Figures in scientific publications are critically important because they often show the data supporting key findings. Our systematic review of research articles published in top physiology journals (n = 703) suggests that, as scientists, we urgently need to change our practices for presenting continuous data in small sample size studies. Papers rarely included scatterplots, box plots, and histograms that allow readers to critically evaluate continuous data. Most papers presented continuous data in bar and line graphs. This is problematic, as many different data distributions can lead to the same bar or line graph. The full data may suggest different conclusions from the summary statistics. We recommend training investigators in data presentation, encouraging a more complete presentation of data, and changing journal editorial policies. Investigators can quickly make univariate scatterplots for small sample size studies using our Excel templates.

This part of the data release includes graphical representation (figures) of data from sediment cores collected in 2009 offshore of Palos Verdes, California. This file graphically presents combined data for each core (one core per page). Data on each figure are continuous core photograph, CT scan (where available), graphic diagram core description (graphic legend included at right; visual grain size scale of clay, silt, very fine sand [vf], fine sand [f], medium sand [med], coarse sand [c], and very coarse sand [vc]), multi-sensor core logger (MSCL) p-wave velocity (meters per second) and gamma-ray density (grams per cc), radiocarbon age (calibrated years before present) with analytical error (years), and pie charts that present grain-size data as percent sand (white), silt (light gray), and clay (dark gray). This is one of seven files included in this U.S. Geological Survey data release that include data from a set of sediment cores acquired from the continental slope, offshore Los Angeles and the Palos Verdes Peninsula, adjacent to the Palos Verdes Fault. Gravity cores were collected by the USGS in 2009 (cruise ID S-I2-09-SC; http://cmgds.marine.usgs.gov/fan_info.php?fan=SI209SC), and vibracores were collected with the Monterey Bay Aquarium Research Institute's remotely operated vehicle (ROV) Doc Ricketts in 2010 (cruise ID W-1-10-SC; http://cmgds.marine.usgs.gov/fan_info.php?fan=W110SC). One spreadsheet (PalosVerdesCores_Info.xlsx) contains core name, location, and length. One spreadsheet (PalosVerdesCores_MSCLdata.xlsx) contains Multi-Sensor Core Logger P-wave velocity, gamma-ray density, and magnetic susceptibility whole-core logs. One zipped folder of .bmp files (PalosVerdesCores_Photos.zip) contains continuous core photographs of the archive half of each core. One spreadsheet (PalosVerdesCores_GrainSize.xlsx) contains laser particle grain size sample information and analytical results. One spreadsheet (PalosVerdesCores_Radiocarbon.xlsx) contains radiocarbon sample information, results, and calibrated ages. One zipped folder of DICOM files (PalosVerdesCores_CT.zip) contains raw computed tomography (CT) image files. One .pdf file (PalosVerdesCores_Figures.pdf) contains combined displays of data for each core, including graphic diagram descriptive logs. This particular metadata file describes the information contained in the file PalosVerdesCores_Figures.pdf. All cores are archived by the U.S. Geological Survey Pacific Coastal and Marine Science Center.

The global bar graph displays market is anticipated to experience remarkable growth in the coming years, driven by increasing demand from various end-user industries. The market size was valued at USD XXX million in 2025 and is projected to reach USD XX million by 2033, exhibiting a CAGR of XX% from 2025 to 2033. This growth can be attributed to factors such as technological advancements, rising demand for visual data representation, and increasing adoption in sectors like electronics, medical, and aerospace. Among the key segments, the LED and LCD display types are expected to witness significant growth, owing to their superior brightness, clarity, and energy efficiency. The major regions driving the market include North America, Europe, and Asia Pacific. North America holds a dominant market share, with the United States being a notable contributor. The Asia Pacific region is projected to grow at a higher rate during the forecast period, driven by the rapidly expanding electronics and semiconductor industries in countries like China, India, and Japan. Key players in the bar graph displays market include akYtec, Everlight Electronics, Kingbright, Sifam Tinsley, and Texmate, among others. These companies are focusing on innovation, strategic partnerships, and geographical expansion to enhance their market presence.

Different graph types may differ in their suitability to support group comparisons, due to the underlying graph schemas. This study examined whether graph schemas are based on perceptual features (i.e., each graph type, e.g., bar or line graph, has its own graph schema) or common invariant structures (i.e., graph types share common schemas). Furthermore, it was of interest which graph type (bar, line, or pie) is optimal for comparing discrete groups. A switching paradigm was used in three experiments. Two graph types were examined at a time (Experiment 1: bar vs. line, Experiment 2: bar vs. pie, Experiment 3: line vs. pie). On each trial, participants received a data graph presenting the data from three groups and were to determine the numerical difference of group A and group B displayed in the graph. We scrutinized whether switching the type of graph from one trial to the next prolonged RTs. The slowing of RTs in switch trials in comparison to trials with only one graph type can indicate to what extent the graph schemas differ. As switch costs were observed in all pairings of graph types, none of the different pairs of graph types tested seems to fully share a common schema. Interestingly, there was tentative evidence for differences in switch costs among different pairings of graph types. Smaller switch costs in Experiment 1 suggested that the graph schemas of bar and line graphs overlap more strongly than those of bar graphs and pie graphs or line graphs and pie graphs. This implies that results were not in line with completely distinct schemas for different graph types either. Taken together, the pattern of results is consistent with a hierarchical view according to which a graph schema consists of parts shared for different graphs and parts that are specific for each graph type. Apart from investigating graph schemas, the study provided evidence for performance differences among graph types. We found that bar graphs yielded the fastest group comparisons compared to line graphs and pie graphs, suggesting that they are the most suitable when used to compare discrete groups.

The Knowledge Graph Visualization Tool market is experiencing robust growth, driven by the increasing need for organizations to effectively manage and understand complex data relationships. The market's expansion is fueled by the rising adoption of big data analytics, the need for improved data visualization capabilities, and the growing demand for intuitive tools that simplify complex information. Businesses across various sectors, including healthcare, finance, and technology, are leveraging these tools to gain actionable insights from their data, improve decision-making processes, and enhance operational efficiency. The market is segmented by application (e.g., business intelligence, data discovery, risk management) and type (e.g., cloud-based, on-premise). While the cloud-based segment currently dominates, the on-premise segment is expected to witness steady growth due to security and data control concerns in certain industries. Competition is relatively high, with established players and emerging startups vying for market share. The market is geographically diverse, with North America and Europe currently holding significant shares, while the Asia-Pacific region is predicted to show the fastest growth due to increasing digitalization and technological advancements. The forecast period (2025-2033) indicates continued expansion, with a projected Compound Annual Growth Rate (CAGR) that, assuming a conservative estimate based on current market trends and technological advancements, sits around 15%. This growth will be influenced by factors such as the continuous development of advanced visualization techniques, increased integration with artificial intelligence (AI) and machine learning (ML) algorithms, and the growing demand for real-time data analysis. However, challenges remain, including the need for user-friendly interfaces, concerns about data privacy and security, and the high cost of implementation for some organizations, particularly smaller businesses. Nevertheless, the overall market outlook for Knowledge Graph Visualization Tools is positive, presenting significant opportunities for vendors who can successfully address these challenges and cater to the evolving needs of their customers.

Additional file 3. Feature assessments for the entire collection of 208 graphical displays for meta-analysis and systematic reviews.

Most current graph neural networks (GNNs) are designed from the view of methodology and rarely consider the inherent characters of graph. Although the inherent characters may impact the performance of GNNs, very few methods are proposed to resolve the issue. In this work, we mainly focus on improving the performance of graph convolutional networks (GCNs) on the graphs without node features. In order to resolve the issue, we propose a method called t-hopGCN to describe t-hop neighbors by the shortest path between two nodes, then the adjacency matrix of t-hop neighbors as features to perform node classification. Experimental results show that t-hopGCN can significantly improve the performance of node classification in the graphs without node features. More importantly, adding the adjacency matrix of t-hop neighbors can improve the performance of existing popular GNNs on node classification.

Outline

This dataset is originally created for the Knowledge Graph Reasoning Challenge for Social Issues (KGRC4SI)

Video data that simulates daily life actions in a virtual space from Scenario Data.

Knowledge graphs, and transcriptions of the Video Data content ("who" did what "action" with what "object," when and where, and the resulting "state" or "position" of the object).

Knowledge Graph Embedding Data are created for reasoning based on machine learning

This data is open to the public as open data

Details

Videos

mp4 format

203 action scenarios

For each scenario, there is a character rear view (file name ending in 0), an indoor camera switching view (file name ending in 1), and a fixed camera view placed in each corner of the room (file name ending in 2-5). Also, for each action scenario, data was generated for a minimum of 1 to a maximum of 7 patterns with different room layouts (scenes). A total of 1,218 videos

Videos with slowly moving characters simulate the movements of elderly people.

Knowledge Graphs

RDF format

203 knowledge graphs corresponding to the videos

Includes schema and location supplement information

The schema is described below

SPARQL endpoints and query examples are available

Script Data

txt format

Data provided to VirtualHome2KG to generate videos and knowledge graphs

Includes the action title and a brief description in text format.

Embedding

Embedding Vectors in TransE, ComplEx, and RotatE. Created with DGL-KE (https://dglke.dgl.ai/doc/)

Embedding Vectors created with jRDF2vec (https://github.com/dwslab/jRDF2Vec).

Specification of Ontology

Please refer to the specification for descriptions of all classes, instances, and properties: https://aistairc.github.io/VirtualHome2KG/vh2kg_ontology.htm

Related Resources

KGRC4SI Final Presentations with automatic English subtitles (YouTube)

VirtualHome2KG (Software)

VirtualHome-AIST (Unity)

VirtualHome-AIST (Python API)

Visualization Tool (Software)

Script Editor (Software)

This project is inspired on https://github.com/neo4j-graph-examples/twitter-v2.

Twitter Graph

Show data from your personal Twitter account

The Graph Your Network application inserts your Twitter activity into Neo4j.

https://neo4jsandbox.com/guides/twitter/img/twitter-data-model.svg" alt="">

Content

~10 MB of graphs data (CSV)

43.325 node labels - Hashtag - Link - Me - Source - Tweet - User

57.896 relationship types - AMPLIFIES - CONTAINS - FOLLOWS - INTERACTS_WITH - MENTIONS - POSTS - REPLY_TO - RETWEETS - RT_MENTIONS - SIMILAR_TO - TAGS - USING

China Import: Colour Data/Graphic Display Tube data was reported at 0.000 USD mn in Dec 2019. This stayed constant from the previous number of 0.000 USD mn for Nov 2019. China Import: Colour Data/Graphic Display Tube data is updated monthly, averaging 0.018 USD mn from Jan 2001 (Median) to Dec 2019, with 228 observations. The data reached an all-time high of 165.303 USD mn in Feb 2001 and a record low of 0.000 USD mn in Dec 2019. China Import: Colour Data/Graphic Display Tube data remains active status in CEIC and is reported by General Administration of Customs. The data is categorized under China Premium Database’s International Trade – Table CN.JA: USD: Import by Major Commodity: Value.

The global Bar Graph Displays market is poised for robust expansion, projected to reach an estimated $XXX million by 2025, with a significant Compound Annual Growth Rate (CAGR) of XX% through 2033. This substantial growth is primarily fueled by the escalating demand for visually intuitive and compact data representation solutions across a multitude of industries. The Electronics and Semiconductors sector stands out as a major consumer, leveraging bar graph displays for real-time performance monitoring and diagnostic tools. Similarly, the Medical industry increasingly relies on these displays for patient monitoring equipment, offering clear and immediate insights into vital signs. The Aerospace sector also contributes to market growth, utilizing bar graph displays in cockpit instrumentation and control systems for efficient information delivery. Emerging applications in industrial automation and consumer electronics are further broadening the market's reach. The market's trajectory is being shaped by several key drivers and trends. Advancements in display technologies, including the increasing adoption of LED and LCD variants, are enhancing the performance, energy efficiency, and visual clarity of bar graph displays, making them more attractive for diverse applications. Miniaturization and the integration of smart functionalities are also pivotal trends, enabling the development of more sophisticated and user-friendly display solutions. However, the market is not without its restraints. The high initial cost associated with some advanced display technologies and the availability of alternative data visualization methods, such as digital readouts and advanced graphical interfaces, could pose challenges to widespread adoption in certain price-sensitive segments. Despite these restraints, the inherent simplicity, ease of understanding, and cost-effectiveness of bar graph displays, especially in straightforward data representation, ensure their continued relevance and market demand. Companies like akYtec, Everlight Electronics, and Kingbright are at the forefront of innovation, driving the market forward with their cutting-edge product offerings.

Graph theory is useful for estimating time-dependent model parameters via weighted least-squares using interferometric synthetic aperture radar (InSAR) data. Plotting acquisition dates (epochs) as vertices and pair-wise interferometric combinations as edges defines an incidence graph. The edge-vertex incidence matrix and the normalized edge Laplacian matrix are factors in the covariance matrix for the pair-wise data. Using empirical measures of residual scatter in the pair-wise observations, we estimate the variance at each epoch by inverting the covariance of the pair-wise data. We evaluate the rank deficiency of the corresponding least-squares problem via the edge-vertex incidence matrix. We implement our method in a MATLAB software package called GraphTreeTA available on GitHub (https://github.com/feigl/gipht). We apply temporal adjustment to the data set described in Lu et al. (2005) at Okmok volcano, Alaska, which erupted most recently in 1997 and 2008. The data set contains 44 differential volumetric changes and uncertainties estimated from interferograms between 1997 and 2004. Estimates show that approximately half of the magma volume lost during the 1997 eruption was recovered by the summer of 2003. Between June 2002 and September 2003, the estimated rate of volumetric increase is (6.2 +/- 0.6) x 10^6 m^3/yr. Our preferred model provides a reasonable fit that is compatible with viscoelastic relaxation in the five years following the 1997 eruption. Although we demonstrate the approach using volumetric rates of change, our formulation in terms of incidence graphs applies to any quantity derived from pair-wise differences, such as wrapped phase or wrapped residuals. Date of final oral examination: 05/19/2016 This thesis is approved by the following members of the Final Oral Committee: Kurt L. Feigl, Professor, Geoscience Michael Cardiff, Assistant Professor, Geoscience Clifford H. Thurber, Vilas Distinguished Professor, Geoscience

Previous researches support that graphs are relevant decision aids to tasks related to the interpretation of numerical information. Moreover, literature shows that different types of graphical information can help or harm the accuracy on decision making of accountants and financial analysts. We conducted a 4×2 mixed-design experiment to examine the effects of numerical information disclosure on financial analysts’ accuracy, and investigated the role of overconfidence in decision making. Results show that compared to text, column graph enhanced accuracy on decision making, followed by line graphs. No difference was found between table and textual disclosure. Overconfidence harmed accuracy, and both genders behaved overconfidently. Additionally, the type of disclosure (text, table, line graph and column graph) did not affect the overconfidence of individuals, providing evidence that overconfidence is a personal trait. This study makes three contributions. First, it provides evidence from a larger sample size (295) of financial analysts instead of a smaller sample size of students that graphs are relevant decision aids to tasks related to the interpretation of numerical information. Second, it uses the text as a baseline comparison to test how different ways of information disclosure (line and column graphs, and tables) can enhance understandability of information. Third, it brings an internal factor to this process: overconfidence, a personal trait that harms the decision-making process of individuals. At the end of this paper several research paths are highlighted to further study the effect of internal factors (personal traits) on financial analysts’ accuracy on decision making regarding numerical information presented in a graphical form. In addition, we offer suggestions concerning some practical implications for professional accountants, auditors, financial analysts and standard setters.

This dataset contains two files created for the experiments presented in the article: Publication and Maintenance of RDB2RDF Views Externally Materialized in Enterprise Knowledge Graphs.

mapR2RML_MusicBrainz_completo.txt: We created the R2RML mapping for translating MBD data into the Music Ontology vocabulary, which is used for publishing the LMB view. The LMB view was materialized using the D2RQ tool. It took 67 minutes to materialize the view with approximately 41.1 GB of NTriples. We also provided SPARQL endpoint for querying LMB View.

TriggersAndProcedures.txt: We created the triggers, procedures, and class in java to implement the rules required to compute and publish the changesets.

relationalViewDefinition.pdf: This document gives details about the process of creating the relational views used in the experiments.

Redmob's Identity Graph Data helps you bring fragmented user data into one unified view. Built in-house and refreshed weekly, the mobile identity graph connects online and offline identifiers.

Designed for adtech platforms, brands, CRM, and CDP owners, Redmob enables cross-device audience tracking, deterministic identity resolution, and more precise attribution modeling across digital touchpoints.

Use cases

The Redmob Identity Graph is a mobile-centric database of linked identifiers that enables:

• Cross-device matching to connect mobile, web, and offline behaviors
• Enrich your CRM and CDP with stable IDs to improve marketing automation
• Match mobile device IDs to emails, cookies, and offline data
• Create lasting user profiles by connecting data from different channels
• Enrich customer data for better segmentation and engagement

Key benefits:

• Connects users across devices with Redmob's in-house identity graph
• Weekly updates keep audience profiles fresh and accurate
• Links offline and online data to complete the user picture
• Built for adtech with reliable, high-accuracy matches

This dataset contains graphs and a movie. Both show visualizations of rotational curves in the transversal plane within a Standardized Gait Cycle from Vertebra prominens downwards, ending at the pelvis. They display 201 anonymous healthy people aged 18-70 years walking at 2,3,4, and 5 km/h on a treadmill. They are based on a SPSS (v23) syntax file and a relating graph template that can be found at our datasets as well. Files are numbered subsequently across all speeds and can be linked by number to its non-standardized counterpart in a further dataset. Positive values show vertebral body rotation to the left, negative values show rotation to the right. Percent of the Standardized Gait Cycle (0-100%) is displayed on the abscissa, always starting with Initial Contact of the right foot. Within a Standardized Gait Cycle the duration of the stance phase right is expected to be 60% (Perry, 1992). As can be seen in the graphs, interpolating spline functions work for average walking speed measurements leading to a more precise determination of relevant and characteristic points (e.g. maxima, phase shifts, lumbar and thoracic movement behavior), thereby aiding in in the clarification of individual features.

Our aim is to extend the framework of typed attributed graphs in [1] to generalized typed attributed graphs. They are based on generalized attributed graph morphisms, short GAG-morphisms, which allow to change the type graph, data signature, and domain. This allows to formulate type hierarchies and views of visual languages defined by GAG-morphisms between type graphs, short GATG-morphisms. In order to study interaction and integration of views, restriction of views along type hierarchies, restriction and integration of consistent view models and reflection of behaviour between different typed attributed graph transformation systems we present suitable conditions for the construction of pushouts and pullbacks, and special van Kampen properties in the category GAGraphs of generalized attributed graphs. Moreover, we show that (GAGraphs,M) and (GAGraphsATG,M) are adhesive HLR categories for the class M of injective, persistent, and signature preserving morphisms.

This part of the data release includes graphical representation (figures) of data of sediment cores collected in 2014 in Monterey Canyon. It is one of five files included in this U.S. Geological Survey data release that include data from a set of sediment cores acquired from the continental slope, north of Monterey Canyon, offshore central California. Vibracores and push cores were collected with the Monterey Bay Aquarium Research Institute’s (MBARI’s) remotely operated vehicle (ROV) Doc Ricketts in 2014 (cruise ID 2014-615-FA). One spreadsheet (NorthernFlankMontereyCanyonCores_Info.xlsx) contains core name, location, and length. One spreadsheet (NorthernFlankMontereyCanyonCores_MSCLdata.xlsx) contains Multi-Sensor Core Logger P-wave velocity and gamma-ray density whole-core logs of vibracores. One zipped folder of .bmp files (NorthernFlankMontereyCanyonCores_Photos.zip) contains continuous core photographs of the archive half of each vibracore. One spreadsheet (NorthernFlankMontereyCanyonCores_Radiocarbon.xlsx) contains radiocarbon sample information, results, and calibrated ages. One .pdf file (NorthernFlankMontereyCanyonCores_Figures.pdf) contains combined displays of data for each vibracore, including graphic diagram descriptive logs. This particular metadata file describes the information contained in the file NorthernFlankMontereyCanyon_Figures.pdf. All vibracores are archived by the U.S. Geological Survey Pacific Coastal and Marine Science Center. Other remaining core material, if available, is archived at MBARI.

Categorical scatterplots with R for biologists: a step-by-step guide

Benjamin Petre1, Aurore Coince2, Sophien Kamoun1

1 The Sainsbury Laboratory, Norwich, UK; 2 Earlham Institute, Norwich, UK

Weissgerber and colleagues (2015) recently stated that ‘as scientists, we urgently need to change our practices for presenting continuous data in small sample size studies’. They called for more scatterplot and boxplot representations in scientific papers, which ‘allow readers to critically evaluate continuous data’ (Weissgerber et al., 2015). In the Kamoun Lab at The Sainsbury Laboratory, we recently implemented a protocol to generate categorical scatterplots (Petre et al., 2016; Dagdas et al., 2016). Here we describe the three steps of this protocol: 1) formatting of the data set in a .csv file, 2) execution of the R script to generate the graph, and 3) export of the graph as a .pdf file.

Protocol

• Step 1: format the data set as a .csv file. Store the data in a three-column excel file as shown in Powerpoint slide. The first column ‘Replicate’ indicates the biological replicates. In the example, the month and year during which the replicate was performed is indicated. The second column ‘Condition’ indicates the conditions of the experiment (in the example, a wild type and two mutants called A and B). The third column ‘Value’ contains continuous values. Save the Excel file as a .csv file (File -> Save as -> in ‘File Format’, select .csv). This .csv file is the input file to import in R.

• Step 2: execute the R script (see Notes 1 and 2). Copy the script shown in Powerpoint slide and paste it in the R console. Execute the script. In the dialog box, select the input .csv file from step 1. The categorical scatterplot will appear in a separate window. Dots represent the values for each sample; colors indicate replicates. Boxplots are superimposed; black dots indicate outliers.

• Step 3: save the graph as a .pdf file. Shape the window at your convenience and save the graph as a .pdf file (File -> Save as). See Powerpoint slide for an example.

Notes

• Note 1: install the ggplot2 package. The R script requires the package ‘ggplot2’ to be installed. To install it, Packages & Data -> Package Installer -> enter ‘ggplot2’ in the Package Search space and click on ‘Get List’. Select ‘ggplot2’ in the Package column and click on ‘Install Selected’. Install all dependencies as well.

• Note 2: use a log scale for the y-axis. To use a log scale for the y-axis of the graph, use the command line below in place of command line #7 in the script.

7 Display the graph in a separate window. Dot colors indicate

replicates

graph + geom_boxplot(outlier.colour='black', colour='black') + geom_jitter(aes(col=Replicate)) + scale_y_log10() + theme_bw()

References

Dagdas YF, Belhaj K, Maqbool A, Chaparro-Garcia A, Pandey P, Petre B, et al. (2016) An effector of the Irish potato famine pathogen antagonizes a host autophagy cargo receptor. eLife 5:e10856.

Petre B, Saunders DGO, Sklenar J, Lorrain C, Krasileva KV, Win J, et al. (2016) Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies. PLoS ONE 11(2):e0149035

Weissgerber TL, Milic NM, Winham SJ, Garovic VD (2015) Beyond Bar and Line Graphs: Time for a New Data Presentation Paradigm. PLoS Biol 13(4):e1002128

https://cran.r-project.org/

http://ggplot2.org/