +1more
    bin, bz2, pdf
    Updated Jul 19, 2024
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    Luigi Quaranta; Fabio Calefato; Fabio Calefato; Filippo Lanubile; Filippo Lanubile; Luigi Quaranta (2024). KGTorrent: A Dataset of Python Jupyter Notebooks from Kaggle [Dataset]. http://doi.org/10.5281/zenodo.4468523
    Explore at:
    bz2, pdf, binAvailable download formats
    Dataset updated
    Jul 19, 2024
    Dataset provided by
    Zenodohttp://zenodo.org/
    Authors
    Luigi Quaranta; Fabio Calefato; Fabio Calefato; Filippo Lanubile; Filippo Lanubile; Luigi Quaranta
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    KGTorrent is a dataset of Python Jupyter notebooks from the Kaggle platform.

    The dataset is accompanied by a MySQL database containing metadata about the notebooks and the activity of Kaggle users on the platform. The information to build the MySQL database has been derived from Meta Kaggle, a publicly available dataset containing Kaggle metadata.

    In this package, we share the complete KGTorrent dataset (consisting of the dataset itself plus its companion database), as well as the specific version of Meta Kaggle used to build the database.

    More specifically, the package comprises the following three compressed archives:

    1. KGT_dataset.tar.bz2, the dataset of Jupyter notebooks;

    2. KGTorrent_dump_10-2020.sql.tar.bz2, the dump of the MySQL companion database;

    3. MetaKaggle27Oct2020.tar.bz2, a copy of the Meta Kaggle version used to build the database.

    Moreover, we include KGTorrent_logical_schema.pdf, the logical schema of the KGTorrent MySQL database.

  9. Sample data files for Python Course

    • figshare.com
    txt
    Updated Nov 4, 2022
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    Peter Verhaar (2022). Sample data files for Python Course [Dataset]. http://doi.org/10.6084/m9.figshare.21501549.v1
    Explore at:
    txtAvailable download formats
    Dataset updated
    Nov 4, 2022
    Dataset provided by
    Figsharehttp://figshare.com/
    Authors
    Peter Verhaar
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Sample data set used in an introductory course on Programming in Python

  10. datasets

    • figshare.com
    txt
    Updated Sep 27, 2017
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    Carlos Rodriguez-Contreras (2017). datasets [Dataset]. http://doi.org/10.6084/m9.figshare.5447167.v1
    Explore at:
    txtAvailable download formats
    Dataset updated
    Sep 27, 2017
    Dataset provided by
    Figsharehttp://figshare.com/
    figshare
    Authors
    Carlos Rodriguez-Contreras
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    This folder contains datasets to be downloaded from students for their practices with R and Python

  11. Z

    #PraCegoVer dataset

    • data.niaid.nih.gov
    • data-staging.niaid.nih.gov
    Updated Jan 19, 2023
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    Gabriel Oliveira dos Santos; Esther Luna Colombini; Sandra Avila (2023). #PraCegoVer dataset [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_5710561
    Explore at:
    Dataset updated
    Jan 19, 2023
    Dataset provided by
    Institute of Computing, University of Campinas
    Authors
    Gabriel Oliveira dos Santos; Esther Luna Colombini; Sandra Avila
    Description

    Automatically describing images using natural sentences is an essential task to visually impaired people's inclusion on the Internet. Although there are many datasets in the literature, most of them contain only English captions, whereas datasets with captions described in other languages are scarce.

    PraCegoVer arose on the Internet, stimulating users from social media to publish images, tag #PraCegoVer and add a short description of their content. Inspired by this movement, we have proposed the #PraCegoVer, a multi-modal dataset with Portuguese captions based on posts from Instagram. It is the first large dataset for image captioning in Portuguese with freely annotated images.

    PraCegoVer has 533,523 pairs with images and captions described in Portuguese collected from more than 14 thousand different profiles. Also, the average caption length in #PraCegoVer is 39.3 words and the standard deviation is 29.7.

    Dataset Structure

    PraCegoVer dataset is composed of the main file dataset.json and a collection of compressed files named images.tar.gz.partX

    containing the images. The file dataset.json comprehends a list of json objects with the attributes:

    user: anonymized user that made the post;

    filename: image file name;

    raw_caption: raw caption;

    caption: clean caption;

    date: post date.

    Each instance in dataset.json is associated with exactly one image in the images directory whose filename is pointed by the attribute filename. Also, we provide a sample with five instances, so the users can download the sample to get an overview of the dataset before downloading it completely.

    Download Instructions

    If you just want to have an overview of the dataset structure, you can download sample.tar.gz. But, if you want to use the dataset, or any of its subsets (63k and 173k), you must download all the files and run the following commands to uncompress and join the files:

    cat images.tar.gz.part* > images.tar.gz tar -xzvf images.tar.gz

    Alternatively, you can download the entire dataset from the terminal using the python script download_dataset.py available in PraCegoVer repository. In this case, first, you have to download the script and create an access token here. Then, you can run the following command to download and uncompress the image files:

    python download_dataset.py --access_token=

  12. Z

    Data Cleaning, Translation & Split of the Dataset for the Automatic...

    • data.niaid.nih.gov
    • zenodo.org
    Updated Aug 8, 2022
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    Köhler, Juliane (2022). Data Cleaning, Translation & Split of the Dataset for the Automatic Classification of Documents for the Classification System for the Berliner Handreichungen zur Bibliotheks- und Informationswissenschaft [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_6957841
    Explore at:
    Dataset updated
    Aug 8, 2022
    Authors
    Köhler, Juliane
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Cleaned_Dataset.csv – The combined CSV files of all scraped documents from DABI, e-LiS, o-bib and Springer.

    Data_Cleaning.ipynb – The Jupyter Notebook with python code for the analysis and cleaning of the original dataset.

    ger_train.csv – The German training set as CSV file.

    ger_validation.csv – The German validation set as CSV file.

    en_test.csv – The English test set as CSV file.

    en_train.csv – The English training set as CSV file.

    en_validation.csv – The English validation set as CSV file.

    splitting.py – The python code for splitting a dataset into train, test and validation set.

    DataSetTrans_de.csv – The final German dataset as a CSV file.

    DataSetTrans_en.csv – The final English dataset as a CSV file.

    translation.py – The python code for translating the cleaned dataset.

  13. h

    CodeRM-UnitTest

    • huggingface.co
    Updated Jan 20, 2025
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    Zeyao Ma (2025). CodeRM-UnitTest [Dataset]. https://huggingface.co/datasets/KAKA22/CodeRM-UnitTest
    Explore at:
    CroissantCroissant is a format for machine-learning datasets. Learn more about this at mlcommons.org/croissant.
    Dataset updated
    Jan 20, 2025
    Authors
    Zeyao Ma
    License

    Apache License, v2.0https://www.apache.org/licenses/LICENSE-2.0
    License information was derived automatically

    Description

    Dataset Description

    CodeRM-UnitTest dataset originates from the paper: Dynamic Scaling of Unit Tests for Code Reward Modeling available on arXiv. You can visit the homepage to learn more about the paper. It is a curated collection of high-quality synthetic Python unit tests, derived from two prominent code instruction tuning datasets: CodeFeedback-Filtered-Instruction and the training set of TACO. This dataset is used for training CodeRM-8B, a small yet powerful unit test… See the full description on the dataset page: https://huggingface.co/datasets/KAKA22/CodeRM-UnitTest.

  14. f

    datasets

    • figshare.com
    txt
    Updated Oct 5, 2017
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    Carlos Rodriguez-Contreras (2017). datasets [Dataset]. http://doi.org/10.6084/m9.figshare.5472970.v1
    Explore at:
    txtAvailable download formats
    Dataset updated
    Oct 5, 2017
    Dataset provided by
    figshare
    Authors
    Carlos Rodriguez-Contreras
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Datasets for practising in class

  15. Data from: NICHE: A Curated Dataset of Engineered Machine Learning Projects...

    • figshare.com
    txt
    Updated May 30, 2023
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    Ratnadira Widyasari; Zhou YANG; Ferdian Thung; Sheng Qin Sim; Fiona Wee; Camellia Lok; Jack Phan; Haodi Qi; Constance Tan; Qijin Tay; David LO (2023). NICHE: A Curated Dataset of Engineered Machine Learning Projects in Python [Dataset]. http://doi.org/10.6084/m9.figshare.21967265.v1
    Explore at:
    txtAvailable download formats
    Dataset updated
    May 30, 2023
    Dataset provided by
    figshare
    Figsharehttp://figshare.com/
    Authors
    Ratnadira Widyasari; Zhou YANG; Ferdian Thung; Sheng Qin Sim; Fiona Wee; Camellia Lok; Jack Phan; Haodi Qi; Constance Tan; Qijin Tay; David LO
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Machine learning (ML) has gained much attention and has been incorporated into our daily lives. While there are numerous publicly available ML projects on open source platforms such as GitHub, there have been limited attempts in filtering those projects to curate ML projects of high quality. The limited availability of such high-quality dataset poses an obstacle to understanding ML projects. To help clear this obstacle, we present NICHE, a manually labelled dataset consisting of 572 ML projects. Based on evidences of good software engineering practices, we label 441 of these projects as engineered and 131 as non-engineered. In this repository we provide "NICHE.csv" file that contains the list of the project names along with their labels, descriptive information for every dimension, and several basic statistics, such as the number of stars and commits. This dataset can help researchers understand the practices that are followed in high-quality ML projects. It can also be used as a benchmark for classifiers designed to identify engineered ML projects.

    GitHub page: https://github.com/soarsmu/NICHE

  16. T

    mnist

    • tensorflow.org
    • universe.roboflow.com
    • +4more
    Updated Jun 1, 2024
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    (2024). mnist [Dataset]. https://www.tensorflow.org/datasets/catalog/mnist
    Explore at:
    Dataset updated
    Jun 1, 2024
    Description

    The MNIST database of handwritten digits.

    To use this dataset:

    import tensorflow_datasets as tfds
    
    ds = tfds.load('mnist', split='train')
    for ex in ds.take(4):
     print(ex)
    

    See the guide for more informations on tensorflow_datasets.

    https://storage.googleapis.com/tfds-data/visualization/fig/mnist-3.0.1.png" alt="Visualization" width="500px">

  17. Vector datasets for workshop "Introduction to Geospatial Raster and Vector...

    • figshare.com
    Updated Oct 5, 2022
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    Ryan Avery (2022). Vector datasets for workshop "Introduction to Geospatial Raster and Vector Data with Python" [Dataset]. http://doi.org/10.6084/m9.figshare.21273837.v1
    Explore at:
    application/x-sqlite3Available download formats
    Dataset updated
    Oct 5, 2022
    Dataset provided by
    Figsharehttp://figshare.com/
    Authors
    Ryan Avery
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Cadaster data from PDOK used to illustrate the use of geopandas and shapely, geospatial python packages for manipulating vector data. The brpgewaspercelen_definitief_2020.gpkg file has been subsetted in order to make the download manageable for workshops. Other datasets are copies of those available from PDOK.

  18. Dataset of a Study of Computational reproducibility of Jupyter notebooks...

    • zenodo.org
    pdf, zip
    Updated Jul 11, 2024
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    Sheeba Samuel; Sheeba Samuel; Daniel Mietchen; Daniel Mietchen (2024). Dataset of a Study of Computational reproducibility of Jupyter notebooks from biomedical publications [Dataset]. http://doi.org/10.5281/zenodo.8226725
    Explore at:
    zip, pdfAvailable download formats
    Dataset updated
    Jul 11, 2024
    Dataset provided by
    Zenodohttp://zenodo.org/
    Authors
    Sheeba Samuel; Sheeba Samuel; Daniel Mietchen; Daniel Mietchen
    License

    CC0 1.0 Universal Public Domain Dedicationhttps://creativecommons.org/publicdomain/zero/1.0/
    License information was derived automatically

    Description

    This repository contains the dataset for the study of computational reproducibility of Jupyter notebooks from biomedical publications. Our focus lies in evaluating the extent of reproducibility of Jupyter notebooks derived from GitHub repositories linked to publications present in the biomedical literature repository, PubMed Central. We analyzed the reproducibility of Jupyter notebooks from GitHub repositories associated with publications indexed in the biomedical literature repository PubMed Central. The dataset includes the metadata information of the journals, publications, the Github repositories mentioned in the publications and the notebooks present in the Github repositories.

    Data Collection and Analysis

    We use the code for reproducibility of Jupyter notebooks from the study done by Pimentel et al., 2019 and adapted the code from ReproduceMeGit. We provide code for collecting the publication metadata from PubMed Central using NCBI Entrez utilities via Biopython.

    Our approach involves searching PMC using the esearch function for Jupyter notebooks using the query: ``(ipynb OR jupyter OR ipython) AND github''. We meticulously retrieve data in XML format, capturing essential details about journals and articles. By systematically scanning the entire article, encompassing the abstract, body, data availability statement, and supplementary materials, we extract GitHub links. Additionally, we mine repositories for key information such as dependency declarations found in files like requirements.txt, setup.py, and pipfile. Leveraging the GitHub API, we enrich our data by incorporating repository creation dates, update histories, pushes, and programming languages.

    All the extracted information is stored in a SQLite database. After collecting and creating the database tables, we ran a pipeline to collect the Jupyter notebooks contained in the GitHub repositories based on the code from Pimentel et al., 2019.

    Our reproducibility pipeline was started on 27 March 2023.

    Repository Structure

    Our repository is organized into two main folders:

    • archaeology: This directory hosts scripts designed to download, parse, and extract metadata from PubMed Central publications and associated repositories. There are 24 database tables created which store the information on articles, journals, authors, repositories, notebooks, cells, modules, executions, etc. in the db.sqlite database file.
    • analyses: Here, you will find notebooks instrumental in the in-depth analysis of data related to our study. The db.sqlite file generated by running the archaelogy folder is stored in the analyses folder for further analysis. The path can however be configured in the config.py file. There are two sets of notebooks: one set (naming pattern N[0-9]*.ipynb) is focused on examining data pertaining to repositories and notebooks, while the other set (PMC[0-9]*.ipynb) is for analyzing data associated with publications in PubMed Central, i.e.\ for plots involving data about articles, journals, publication dates or research fields. The resultant figures from the these notebooks are stored in the 'outputs' folder.
    • MethodsWorkflow: The MethodsWorkflow file provides a conceptual overview of the workflow used in this study.

    Accessing Data and Resources:

    • All the data generated during the initial study can be accessed at https://doi.org/10.5281/zenodo.6802158
    • For the latest results and re-run data, refer to this link.
    • The comprehensive SQLite database that encapsulates all the study's extracted data is stored in the db.sqlite file.
    • The metadata in xml format extracted from PubMed Central which contains the information about the articles and journal can be accessed in pmc.xml file.

    System Requirements:

    Running the pipeline:

    • Clone the computational-reproducibility-pmc repository using Git:
      git clone https://github.com/fusion-jena/computational-reproducibility-pmc.git
    • Navigate to the computational-reproducibility-pmc directory:
      cd computational-reproducibility-pmc/computational-reproducibility-pmc
    • Configure environment variables in the config.py file:
      GITHUB_USERNAME = os.environ.get("JUP_GITHUB_USERNAME", "add your github username here")
      GITHUB_TOKEN = os.environ.get("JUP_GITHUB_PASSWORD", "add your github token here")
    • Other environment variables can also be set in the config.py file.
      BASE_DIR = Path(os.environ.get("JUP_BASE_DIR", "./")).expanduser() # Add the path of directory where the GitHub repositories will be saved
      DB_CONNECTION = os.environ.get("JUP_DB_CONNECTION", "sqlite:///db.sqlite") # Add the path where the database is stored.
    • To set up conda environments for each python versions, upgrade pip, install pipenv, and install the archaeology package in each environment, execute:
      source conda-setup.sh
    • Change to the archaeology directory
      cd archaeology
    • Activate conda environment. We used py36 to run the pipeline.
      conda activate py36
    • Execute the main pipeline script (r0_main.py):
      python r0_main.py

    Running the analysis:

    • Navigate to the analysis directory.
      cd analyses
    • Activate conda environment. We use raw38 for the analysis of the metadata collected in the study.
      conda activate raw38
    • Install the required packages using the requirements.txt file.
      pip install -r requirements.txt
    • Launch Jupyterlab
      jupyter lab
    • Refer to the Index.ipynb notebook for the execution order and guidance.

    References:

  19. d

    Data from: Size distribution and reproductive data of the invasive Burmese...

    • catalog.data.gov
    • data.usgs.gov
    • +1more
    Updated Nov 19, 2025
    + more versions
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    U.S. Geological Survey (2025). Size distribution and reproductive data of the invasive Burmese python (Python molurus bivittatus) in the Greater Everglades Ecosystem, Florida, USA, 1995-2021 [Dataset]. https://catalog.data.gov/dataset/size-distribution-and-reproductive-data-of-the-invasive-burmese-python-python-molurus-1995
    Explore at:
    Dataset updated
    Nov 19, 2025
    Dataset provided by
    U.S. Geological Survey
    Area covered
    United States, Everglades, Florida
    Description

    This dataset contains morphometric information from Burmese pythons collected from an invasive population in southern Florida between 1995-2021. Scientists from the U.S. Geological Survey and the National Park Service curated this dataset as a repository for records of Burmese pythons found on or nearby federal lands in southern Florida, including Everglades National Park, Big Cypress National Preserve, Biscayne National Park, and Crocodile Lake National Wildlife Refuge. As such, numerous entities actively or incidentally involved in python research or management activities contributed specimens and/or data to this dataset, including but not limited to the U.S. Geological Survey, National Park Service, U.S. Fish and Wildlife Service, University of Florida, Conservancy of Southwest Florida, Florida Fish and Wildlife Conservation Commission, South Florida Water Management District, volunteers, and members of the public. The dataset includes python identification information, capture information, morphometric data, and necropsy data. The structure of the dataset is such that every row pertains to a single date that data were collected from a single python so that serial captures and morphological data collected from unique individuals can be tracked across time via different rows.

  20. T

    civil_comments

    • tensorflow.org
    • huggingface.co
    Updated Feb 28, 2023
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    (2023). civil_comments [Dataset]. https://www.tensorflow.org/datasets/catalog/civil_comments
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    Dataset updated
    Feb 28, 2023
    Description

    This version of the CivilComments Dataset provides access to the primary seven labels that were annotated by crowd workers, the toxicity and other tags are a value between 0 and 1 indicating the fraction of annotators that assigned these attributes to the comment text.

    The other tags are only available for a fraction of the input examples. They are currently ignored for the main dataset; the CivilCommentsIdentities set includes those labels, but only consists of the subset of the data with them. The other attributes that were part of the original CivilComments release are included only in the raw data. See the Kaggle documentation for more details about the available features.

    The comments in this dataset come from an archive of the Civil Comments platform, a commenting plugin for independent news sites. These public comments were created from 2015 - 2017 and appeared on approximately 50 English-language news sites across the world. When Civil Comments shut down in 2017, they chose to make the public comments available in a lasting open archive to enable future research. The original data, published on figshare, includes the public comment text, some associated metadata such as article IDs, publication IDs, timestamps and commenter-generated "civility" labels, but does not include user ids. Jigsaw extended this dataset by adding additional labels for toxicity, identity mentions, as well as covert offensiveness. This data set is an exact replica of the data released for the Jigsaw Unintended Bias in Toxicity Classification Kaggle challenge. This dataset is released under CC0, as is the underlying comment text.

    For comments that have a parent_id also in the civil comments data, the text of the previous comment is provided as the "parent_text" feature. Note that the splits were made without regard to this information, so using previous comments may leak some information. The annotators did not have access to the parent text when making the labels.

    To use this dataset:

    import tensorflow_datasets as tfds
    
    ds = tfds.load('civil_comments', split='train')
    for ex in ds.take(4):
     print(ex)
    

    See the guide for more informations on tensorflow_datasets.

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Chinmaya (2024). Dataset_Python_Question_Answer [Dataset]. https://www.kaggle.com/datasets/chinmayadatt/dataset-python-question-answer
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Dataset_Python_Question_Answer

Answer common questions about the Python programming language

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zip(189137 bytes)Available download formats
Dataset updated
Mar 29, 2024
Authors
Chinmaya
License

Attribution-NonCommercial-ShareAlike 3.0 (CC BY-NC-SA 3.0)https://creativecommons.org/licenses/by-nc-sa/3.0/
License information was derived automatically

Description

This dataset is about Python programming. Question and answers are generated using Gemma. There are more than four hundred questions and their corresponding answers about Python programming.

Questions are ranging from concepts like data-types, variables and keywords to regular-expression and threading.

I have used this dataset here

The code used for dataset generated is available here

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