73 datasets found
  1. Weekly United States COVID-19 Cases and Deaths by State - ARCHIVED

    • healthdata.gov
    • data.virginia.gov
    • +1more
    application/rdfxml +5
    Updated Oct 21, 2022
    + more versions
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    data.cdc.gov (2022). Weekly United States COVID-19 Cases and Deaths by State - ARCHIVED [Dataset]. https://healthdata.gov/w/hiqp-x67x/default?cur=_65-WvB31Cw
    Explore at:
    application/rssxml, application/rdfxml, csv, xml, json, tsvAvailable download formats
    Dataset updated
    Oct 21, 2022
    Dataset provided by
    data.cdc.gov
    Area covered
    United States
    Description

    Reporting of new Aggregate Case and Death Count data was discontinued May 11, 2023, with the expiration of the COVID-19 public health emergency declaration. This dataset will receive a final update on June 1, 2023, to reconcile historical data through May 10, 2023, and will remain publicly available.

    Aggregate Data Collection Process Since the start of the COVID-19 pandemic, data have been gathered through a robust process with the following steps:

    • A CDC data team reviews and validates the information obtained from jurisdictions’ state and local websites via an overnight data review process.
    • If more than one official county data source exists, CDC uses a comprehensive data selection process comparing each official county data source, and takes the highest case and death counts respectively, unless otherwise specified by the state.
    • CDC compiles these data and posts the finalized information on COVID Data Tracker.
    • County level data is aggregated to obtain state and territory specific totals.
    This process is collaborative, with CDC and jurisdictions working together to ensure the accuracy of COVID-19 case and death numbers. County counts provide the most up-to-date numbers on cases and deaths by report date. CDC may retrospectively update counts to correct data quality issues.

    Methodology Changes Several differences exist between the current, weekly-updated dataset and the archived version:

    • Source: The current Weekly-Updated Version is based on county-level aggregate count data, while the Archived Version is based on State-level aggregate count data.
    • Confirmed/Probable Cases/Death breakdown:  While the probable cases and deaths are included in the total case and total death counts in both versions (if applicable), they were reported separately from the confirmed cases and deaths by jurisdiction in the Archived Version.  In the current Weekly-Updated Version, the counts by jurisdiction are not reported by confirmed or probable status (See Confirmed and Probable Counts section for more detail).
    • Time Series Frequency: The current Weekly-Updated Version contains weekly time series data (i.e., one record per week per jurisdiction), while the Archived Version contains daily time series data (i.e., one record per day per jurisdiction).
    • Update Frequency: The current Weekly-Updated Version is updated weekly, while the Archived Version was updated twice daily up to October 20, 2022.
    Important note: The counts reflected during a given time period in this dataset may not match the counts reflected for the same time period in the archived dataset noted above. Discrepancies may exist due to differences between county and state COVID-19 case surveillance and reconciliation efforts.

    Confirmed and Probable Counts In this dataset, counts by jurisdiction are not displayed by confirmed or probable status. Instead, confirmed and probable cases and deaths are included in the Total Cases and Total Deaths columns, when available. Not all jurisdictions report probable cases and deaths to CDC.* Confirmed and probable case definition criteria are described here:

    Council of State and Territorial Epidemiologists (ymaws.com).

    Deaths CDC reports death data on other sections of the website: CDC COVID Data Tracker: Home, CDC COVID Data Tracker: Cases, Deaths, and Testing, and NCHS Provisional Death Counts. Information presented on the COVID Data Tracker pages is based on the same source (to

  2. n

    Coronavirus (Covid-19) Data in the United States

    • nytimes.com
    • openicpsr.org
    • +4more
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    New York Times, Coronavirus (Covid-19) Data in the United States [Dataset]. https://www.nytimes.com/interactive/2020/us/coronavirus-us-cases.html
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    Dataset provided by
    New York Times
    Description

    The New York Times is releasing a series of data files with cumulative counts of coronavirus cases in the United States, at the state and county level, over time. We are compiling this time series data from state and local governments and health departments in an attempt to provide a complete record of the ongoing outbreak.

    Since late January, The Times has tracked cases of coronavirus in real time as they were identified after testing. Because of the widespread shortage of testing, however, the data is necessarily limited in the picture it presents of the outbreak.

    We have used this data to power our maps and reporting tracking the outbreak, and it is now being made available to the public in response to requests from researchers, scientists and government officials who would like access to the data to better understand the outbreak.

    The data begins with the first reported coronavirus case in Washington State on Jan. 21, 2020. We will publish regular updates to the data in this repository.

  3. Johns Hopkins COVID-19 Case Tracker

    • data.world
    csv, zip
    Updated Jun 8, 2025
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    The Associated Press (2025). Johns Hopkins COVID-19 Case Tracker [Dataset]. https://data.world/associatedpress/johns-hopkins-coronavirus-case-tracker
    Explore at:
    zip, csvAvailable download formats
    Dataset updated
    Jun 8, 2025
    Dataset provided by
    data.world, Inc.
    Authors
    The Associated Press
    Time period covered
    Jan 22, 2020 - Mar 9, 2023
    Area covered
    Description

    Updates

    • Notice of data discontinuation: Since the start of the pandemic, AP has reported case and death counts from data provided by Johns Hopkins University. Johns Hopkins University has announced that they will stop their daily data collection efforts after March 10. As Johns Hopkins stops providing data, the AP will also stop collecting daily numbers for COVID cases and deaths. The HHS and CDC now collect and visualize key metrics for the pandemic. AP advises using those resources when reporting on the pandemic going forward.

    • April 9, 2020

      • The population estimate data for New York County, NY has been updated to include all five New York City counties (Kings County, Queens County, Bronx County, Richmond County and New York County). This has been done to match the Johns Hopkins COVID-19 data, which aggregates counts for the five New York City counties to New York County.
    • April 20, 2020

      • Johns Hopkins death totals in the US now include confirmed and probable deaths in accordance with CDC guidelines as of April 14. One significant result of this change was an increase of more than 3,700 deaths in the New York City count. This change will likely result in increases for death counts elsewhere as well. The AP does not alter the Johns Hopkins source data, so probable deaths are included in this dataset as well.
    • April 29, 2020

      • The AP is now providing timeseries data for counts of COVID-19 cases and deaths. The raw counts are provided here unaltered, along with a population column with Census ACS-5 estimates and calculated daily case and death rates per 100,000 people. Please read the updated caveats section for more information.
    • September 1st, 2020

      • Johns Hopkins is now providing counts for the five New York City counties individually.
    • February 12, 2021

      • The Ohio Department of Health recently announced that as many as 4,000 COVID-19 deaths may have been underreported through the state’s reporting system, and that the "daily reported death counts will be high for a two to three-day period."
      • Because deaths data will be anomalous for consecutive days, we have chosen to freeze Ohio's rolling average for daily deaths at the last valid measure until Johns Hopkins is able to back-distribute the data. The raw daily death counts, as reported by Johns Hopkins and including the backlogged death data, will still be present in the new_deaths column.
    • February 16, 2021

      - Johns Hopkins has reconciled Ohio's historical deaths data with the state.

      Overview

    The AP is using data collected by the Johns Hopkins University Center for Systems Science and Engineering as our source for outbreak caseloads and death counts for the United States and globally.

    The Hopkins data is available at the county level in the United States. The AP has paired this data with population figures and county rural/urban designations, and has calculated caseload and death rates per 100,000 people. Be aware that caseloads may reflect the availability of tests -- and the ability to turn around test results quickly -- rather than actual disease spread or true infection rates.

    This data is from the Hopkins dashboard that is updated regularly throughout the day. Like all organizations dealing with data, Hopkins is constantly refining and cleaning up their feed, so there may be brief moments where data does not appear correctly. At this link, you’ll find the Hopkins daily data reports, and a clean version of their feed.

    The AP is updating this dataset hourly at 45 minutes past the hour.

    To learn more about AP's data journalism capabilities for publishers, corporations and financial institutions, go here or email kromano@ap.org.

    Queries

    Use AP's queries to filter the data or to join to other datasets we've made available to help cover the coronavirus pandemic

    Interactive

    The AP has designed an interactive map to track COVID-19 cases reported by Johns Hopkins.

    @(https://datawrapper.dwcdn.net/nRyaf/15/)

    Interactive Embed Code

    <iframe title="USA counties (2018) choropleth map Mapping COVID-19 cases by county" aria-describedby="" id="datawrapper-chart-nRyaf" src="https://datawrapper.dwcdn.net/nRyaf/10/" scrolling="no" frameborder="0" style="width: 0; min-width: 100% !important;" height="400"></iframe><script type="text/javascript">(function() {'use strict';window.addEventListener('message', function(event) {if (typeof event.data['datawrapper-height'] !== 'undefined') {for (var chartId in event.data['datawrapper-height']) {var iframe = document.getElementById('datawrapper-chart-' + chartId) || document.querySelector("iframe[src*='" + chartId + "']");if (!iframe) {continue;}iframe.style.height = event.data['datawrapper-height'][chartId] + 'px';}}});})();</script>
    

    Caveats

    • This data represents the number of cases and deaths reported by each state and has been collected by Johns Hopkins from a number of sources cited on their website.
    • In some cases, deaths or cases of people who've crossed state lines -- either to receive treatment or because they became sick and couldn't return home while traveling -- are reported in a state they aren't currently in, because of state reporting rules.
    • In some states, there are a number of cases not assigned to a specific county -- for those cases, the county name is "unassigned to a single county"
    • This data should be credited to Johns Hopkins University's COVID-19 tracking project. The AP is simply making it available here for ease of use for reporters and members.
    • Caseloads may reflect the availability of tests -- and the ability to turn around test results quickly -- rather than actual disease spread or true infection rates.
    • Population estimates at the county level are drawn from 2014-18 5-year estimates from the American Community Survey.
    • The Urban/Rural classification scheme is from the Center for Disease Control and Preventions's National Center for Health Statistics. It puts each county into one of six categories -- from Large Central Metro to Non-Core -- according to population and other characteristics. More details about the classifications can be found here.

    Johns Hopkins timeseries data - Johns Hopkins pulls data regularly to update their dashboard. Once a day, around 8pm EDT, Johns Hopkins adds the counts for all areas they cover to the timeseries file. These counts are snapshots of the latest cumulative counts provided by the source on that day. This can lead to inconsistencies if a source updates their historical data for accuracy, either increasing or decreasing the latest cumulative count. - Johns Hopkins periodically edits their historical timeseries data for accuracy. They provide a file documenting all errors in their timeseries files that they have identified and fixed here

    Attribution

    This data should be credited to Johns Hopkins University COVID-19 tracking project

  4. Trends in COVID-19 Cases and Deaths in the United States, by County-level...

    • data.virginia.gov
    • healthdata.gov
    • +1more
    csv, json, rdf, xsl
    Updated Jan 13, 2025
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    Centers for Disease Control and Prevention (2025). Trends in COVID-19 Cases and Deaths in the United States, by County-level Population Factors - ARCHIVED [Dataset]. https://data.virginia.gov/dataset/trends-in-covid-19-cases-and-deaths-in-the-united-states-by-county-level-population-factors-arc
    Explore at:
    xsl, json, csv, rdfAvailable download formats
    Dataset updated
    Jan 13, 2025
    Dataset provided by
    Centers for Disease Control and Preventionhttp://www.cdc.gov/
    Area covered
    United States
    Description

    Reporting of Aggregate Case and Death Count data was discontinued on May 11, 2023, with the expiration of the COVID-19 public health emergency declaration. Although these data will continue to be publicly available, this dataset will no longer be updated.

    The surveillance case definition for COVID-19, a nationally notifiable disease, was first described in a position statement from the Council for State and Territorial Epidemiologists, which was later revised. However, there is some variation in how jurisdictions implemented these case definitions. More information on how CDC collects COVID-19 case surveillance data can be found at FAQ: COVID-19 Data and Surveillance.

    Aggregate Data Collection Process Since the beginning of the COVID-19 pandemic, data were reported from state and local health departments through a robust process with the following steps:

    • Aggregate county-level counts were obtained indirectly, via automated overnight web collection, or directly, via a data submission process.
    • If more than one official county data source existed, CDC used a comprehensive data selection process comparing each official county data source to retrieve the highest case and death counts, unless otherwise specified by the state.
    • A CDC data team reviewed counts for congruency prior to integration and set up alerts to monitor for discrepancies in the data.
    • CDC routinely compiled these data and post the finalized information on COVID Data Tracker.
    • County level data were aggregated to obtain state- and territory- specific totals.
    • Counting of cases and deaths is based on date of report and not on the date of symptom onset. CDC calculates rates in these data by using population estimates provided by the US Census Bureau Population Estimates Program (2019 Vintage).
    • COVID-19 aggregate case and death data are organized in a time series that includes cumulative number of cases and deaths as reported by a jurisdiction on a given date. New case and death counts are calculated as the week-to-week change in cumulative counts of cases and deaths reported (i.e., newly reported cases and deaths = cumulative number of cases/deaths reported this week minus the cumulative total reported the prior week.

    This process was collaborative, with CDC and jurisdictions working together to ensure the accuracy of COVID-19 case and death numbers. County counts provided the most up-to-date numbers on cases and deaths by report date. Throughout data collection, CDC retrospectively updated counts to correct known data quality issues.

    Description This archived public use dataset focuses on the cumulative and weekly case and death rates per 100,000 persons within various sociodemographic factors across all states and their counties. All resulting data are expressed as rates calculated as the number of cases or deaths per 100,000 persons in counties meeting various classification criteria using the US Census Bureau Population Estimates Program (2019 Vintage).

    Each county within jurisdictions is classified into multiple categories for each factor. All rates in this dataset are based on classification of counties by the characteristics of their population, not individual-level factors. This applies to each of the available factors observed in this dataset. Specific factors and their corresponding categories are detailed below.

    Population-level factors Each unique population factor is detailed below. Please note that the “Classification” column describes each of the 12 factors in the dataset, including a data dict

  5. The World Dataset of COVID-19

    • kaggle.com
    Updated May 25, 2021
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    C-3PO (2021). The World Dataset of COVID-19 [Dataset]. https://www.kaggle.com/datasets/aditeloo/the-world-dataset-of-covid19/code
    Explore at:
    CroissantCroissant is a format for machine-learning datasets. Learn more about this at mlcommons.org/croissant.
    Dataset updated
    May 25, 2021
    Dataset provided by
    Kagglehttp://kaggle.com/
    Authors
    C-3PO
    License

    https://creativecommons.org/publicdomain/zero/1.0/https://creativecommons.org/publicdomain/zero/1.0/

    Area covered
    World
    Description

    Context

    These datasets are from Our World in Data. Their complete COVID-19 dataset is a collection of the COVID-19 data maintained by Our World in Data. It is updated daily and includes data on confirmed cases, deaths, hospitalizations, testing, and vaccinations as well as other variables of potential interest.

    Content

    Confirmed cases and deaths:

    our data comes from the COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University (JHU). We discuss how and when JHU collects and publishes this data. The cases & deaths dataset is updated daily. Note: the number of cases or deaths reported by any institution—including JHU, the WHO, the ECDC, and others—on a given day does not necessarily represent the actual number on that date. This is because of the long reporting chain that exists between a new case/death and its inclusion in statistics. This also means that negative values in cases and deaths can sometimes appear when a country corrects historical data because it had previously overestimated the number of cases/deaths. Alternatively, large changes can sometimes (although rarely) be made to a country's entire time series if JHU decides (and has access to the necessary data) to correct values retrospectively.

    Hospitalizations and intensive care unit (ICU) admissions:

    our data comes from the European Centre for Disease Prevention and Control (ECDC) for a select number of European countries; the government of the United Kingdom; the Department of Health & Human Services for the United States; the COVID-19 Tracker for Canada. Unfortunately, we are unable to provide data on hospitalizations for other countries: there is currently no global, aggregated database on COVID-19 hospitalization, and our team at Our World in Data does not have the capacity to build such a dataset.

    Testing for COVID-19:

    this data is collected by the Our World in Data team from official reports; you can find further details in our post on COVID-19 testing, including our checklist of questions to understand testing data, information on geographical and temporal coverage, and detailed country-by-country source information. The testing dataset is updated around twice a week.

    Acknowledgements

    Our World in Data GitHub repository for covid-19.

    Inspiration

    All we love data, cause we love to go inside it and discover the truth that's the main inspiration I have.

  6. d

    COVID-19 County Level Data - Archive

    • datasets.ai
    • data.ct.gov
    • +1more
    23, 40, 55, 8
    Updated Oct 8, 2024
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    State of Connecticut (2024). COVID-19 County Level Data - Archive [Dataset]. https://datasets.ai/datasets/covid-19-county-level-data
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    8, 40, 23, 55Available download formats
    Dataset updated
    Oct 8, 2024
    Dataset authored and provided by
    State of Connecticut
    Description

    Covid-19 Daily metrics at the county level

    As of 6/1/2023, this data set is no longer being updated.

    The COVID-19 Data Report is posted on the Open Data Portal every day at 3pm. The report uses data from multiple sources, including external partners; if data from external partners are not received by 3pm, they are not available for inclusion in the report and will not be displayed. Data that are received after 3pm will still be incorporated and published in the next report update.

    The cumulative number of COVID-19 cases (cumulative_cases) includes all cases of COVID-19 that have ever been reported to DPH. The cumulative number of COVID_19 cases in the last 7 days (cases_7days) only includes cases where the specimen collection date is within the past 7 days. While most cases are reported to DPH within 48 hours of specimen collection, there are a small number of cases that routinely are delayed, and will have specimen collection dates that fall outside of the rolling 7 day reporting window. Additionally, reporting entities may submit correction files to contribute historic data during initial onboarding or to address data quality issues; while this is rare, these correction files may cause a large amount of data from outside of the current reporting window to be uploaded in a single day; this would result in the change in cumulative_cases being much larger than the value of cases_7days.

    On June 4, 2020, the US Department of Health and Human Services issued guidance requiring the reporting of positive and negative test results for SARS-CoV-2; this guidance expired with the end of the federal PHE on 5/11/2023, and negative SARS-CoV-2 results were removed from the List of Reportable Laboratory Findings. DPH will no longer be reporting metrics that were dependent on the collection of negative test results, specifically total tests performed or percent positivity. Positive antigen and PCR/NAAT results will continue to be reportable.

  7. O

    COVID-19 case rate per 100,000 population and percent test positivity in the...

    • data.ct.gov
    • datasets.ai
    • +1more
    application/rdfxml +5
    Updated Oct 8, 2020
    + more versions
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    Department of Public Health (2020). COVID-19 case rate per 100,000 population and percent test positivity in the last 7 days by town - ARCHIVE [Dataset]. https://data.ct.gov/Health-and-Human-Services/COVID-19-case-rate-per-100-000-population-and-perc/s22x-83rd
    Explore at:
    application/rdfxml, json, csv, tsv, xml, application/rssxmlAvailable download formats
    Dataset updated
    Oct 8, 2020
    Dataset authored and provided by
    Department of Public Health
    License

    U.S. Government Workshttps://www.usa.gov/government-works
    License information was derived automatically

    Description

    DPH note about change from 7-day to 14-day metrics: As of 10/15/2020, this dataset is no longer being updated. Starting on 10/15/2020, these metrics will be calculated using a 14-day average rather than a 7-day average. The new dataset using 14-day averages can be accessed here: https://data.ct.gov/Health-and-Human-Services/COVID-19-case-rate-per-100-000-population-and-perc/hree-nys2

    As you know, we are learning more about COVID-19 all the time, including the best ways to measure COVID-19 activity in our communities. CT DPH has decided to shift to 14-day rates because these are more stable, particularly at the town level, as compared to 7-day rates. In addition, since the school indicators were initially published by DPH last summer, CDC has recommended 14-day rates and other states (e.g., Massachusetts) have started to implement 14-day metrics for monitoring COVID transmission as well.

    With respect to geography, we also have learned that many people are looking at the town-level data to inform decision making, despite emphasis on the county-level metrics in the published addenda. This is understandable as there has been variation within counties in COVID-19 activity (for example, rates that are higher in one town than in most other towns in the county).

    This dataset includes a weekly count and weekly rate per 100,000 population for COVID-19 cases, a weekly count of COVID-19 PCR diagnostic tests, and a weekly percent positivity rate for tests among people living in community settings. Dates are based on date of specimen collection (cases and positivity).

    A person is considered a new case only upon their first COVID-19 testing result because a case is defined as an instance or bout of illness. If they are tested again subsequently and are still positive, it still counts toward the test positivity metric but they are not considered another case.

    These case and test counts do not include cases or tests among people residing in congregate settings, such as nursing homes, assisted living facilities, or correctional facilities.

    These data are updated weekly; the previous week period for each dataset is the previous Sunday-Saturday, known as an MMWR week (https://wwwn.cdc.gov/nndss/document/MMWR_week_overview.pdf). The date listed is the date the dataset was last updated and corresponds to a reporting period of the previous MMWR week. For instance, the data for 8/20/2020 corresponds to a reporting period of 8/9/2020-8/15/2020.

    Notes: 9/25/2020: Data for Mansfield and Middletown for the week of Sept 13-19 were unavailable at the time of reporting due to delays in lab reporting.

  8. COVID-19 Outbreak Data

    • data.chhs.ca.gov
    • data.ca.gov
    • +2more
    csv, zip
    Updated Jun 5, 2025
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    California Department of Public Health (2025). COVID-19 Outbreak Data [Dataset]. https://data.chhs.ca.gov/dataset/covid-19-outbreak-data
    Explore at:
    csv(62919), zip, csv(326192)Available download formats
    Dataset updated
    Jun 5, 2025
    Dataset authored and provided by
    California Department of Public Healthhttps://www.cdph.ca.gov/
    Description

    This dataset contains numbers of COVID-19 outbreaks and associated cases, categorized by setting, reported to CDPH since January 1, 2021.

    AB 685 (Chapter 84, Statutes of 2020) and the Cal/OSHA COVID-19 Emergency Temporary Standards (Title 8, Subchapter 7, Sections 3205-3205.4) required non-healthcare employers in California to report workplace COVID-19 outbreaks to their local health department (LHD) between January 1, 2021 – December 31, 2022. Beginning January 1, 2023, non-healthcare employer reporting of COVID-19 outbreaks to local health departments is voluntary, unless a local order is in place. More recent data collected without mandated reporting may therefore be less representative of all outbreaks that have occurred, compared to earlier data collected during mandated reporting. Licensed health facilities continue to be mandated to report outbreaks to LHDs.

    LHDs report confirmed outbreaks to the California Department of Public Health (CDPH) via the California Reportable Disease Information Exchange (CalREDIE), the California Connected (CalCONNECT) system, or other established processes. Data are compiled and categorized by setting by CDPH. Settings are categorized by U.S. Census industry codes. Total outbreaks and cases are included for individual industries as well as for broader industrial sectors.

    The first dataset includes numbers of outbreaks in each setting by month of onset, for outbreaks reported to CDPH since January 1, 2021. This dataset includes some outbreaks with onset prior to January 1 that were reported to CDPH after January 1; these outbreaks are denoted with month of onset “Before Jan 2021.” The second dataset includes cumulative numbers of COVID-19 outbreaks with onset after January 1, 2021, categorized by setting. Due to reporting delays, the reported numbers may not reflect all outbreaks that have occurred as of the reporting date; additional outbreaks may have occurred that have not yet been reported to CDPH.

    While many of these settings are workplaces, cases may have occurred among workers, other community members who visited the setting, or both. Accordingly, these data do not distinguish between outbreaks involving only workers, outbreaks involving only residents or patrons, or outbreaks involving both.

    Several additional data limitations should be kept in mind:

    • Outbreaks are classified as “Insufficient information” for outbreaks where not enough information was available for CDPH to assign an industry code.

    • Some sectors, particularly congregate residential settings, may have increased testing and therefore increased likelihood of outbreak recognition and reporting. As a result, in congregate residential settings, the number of outbreak-associated cases may be more accurate.

    • However, in most settings, outbreak and case counts are likely underestimates. For most cases, it is not possible to identify the source of exposure, as many cases have multiple possible exposures.

    • Because some settings have been at times been closed or open with capacity restrictions, numbers of outbreak reports in those settings do not reflect COVID-19 transmission risk.

    • The number of outbreaks in different settings will depend on the number of different workplaces in each setting. More outbreaks would be expected in settings with many workplaces compared to settings with few workplaces.

  9. COVID-19 Post-Vaccination Infection Data (ARCHIVED)

    • data.chhs.ca.gov
    • data.ca.gov
    • +4more
    csv, xlsx, zip
    Updated Aug 30, 2024
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    California Department of Public Health (2024). COVID-19 Post-Vaccination Infection Data (ARCHIVED) [Dataset]. https://data.chhs.ca.gov/dataset/covid-19-post-vaccination-infection-data
    Explore at:
    zip, csv(78921), csv(38212), xlsx(11056), csv(90508)Available download formats
    Dataset updated
    Aug 30, 2024
    Dataset authored and provided by
    California Department of Public Healthhttps://www.cdph.ca.gov/
    Description

    Note: This dataset is no longer being updated due to the end of the COVID-19 Public Health Emergency.

    The California Department of Public Health (CDPH) is identifying vaccination status of COVID-19 cases, hospitalizations, and deaths by analyzing the state immunization registry and registry of confirmed COVID-19 cases. Post-vaccination cases are individuals who have a positive SARS-Cov-2 molecular test (e.g. PCR) at least 14 days after they have completed their primary vaccination series.

    Tracking cases of COVID-19 that occur after vaccination is important for monitoring the impact of immunization campaigns. While COVID-19 vaccines are safe and effective, some cases are still expected in persons who have been vaccinated, as no vaccine is 100% effective. For more information, please see https://www.cdph.ca.gov/Programs/CID/DCDC/Pages/COVID-19/Post-Vaccine-COVID19-Cases.aspx

    Post-vaccination infection data is updated monthly and includes data on cases, hospitalizations, and deaths among the unvaccinated and the vaccinated. Partially vaccinated individuals are excluded. To account for reporting and processing delays, there is at least a one-month lag in provided data (for example data published on 9/9/22 will include data through 7/31/22).

    Notes:

    • On September 9, 2022, the post-vaccination data has been changed to compare unvaccinated with those with at least a primary series completed for persons age 5+. These data will be updated monthly (first Thursday of the month) and include at least a one month lag.

    • On February 2, 2022, the post-vaccination data has been changed to distinguish between vaccination with a primary series only versus vaccinated and boosted. The previous dataset has been uploaded as an archived table. Additionally, the lag on this data has been extended to 14 days.

    • On November 29, 2021, the denominator for calculating vaccine coverage has been changed from age 16+ to age 12+ to reflect new vaccine eligibility criteria. The previous dataset based on age 16+ denominators has been uploaded as an archived table.

  10. COVID-19 Reported Patient Impact and Hospital Capacity by State (RAW)

    • healthdata.gov
    • datahub.hhs.gov
    • +2more
    Updated May 3, 2024
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    U.S. Department of Health & Human Services (2024). COVID-19 Reported Patient Impact and Hospital Capacity by State (RAW) [Dataset]. https://healthdata.gov/dataset/COVID-19-Reported-Patient-Impact-and-Hospital-Capa/6xf2-c3ie
    Explore at:
    xml, csv, application/rssxml, application/rdfxml, tsv, application/geo+json, kml, kmzAvailable download formats
    Dataset updated
    May 3, 2024
    Dataset provided by
    United States Department of Health and Human Serviceshttp://www.hhs.gov/
    Authors
    U.S. Department of Health & Human Services
    License

    https://www.usa.gov/government-workshttps://www.usa.gov/government-works

    Description

    After May 3, 2024, this dataset and webpage will no longer be updated because hospitals are no longer required to report data on COVID-19 hospital admissions, and hospital capacity and occupancy data, to HHS through CDC’s National Healthcare Safety Network. Data voluntarily reported to NHSN after May 1, 2024, will be available starting May 10, 2024, at COVID Data Tracker Hospitalizations.

    The following dataset provides state-aggregated data for hospital utilization. These are derived from reports with facility-level granularity across two main sources: (1) HHS TeleTracking, and (2) reporting provided directly to HHS Protect by state/territorial health departments on behalf of their healthcare facilities.

    The file will be updated regularly and provides the latest values reported by each facility within the last four days for all time. This allows for a more comprehensive picture of the hospital utilization within a state by ensuring a hospital is represented, even if they miss a single day of reporting.

    No statistical analysis is applied to account for non-response and/or to account for missing data.

    The below table displays one value for each field (i.e., column). Sometimes, reports for a given facility will be provided to more than one reporting source: HHS TeleTracking, NHSN, and HHS Protect. When this occurs, to ensure that there are not duplicate reports, prioritization is applied to the numbers for each facility.

    On June 26, 2023 the field "reporting_cutoff_start" was replaced by the field "date".

    On April 27, 2022 the following pediatric fields were added:

  11. all_pediatric_inpatient_bed_occupied
  12. all_pediatric_inpatient_bed_occupied_coverage
  13. all_pediatric_inpatient_beds
  14. all_pediatric_inpatient_beds_coverage
  15. previous_day_admission_pediatric_covid_confirmed_0_4
  16. previous_day_admission_pediatric_covid_confirmed_0_4_coverage
  17. previous_day_admission_pediatric_covid_confirmed_12_17
  18. previous_day_admission_pediatric_covid_confirmed_12_17_coverage
  19. previous_day_admission_pediatric_covid_confirmed_5_11
  20. previous_day_admission_pediatric_covid_confirmed_5_11_coverage
  21. previous_day_admission_pediatric_covid_confirmed_unknown
  22. previous_day_admission_pediatric_covid_confirmed_unknown_coverage
  23. staffed_icu_pediatric_patients_confirmed_covid
  24. staffed_icu_pediatric_patients_confirmed_covid_coverage
  25. staffed_pediatric_icu_bed_occupancy
  26. staffed_pediatric_icu_bed_occupancy_coverage
  27. total_staffed_pediatric_icu_beds
  28. total_staffed_pediatric_icu_beds_coverage

    On January 19, 2022, the following fields have been added to this dataset:
  29. inpatient_beds_used_covid
  30. inpatient_beds_used_covid_coverage

    On September 17, 2021, this data set has had the following fields added:
  31. icu_patients_confirmed_influenza,
  32. icu_patients_confirmed_influenza_coverage,
  33. previous_day_admission_influenza_confirmed,
  34. previous_day_admission_influenza_confirmed_coverage,
  35. previous_day_deaths_covid_and_influenza,
  36. previous_day_deaths_covid_and_influenza_coverage,
  37. previous_day_deaths_influenza,
  38. previous_day_deaths_influenza_coverage,
  39. total_patients_hospitalized_confirmed_influenza,
  40. total_patients_hospitalized_confirmed_influenza_and_covid,
  41. total_patients_hospitalized_confirmed_influenza_and_covid_coverage,
  42. total_patients_hospitalized_confirmed_influenza_coverage

    On September 13, 2021, this data set has had the following fields added:
  43. on_hand_supply_therapeutic_a_casirivimab_imdevimab_courses,
  44. on_hand_supply_therapeutic_b_bamlanivimab_courses,
  45. on_hand_supply_therapeutic_c_bamlanivimab_etesevimab_courses,
  46. previous_week_therapeutic_a_casirivimab_imdevimab_courses_used,
  47. previous_week_therapeutic_b_bamlanivimab_courses_used,
  48. previous_week_therapeutic_c_bamlanivimab_etesevimab_courses_used

    On June 30, 2021, this data set has had the following fields added:
  49. deaths_covid
  50. deaths_covid_coverage

    On April 30, 2021, this data set has had the following fields added:
  51. previous_day_admission_adult_covid_confirmed_18-19
  52. previous_day_admission_adult_covid_confirmed_18-19_coverage
  53. previous_day_admission_adult_covid_confirmed_20-29_coverage
  54. previous_day_admission_adult_covid_confirmed_30-39
  55. previous_day_admission_adult_covid_confirmed_30-39_coverage
  56. previous_day_admission_adult_covid_confirmed_40-49
  57. previous_day_admission_adult_covid_confirmed_40-49_coverage
  58. previous_day_admission_adult_covid_confirmed_40-49_coverage
  59. previous_day_admission_adult_covid_confirmed_50-59
  60. previous_day_admission_adult_covid_confirmed_50-59_coverage
  61. previous_day_admission_adult_covid_confirmed_60-69
  62. previous_day_admission_adult_covid_confirmed_60-69_coverage
  63. previous_day_admission_adult_covid_confirmed_70-79
  64. previous_day_admission_adult_covid_confirmed_70-79_coverage
  65. previous_day_admission_adult_covid_confirmed_80+
  66. previous_day_admission_adult_covid_confirmed_80+_coverage
  67. previous_day_admission_adult_covid_confirmed_unknown
  68. previous_day_admission_adult_covid_confirmed_unknown_coverage
  69. previous_day_admission_adult_covid_suspected_18-19
  70. previous_day_admission_adult_covid_suspected_18-19_coverage
  71. previous_day_admission_adult_covid_suspected_20-29
  72. previous_day_admission_adult_covid_suspected_20-29_coverage
  73. previous_day_admission_adult_covid_suspected_30-39
  74. previous_day_admission_adult_covid_suspected_30-39_coverage
  75. previous_day_admission_adult_covid_suspected_40-49
  76. previous_day_admission_adult_covid_suspected_40-49_coverage
  77. previous_day_admission_adult_covid_suspected_50-59
  78. previous_day_admission_adult_covid_suspected_50-59_coverage
  79. previous_day_admission_adult_covid_suspected_60-69
  80. previous_day_admission_adult_covid_suspected_60-69_coverage
  81. previous_day_admission_adult_covid_suspected_70-79
  82. previous_day_admission_adult_covid_suspected_70-79_coverage
  83. previous_day_admission_adult_covid_suspected_80+
  84. previous_day_admission_adult_covid_suspected_80+_coverage
  85. previous_day_admission_adult_covid_suspected_unknown
  86. previous_day_admission_adult_covid_suspected_unknown_coverage

  • Weekly United States COVID-19 Cases and Deaths by County - ARCHIVED

    • data.virginia.gov
    • healthdata.gov
    • +1more
    csv, json, rdf, xsl
    Updated Jan 13, 2025
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    Centers for Disease Control and Prevention (2025). Weekly United States COVID-19 Cases and Deaths by County - ARCHIVED [Dataset]. https://data.virginia.gov/dataset/weekly-united-states-covid-19-cases-and-deaths-by-county-archived
    Explore at:
    xsl, rdf, csv, jsonAvailable download formats
    Dataset updated
    Jan 13, 2025
    Dataset provided by
    Centers for Disease Control and Preventionhttp://www.cdc.gov/
    Area covered
    United States
    Description

    Note: The cumulative case count for some counties (with small population) is higher than expected due to the inclusion of non-permanent residents in COVID-19 case counts.

    Reporting of Aggregate Case and Death Count data was discontinued on May 11, 2023, with the expiration of the COVID-19 public health emergency declaration. Although these data will continue to be publicly available, this dataset will no longer be updated.

    Aggregate Data Collection Process Since the beginning of the COVID-19 pandemic, data were reported through a robust process with the following steps:

    • Aggregate county-level counts were obtained indirectly, via automated overnight web collection, or directly, via a data submission process.
    • If more than one official county data source existed, CDC used a comprehensive data selection process comparing each official county data source to retrieve the highest case and death counts, unless otherwise specified by the state.
    • A CDC data team reviewed counts for congruency prior to integration. CDC routinely compiled these data and post the finalized information on COVID Data Tracker.
    • Cases and deaths are based on date of report and not on the date of symptom onset. CDC calculates rates in this data by using population estimates provided by the US Census Bureau Population Estimates Program (2019 Vintage).
    • COVID-19 aggregate case and death data were organized in a time series that includes cumulative number of cases and deaths as reported by a jurisdiction on a given date. New case and death counts were calculated as the week-to-week change in reported cumulative cases and deaths (i.e., newly reported cases and deaths = cumulative number of cases/deaths reported this week minus the cumulative total reported the week before.

    This process was collaborative, with CDC and jurisdictions working together to ensure the accuracy of COVID-19 case and death numbers. County counts provided the most up-to-date numbers on cases and deaths by report date. Throughout data collection, CDC retrospectively updated counts to correct known data quality issues. CDC also worked with jurisdictions after the end of the public health emergency declaration to finalize county data.

    • Source: The weekly archived dataset is based on county-level aggregate count data
    • Confirmed/Probable Cases/Death breakdown: Cumulative cases and deaths for each county are included. Total reported cases include probable and confirmed cases.
    • Time Series Frequency: The weekly archived dataset contains weekly time series data (i.e., one record per week per county)

    Important note: The counts reflected during a given time period in this dataset may not match the counts reflected for the same time period in the daily archived dataset noted above. Discrepancies may exist due to differences between county and state COVID-19 case surveillance and reconciliation efforts.

    The surveillance case definition for COVID-19, a nationally notifiable disease, was first described in a position statement from the Council for State and Territorial Epidemiologists, which was later revised. However, there is some variation in how jurisdictions implement these case classifications. More information on how CDC collects COVID-19 case surveillance data can be found at FAQ: COVID-19 Data and Surveillance.

    Confirmed and Probable Counts In this dataset, counts by jurisdiction are not displayed by confirmed or probable status. Instead, counts of confirmed and probable cases and deaths are included in the Total Cases and Total Deaths columns, when available. Not all jurisdictions report

  • o

    The U.S. COVID-19 County Policy Database

    • openicpsr.org
    delimited
    Updated Sep 22, 2022
    + more versions
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    Rita Hamad; Mark Pletcher; Thomas Carton (2022). The U.S. COVID-19 County Policy Database [Dataset]. http://doi.org/10.3886/E180482V1
    Explore at:
    delimitedAvailable download formats
    Dataset updated
    Sep 22, 2022
    Dataset provided by
    Louisiana Public Health Institute
    University of California San Francisco
    Authors
    Rita Hamad; Mark Pletcher; Thomas Carton
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Area covered
    LA 47.St. Tammany, CA 33.Sonoma, LA 43.De Soto, LA 64.Hancock, UT 162.Sanpete, NY 91.Richmond, LA 45.Lincoln, UT 146.Morgan, CA 9.Del Norte, TX 132.Bosque, United States
    Description

    It is increasingly recognized that policies have played a role in both alleviating and exacerbating the health and economic consequences of the COVID-19 pandemic. Yet there has been limited work to systematically evaluate the substantial variation in local COVID-19-related policies in the U.S. The objective of the U.S. COVID-19 County Policy (UCCP) Database is to systematically gather, characterize, and assess variation in U.S. county-level COVID-19-related policies. The current data upload represents the first wave of data collection, which includes data on over 20 policies gathered across 171 counties in 7 states during January-March 2021. These include county-level COVID-19-related policies within 3 policy domains that are likely to affect a variety of health outcomes: (1) containment/closure, (2) economic support, and (3) public health. In ongoing work, we are conducting retrospective longitudinal weekly data collection for the period 2020-2021 from a larger swath of 300+ U.S. counties in all 50 states and Washington D.C., and the current database will be updated with new data as it becomes available.

  • Z

    INTRODUCTION OF COVID-NEWS-US-NNK AND COVID-NEWS-BD-NNK DATASET

    • data.niaid.nih.gov
    Updated Jul 19, 2024
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    Nafiz Sadman (2024). INTRODUCTION OF COVID-NEWS-US-NNK AND COVID-NEWS-BD-NNK DATASET [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_4047647
    Explore at:
    Dataset updated
    Jul 19, 2024
    Dataset provided by
    Nishat Anjum
    Nafiz Sadman
    Kishor Datta Gupta
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Area covered
    Bangladesh, United States
    Description

    Introduction

    There are several works based on Natural Language Processing on newspaper reports. Mining opinions from headlines [ 1 ] using Standford NLP and SVM by Rameshbhaiet. Al.compared several algorithms on a small and large dataset. Rubinet. al., in their paper [ 2 ], created a mechanism to differentiate fake news from real ones by building a set of characteristics of news according to their types. The purpose was to contribute to the low resource data available for training machine learning algorithms. Doumitet. al.in [ 3 ] have implemented LDA, a topic modeling approach to study bias present in online news media.

    However, there are not many NLP research invested in studying COVID-19. Most applications include classification of chest X-rays and CT-scans to detect presence of pneumonia in lungs [ 4 ], a consequence of the virus. Other research areas include studying the genome sequence of the virus[ 5 ][ 6 ][ 7 ] and replicating its structure to fight and find a vaccine. This research is crucial in battling the pandemic. The few NLP based research publications are sentiment classification of online tweets by Samuel et el [ 8 ] to understand fear persisting in people due to the virus. Similar work has been done using the LSTM network to classify sentiments from online discussion forums by Jelodaret. al.[ 9 ]. NKK dataset is the first study on a comparatively larger dataset of a newspaper report on COVID-19, which contributed to the virus’s awareness to the best of our knowledge.

    2 Data-set Introduction

    2.1 Data Collection

    We accumulated 1000 online newspaper report from United States of America (USA) on COVID-19. The newspaper includes The Washington Post (USA) and StarTribune (USA). We have named it as “Covid-News-USA-NNK”. We also accumulated 50 online newspaper report from Bangladesh on the issue and named it “Covid-News-BD-NNK”. The newspaper includes The Daily Star (BD) and Prothom Alo (BD). All these newspapers are from the top provider and top read in the respective countries. The collection was done manually by 10 human data-collectors of age group 23- with university degrees. This approach was suitable compared to automation to ensure the news were highly relevant to the subject. The newspaper online sites had dynamic content with advertisements in no particular order. Therefore there were high chances of online scrappers to collect inaccurate news reports. One of the challenges while collecting the data is the requirement of subscription. Each newspaper required $1 per subscriptions. Some criteria in collecting the news reports provided as guideline to the human data-collectors were as follows:

    The headline must have one or more words directly or indirectly related to COVID-19.

    The content of each news must have 5 or more keywords directly or indirectly related to COVID-19.

    The genre of the news can be anything as long as it is relevant to the topic. Political, social, economical genres are to be more prioritized.

    Avoid taking duplicate reports.

    Maintain a time frame for the above mentioned newspapers.

    To collect these data we used a google form for USA and BD. We have two human editor to go through each entry to check any spam or troll entry.

    2.2 Data Pre-processing and Statistics

    Some pre-processing steps performed on the newspaper report dataset are as follows:

    Remove hyperlinks.

    Remove non-English alphanumeric characters.

    Remove stop words.

    Lemmatize text.

    While more pre-processing could have been applied, we tried to keep the data as much unchanged as possible since changing sentence structures could result us in valuable information loss. While this was done with help of a script, we also assigned same human collectors to cross check for any presence of the above mentioned criteria.

    The primary data statistics of the two dataset are shown in Table 1 and 2.

    Table 1: Covid-News-USA-NNK data statistics

    No of words per headline

    7 to 20

    No of words per body content

    150 to 2100

    Table 2: Covid-News-BD-NNK data statistics No of words per headline

    10 to 20

    No of words per body content

    100 to 1500

    2.3 Dataset Repository

    We used GitHub as our primary data repository in account name NKK^1. Here, we created two repositories USA-NKK^2 and BD-NNK^3. The dataset is available in both CSV and JSON format. We are regularly updating the CSV files and regenerating JSON using a py script. We provided a python script file for essential operation. We welcome all outside collaboration to enrich the dataset.

    3 Literature Review

    Natural Language Processing (NLP) deals with text (also known as categorical) data in computer science, utilizing numerous diverse methods like one-hot encoding, word embedding, etc., that transform text to machine language, which can be fed to multiple machine learning and deep learning algorithms.

    Some well-known applications of NLP includes fraud detection on online media sites[ 10 ], using authorship attribution in fallback authentication systems[ 11 ], intelligent conversational agents or chatbots[ 12 ] and machine translations used by Google Translate[ 13 ]. While these are all downstream tasks, several exciting developments have been made in the algorithm solely for Natural Language Processing tasks. The two most trending ones are BERT[ 14 ], which uses bidirectional encoder-decoder architecture to create the transformer model, that can do near-perfect classification tasks and next-word predictions for next generations, and GPT-3 models released by OpenAI[ 15 ] that can generate texts almost human-like. However, these are all pre-trained models since they carry huge computation cost. Information Extraction is a generalized concept of retrieving information from a dataset. Information extraction from an image could be retrieving vital feature spaces or targeted portions of an image; information extraction from speech could be retrieving information about names, places, etc[ 16 ]. Information extraction in texts could be identifying named entities and locations or essential data. Topic modeling is a sub-task of NLP and also a process of information extraction. It clusters words and phrases of the same context together into groups. Topic modeling is an unsupervised learning method that gives us a brief idea about a set of text. One commonly used topic modeling is Latent Dirichlet Allocation or LDA[17].

    Keyword extraction is a process of information extraction and sub-task of NLP to extract essential words and phrases from a text. TextRank [ 18 ] is an efficient keyword extraction technique that uses graphs to calculate the weight of each word and pick the words with more weight to it.

    Word clouds are a great visualization technique to understand the overall ’talk of the topic’. The clustered words give us a quick understanding of the content.

    4 Our experiments and Result analysis

    We used the wordcloud library^4 to create the word clouds. Figure 1 and 3 presents the word cloud of Covid-News-USA- NNK dataset by month from February to May. From the figures 1,2,3, we can point few information:

    In February, both the news paper have talked about China and source of the outbreak.

    StarTribune emphasized on Minnesota as the most concerned state. In April, it seemed to have been concerned more.

    Both the newspaper talked about the virus impacting the economy, i.e, bank, elections, administrations, markets.

    Washington Post discussed global issues more than StarTribune.

    StarTribune in February mentioned the first precautionary measurement: wearing masks, and the uncontrollable spread of the virus throughout the nation.

    While both the newspaper mentioned the outbreak in China in February, the weight of the spread in the United States are more highlighted through out March till May, displaying the critical impact caused by the virus.

    We used a script to extract all numbers related to certain keywords like ’Deaths’, ’Infected’, ’Died’ , ’Infections’, ’Quarantined’, Lock-down’, ’Diagnosed’ etc from the news reports and created a number of cases for both the newspaper. Figure 4 shows the statistics of this series. From this extraction technique, we can observe that April was the peak month for the covid cases as it gradually rose from February. Both the newspaper clearly shows us that the rise in covid cases from February to March was slower than the rise from March to April. This is an important indicator of possible recklessness in preparations to battle the virus. However, the steep fall from April to May also shows the positive response against the attack. We used Vader Sentiment Analysis to extract sentiment of the headlines and the body. On average, the sentiments were from -0.5 to -0.9. Vader Sentiment scale ranges from -1(highly negative to 1(highly positive). There were some cases

    where the sentiment scores of the headline and body contradicted each other,i.e., the sentiment of the headline was negative but the sentiment of the body was slightly positive. Overall, sentiment analysis can assist us sort the most concerning (most negative) news from the positive ones, from which we can learn more about the indicators related to COVID-19 and the serious impact caused by it. Moreover, sentiment analysis can also provide us information about how a state or country is reacting to the pandemic. We used PageRank algorithm to extract keywords from headlines as well as the body content. PageRank efficiently highlights important relevant keywords in the text. Some frequently occurring important keywords extracted from both the datasets are: ’China’, Government’, ’Masks’, ’Economy’, ’Crisis’, ’Theft’ , ’Stock market’ , ’Jobs’ , ’Election’, ’Missteps’, ’Health’, ’Response’. Keywords extraction acts as a filter allowing quick searches for indicators in case of locating situations of the economy,

  • Covid-19 Pandemic Dataset (Updated every 24 hours)

    • kaggle.com
    Updated May 23, 2021
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    Sinan Ocaktan (2021). Covid-19 Pandemic Dataset (Updated every 24 hours) [Dataset]. https://www.kaggle.com/datasets/ocaktan/covid19pandemic-dataset/versions/6
    Explore at:
    CroissantCroissant is a format for machine-learning datasets. Learn more about this at mlcommons.org/croissant.
    Dataset updated
    May 23, 2021
    Dataset provided by
    Kagglehttp://kaggle.com/
    Authors
    Sinan Ocaktan
    Description

    Context

    This dataset is a product of a GitHub repository. Sources and methodology can be seen there step by step. Inconsistent values(negative increase etc.) are also explained there.

    Acknowledgements

    Most of the data in this dataset is taken from "COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University", here is the link for the repo.

    Covid-19 data of France are taken from "Ministère des Solidarités et de la Santé" (Ministry of Health in France).

    Population data are taken from United Nations. Here is the link for it.

    Inspiration

    I've needed to create a Covid-19 dataset for my Design Project at my university. Here is the dashboard as one of its products(out of date). For many reasons, I've faced a lot of problems during the processes. After I've finished it; I've decided to put the data collection part to Python, to create something that I can easily update and show the solutions of the problems that challenged me the most. The resulting dataset can be useful here.

  • C

    Allegheny County COVID-19 Tests, Cases and Deaths (Archive)

    • data.wprdc.org
    csv, html
    Updated Jun 13, 2024
    + more versions
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    Allegheny County (2024). Allegheny County COVID-19 Tests, Cases and Deaths (Archive) [Dataset]. https://data.wprdc.org/dataset/allegheny-county-covid-19-tests-cases-and-deaths
    Explore at:
    html, csv(34046863), csv(339166949), csv, csv(277234), csv(16109), csv(14904), csv(840)Available download formats
    Dataset updated
    Jun 13, 2024
    Dataset provided by
    Allegheny County
    License

    CC0 1.0 Universal Public Domain Dedicationhttps://creativecommons.org/publicdomain/zero/1.0/
    License information was derived automatically

    Area covered
    Allegheny County
    Description

    COVID-19 Cases information is reported through the Pennsylvania State Department’s National Electronic Disease Surveillance System (PA-NEDSS). As new cases are passed to the Allegheny County Health Department they are investigated by case investigators. During investigation some cases which are initially determined by the State to be in the Allegheny County jurisdiction may change, which can account for differences between publication of the files on the number of cases, deaths and tests. Additionally, information is not always reported to the State in a timely manner, delays can range from days to weeks, which can also account for discrepancies between previous and current files. Test and Case information will be updated daily. This resource contains individuals who received a COVID-19 test and individuals whom are probable cases. Every day, these records are overwritten with updates. Each row in the data reflects a person that is tested, not tests that are conducted. People that are tested more than once will have their testing and case data updated using the following rules:

    1. Positive tests overwrite negative tests.
    2. Polymerase chain reaction (PCR) tests overwrite antibody or antigen (AG) tests.
    3. The first positive PCR test is never overwritten. Data collected from additional tests do not replace the first positive PCR test.

    Note: On April 4th 2022 the Pennsylvania Department of Health no longer required labs to report negative AG tests. Therefore aggregated counts that included AG tests have been removed from the Municipality/Neighborhood files going forward. Versions of this data up to this cut-off have been retained as archived files.

    Individual Test information is also updated daily. This resource contains the details and results of individual tests along with demographic information of the individual tested. Only PCR and AG tests are included. Every day, these records are overwritten with updates. This resource should be used to determine positivity rates.

    The remaining datasets provide statistics on death demographics. Demographic, municipality and neighborhood information for deaths are reported on a weekly schedule and are not included with individual cases or tests. This has been done to protect the privacy and security of individuals and their families in accordance with the Health Insurance Portability and Accountability Act (HIPAA). Municipality or City of Pittsburgh Neighborhood is based off the geocoded home address of the individual tested.

    Individuals whose home address is incomplete may not be in Allegheny County but whose temporary residency, work or other mitigating circumstance are determined to be in Allegheny County by the Pennsylvania Department of Health are counted as "Undefined".

    Since the start of the pandemic, the ACHD has mapped every day’s COVID tests, cases, and deaths to their Allegheny County municipality and neighborhood. Tests were mapped to patient address, and if this was not available, to the provider location. This has recently resulted in apparent testing rates that exceeded the populations of various municipalities -- mostly those with healthcare providers. As this was brought to our attention, the health department and our data partners began researching and comparing methods to most accurately display the data. This has led us to leave those with missing home addresses off the map. Although these data will still appear in test, case and death counts, there will be over 20,000 fewer tests and almost 1000 fewer cases on the map. In addition to these map changes, we have identified specific health systems and laboratories that had data uploading errors that resulted in missing locations, and are working with them to correct these errors.

    Due to minor discrepancies in the Municipal boundary and the City of Pittsburgh Neighborhood files individuals whose City Neighborhood cannot be identified are be counted as “Undefined (Pittsburgh)”.

    On May 19, 2023, with the rescinding of the COVID-19 public health emergency, changes in data and reporting mechanisms prompted a change to an annual data sharing schedule for tests, cases, hospitalizations, and deaths. Dates for annual release are TBD. The weekly municipal counts and individual data produced before this changed are maintained as archive files.

    Support for Health Equity datasets and tools provided by Amazon Web Services (AWS) through their Health Equity Initiative.

  • COVID-19 Chest X-Ray Image Repository

    • figshare.com
    zip
    Updated May 30, 2023
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    Arman Haghanifar; Mahdiyar Molahasani Majdabadi; Seokbum Ko (2023). COVID-19 Chest X-Ray Image Repository [Dataset]. http://doi.org/10.6084/m9.figshare.12580328.v3
    Explore at:
    zipAvailable download formats
    Dataset updated
    May 30, 2023
    Dataset provided by
    figshare
    Authors
    Arman Haghanifar; Mahdiyar Molahasani Majdabadi; Seokbum Ko
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Dataset of publicly available images from COVID-19 positive patients collected from several sources over the net. All images are chest x-rays from frontal view (AP or PA). There is a ZIP file containing 900 images and a metadata in CSV format which includes information about 452 images.Note that some of the images are from pediatrics and/or from early-stage patients with no specific image findings noted by the radiologist; but all of them are from COVID-positive cases. Related guideline and details are available in the GitHub repo.

  • Weekly United States COVID-19 Hospitalization Metrics by Jurisdiction –...

    • healthdata.gov
    • data.virginia.gov
    • +1more
    application/rdfxml +5
    Updated Jul 11, 2023
    + more versions
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    data.cdc.gov (2023). Weekly United States COVID-19 Hospitalization Metrics by Jurisdiction – ARCHIVED [Dataset]. https://healthdata.gov/dataset/Weekly-United-States-COVID-19-Hospitalization-Metr/i9k6-47up
    Explore at:
    json, csv, application/rdfxml, application/rssxml, tsv, xmlAvailable download formats
    Dataset updated
    Jul 11, 2023
    Dataset provided by
    data.cdc.gov
    Area covered
    United States
    Description

    Note: After May 3, 2024, this dataset will no longer be updated because hospitals are no longer required to report data on COVID-19 hospital admissions, hospital capacity, or occupancy data to HHS through CDC’s National Healthcare Safety Network (NHSN). The related CDC COVID Data Tracker site was revised or retired on May 10, 2023.

    This dataset represents weekly COVID-19 hospitalization data and metrics aggregated to national, state/territory, and regional levels. COVID-19 hospitalization data are reported to CDC’s National Healthcare Safety Network, which monitors national and local trends in healthcare system stress, capacity, and community disease levels for approximately 6,000 hospitals in the United States. Data reported by hospitals to NHSN and included in this dataset represent aggregated counts and include metrics capturing information specific to COVID-19 hospital admissions, and inpatient and ICU bed capacity occupancy.

    Reporting information:

    • As of December 15, 2022, COVID-19 hospital data are required to be reported to NHSN, which monitors national and local trends in healthcare system stress, capacity, and community disease levels for approximately 6,000 hospitals in the United States. Data reported by hospitals to NHSN represent aggregated counts and include metrics capturing information specific to hospital capacity, occupancy, hospitalizations, and admissions. Prior to December 15, 2022, hospitals reported data directly to the U.S. Department of Health and Human Services (HHS) or via a state submission for collection in the HHS Unified Hospital Data Surveillance System (UHDSS).
    • While CDC reviews these data for errors and corrects those found, some reporting errors might still exist within the data. To minimize errors and inconsistencies in data reported, CDC removes outliers before calculating the metrics. CDC and partners work with reporters to correct these errors and update the data in subsequent weeks.
    • Many hospital subtypes, including acute care and critical access hospitals, as well as Veterans Administration, Defense Health Agency, and Indian Health Service hospitals, are included in the metric calculations provided in this report. Psychiatric, rehabilitation, and religious non-medical hospital types are excluded from calculations.
    • Data are aggregated and displayed for hospitals with the same Centers for Medicare and Medicaid Services (CMS) Certification Number (CCN), which are assigned by CMS to counties based on the CMS Provider of Services files.
    • Full details on COVID-19 hospital data reporting guidance can be found here: https://www.hhs.gov/sites/default/files/covid-19-faqs-hospitals-hospital-laboratory-acute-care-facility-data-reporting.pdf

    Metric details:

    • Time Period: timeseries data will update weekly on Mondays as soon as they are reviewed and verified, usually before 8 pm ET. Updates will occur the following day when reporting coincides with a federal holiday. Note: Weekly updates might be delayed due to delays in reporting. All data are provisional. Because these provisional counts are subject to change, including updates to data reported previously, adjustments can occur. Data may be updated since original publication due to delays in reporting (to account for data received after a given Thursday publication) or data quality corrections.
    • New COVID-19 Hospital Admissions (count): Number of new admissions of patients with laboratory-confirmed COVID-19 in the previous week (including both adult and pediatric admissions) in the entire jurisdiction.
    • New COVID-19 Hospital Admissions (7-Day Average): 7-day average of new admissions of patients with laboratory-confirmed COVID-19 in the previous week (including both adult and pediatric admissions) in the entire jurisdiction.
    • Cumulative COVID-19 Hospital Admissions: Cumulative total number of admissions of patients with labo

  • o

    Data from: Governments' Responses to COVID-19 (Response2covid19)

    • openicpsr.org
    • catalog.midasnetwork.us
    • +1more
    stata
    Updated Apr 21, 2020
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    Simon Porcher (2020). Governments' Responses to COVID-19 (Response2covid19) [Dataset]. http://doi.org/10.3886/E119061V6
    Explore at:
    stataAvailable download formats
    Dataset updated
    Apr 21, 2020
    Dataset provided by
    IAE Paris - Université Paris I Panthéon-Sorbonne
    Authors
    Simon Porcher
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Jan 1, 2020 - Oct 1, 2020
    Area covered
    World
    Description

    The Response2covid19 dataset tracks governments’ responses to COVID-19 all around the world. The dataset is at the country-level and covers the January-October 2020 period; it is updated on a monthly basis. It tracks 20 measures – 13 public health measures and 7 economic measures – taken by 228 governments. The tracking of the measures allows creating an index of the rigidity of public health measures and an index of economic response to the pandemic. The objective of the dataset is both to inform citizens and to help researchers and governments in fighting the pandemic.The dataset can be downloaded and used freely. Please properly cite the name of the dataset (“Governments’ Responses to COVID-19 (Response2covid19)”) and the reference: Porcher, Simon "A novel dataset of governments' responses to COVID-19 all around the world", Chaire EPPP 2020-03 discussion paper, 2020.

  • d

    COVID-19-Associated Deaths by Date of Death - ARCHIVE

    • datasets.ai
    • data.ct.gov
    • +1more
    23, 40, 55, 8
    Updated Aug 27, 2024
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    State of Connecticut (2024). COVID-19-Associated Deaths by Date of Death - ARCHIVE [Dataset]. https://datasets.ai/datasets/covid-19-associated-deaths-by-date-of-death
    Explore at:
    8, 55, 40, 23Available download formats
    Dataset updated
    Aug 27, 2024
    Dataset authored and provided by
    State of Connecticut
    Description

    Note: DPH is updating and streamlining the COVID-19 cases, deaths, and testing data. As of 6/27/2022, the data will be published in four tables instead of twelve.

    The COVID-19 Cases, Deaths, and Tests by Day dataset contains cases and test data by date of sample submission. The death data are by date of death. This dataset is updated daily and contains information back to the beginning of the pandemic. The data can be found at https://data.ct.gov/Health-and-Human-Services/COVID-19-Cases-Deaths-and-Tests-by-Day/g9vi-2ahj.

    The COVID-19 State Metrics dataset contains over 93 columns of data. This dataset is updated daily and currently contains information starting June 21, 2022 to the present. The data can be found at https://data.ct.gov/Health-and-Human-Services/COVID-19-State-Level-Data/qmgw-5kp6 .

    The COVID-19 County Metrics dataset contains 25 columns of data. This dataset is updated daily and currently contains information starting June 16, 2022 to the present. The data can be found at https://data.ct.gov/Health-and-Human-Services/COVID-19-County-Level-Data/ujiq-dy22 .

    The COVID-19 Town Metrics dataset contains 16 columns of data. This dataset is updated daily and currently contains information starting June 16, 2022 to the present. The data can be found at https://data.ct.gov/Health-and-Human-Services/COVID-19-Town-Level-Data/icxw-cada . To protect confidentiality, if a town has fewer than 5 cases or positive NAAT tests over the past 7 days, those data will be suppressed.

    Count of COVID-19-associated deaths by date of death. Deaths reported to either the OCME or DPH are included in the COVID-19 data. COVID-19-associated deaths include persons who tested positive for COVID-19 around the time of death and persons who were not tested for COVID-19 whose death certificate lists COVID-19 disease as a cause of death or a significant condition contributing to death.

    Data on Connecticut deaths were obtained from the Connecticut Deaths Registry maintained by the DPH Office of Vital Records. Cause of death was determined by a death certifier (e.g., physician, APRN, medical examiner) using their best clinical judgment. Additionally, all COVID-19 deaths, including suspected or related, are required to be reported to OCME. On April 4, 2020, CT DPH and OCME released a joint memo to providers and facilities within Connecticut providing guidelines for certifying deaths due to COVID-19 that were consistent with the CDC’s guidelines and a reminder of the required reporting to OCME.25,26 As of July 1, 2021, OCME had reviewed every case reported and performed additional investigation on about one-third of reported deaths to better ascertain if COVID-19 did or did not cause or contribute to the death. Some of these investigations resulted in the OCME performing postmortem swabs for PCR testing on individuals whose deaths were suspected to be due to COVID-19, but antemortem diagnosis was unable to be made.31 The OCME issued or re-issued about 10% of COVID-19 death certificates and, when appropriate, removed COVID-19 from the death certificate. For standardization and tabulation of mortality statistics, written cause of death statements made by the certifiers on death certificates are sent to the National Center for Health Statistics (NCHS) at the CDC which assigns cause of death codes according to the International Causes of Disease 10th Revision (ICD-10) classification system.25,26 COVID-19 deaths in this report are defined as those for which the death certificate has an ICD-10 code of U07.1 as either a primary (underlying) or a contributing cause of death. More information on COVID-19 mortality can be found at the following link: https://portal.ct.gov/DPH/Health-Information-Systems--Reporting/Mortality/Mortality-Statistics

    Note the counts in this dataset may vary from the death counts in the other COVID-19-related datasets published on data.ct.gov, where deaths are counted on the date reported rather than the date of death

  • Data from: Five Years of COVID-19 Discourse on Instagram: A Labeled...

    • zenodo.org
    bin
    Updated Oct 21, 2024
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    Nirmalya Thakur, Ph.D.; Nirmalya Thakur, Ph.D. (2024). Five Years of COVID-19 Discourse on Instagram: A Labeled Instagram Dataset of Over Half a Million Posts for Multilingual Sentiment Analysis [Dataset]. http://doi.org/10.5281/zenodo.13896353
    Explore at:
    binAvailable download formats
    Dataset updated
    Oct 21, 2024
    Dataset provided by
    Zenodohttp://zenodo.org/
    Authors
    Nirmalya Thakur, Ph.D.; Nirmalya Thakur, Ph.D.
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Oct 6, 2024
    Description

    Please cite the following paper when using this dataset:

    N. Thakur, “Five Years of COVID-19 Discourse on Instagram: A Labeled Instagram Dataset of Over Half a Million Posts for Multilingual Sentiment Analysis”, Proceedings of the 7th International Conference on Machine Learning and Natural Language Processing (MLNLP 2024), Chengdu, China, October 18-20, 2024 (Paper accepted for publication, Preprint available at: https://arxiv.org/abs/2410.03293)

    Abstract

    The outbreak of COVID-19 served as a catalyst for content creation and dissemination on social media platforms, as such platforms serve as virtual communities where people can connect and communicate with one another seamlessly. While there have been several works related to the mining and analysis of COVID-19-related posts on social media platforms such as Twitter (or X), YouTube, Facebook, and TikTok, there is still limited research that focuses on the public discourse on Instagram in this context. Furthermore, the prior works in this field have only focused on the development and analysis of datasets of Instagram posts published during the first few months of the outbreak. The work presented in this paper aims to address this research gap and presents a novel multilingual dataset of 500,153 Instagram posts about COVID-19 published between January 2020 and September 2024. This dataset contains Instagram posts in 161 different languages. After the development of this dataset, multilingual sentiment analysis was performed using VADER and twitter-xlm-roberta-base-sentiment. This process involved classifying each post as positive, negative, or neutral. The results of sentiment analysis are presented as a separate attribute in this dataset.

    For each of these posts, the Post ID, Post Description, Date of publication, language code, full version of the language, and sentiment label are presented as separate attributes in the dataset.

    The Instagram posts in this dataset are present in 161 different languages out of which the top 10 languages in terms of frequency are English (343041 posts), Spanish (30220 posts), Hindi (15832 posts), Portuguese (15779 posts), Indonesian (11491 posts), Tamil (9592 posts), Arabic (9416 posts), German (7822 posts), Italian (5162 posts), Turkish (4632 posts)

    There are 535,021 distinct hashtags in this dataset with the top 10 hashtags in terms of frequency being #covid19 (169865 posts), #covid (132485 posts), #coronavirus (117518 posts), #covid_19 (104069 posts), #covidtesting (95095 posts), #coronavirusupdates (75439 posts), #corona (39416 posts), #healthcare (38975 posts), #staysafe (36740 posts), #coronavirusoutbreak (34567 posts)

    The following is a description of the attributes present in this dataset

    • Post ID: Unique ID of each Instagram post
    • Post Description: Complete description of each post in the language in which it was originally published
    • Date: Date of publication in MM/DD/YYYY format
    • Language code: Language code (for example: “en”) that represents the language of the post as detected using the Google Translate API
    • Full Language: Full form of the language (for example: “English”) that represents the language of the post as detected using the Google Translate API
    • Sentiment: Results of sentiment analysis (using the preprocessed version of each post) where each post was classified as positive, negative, or neutral

    Open Research Questions

    This dataset is expected to be helpful for the investigation of the following research questions and even beyond:

    1. How does sentiment toward COVID-19 vary across different languages?
    2. How has public sentiment toward COVID-19 evolved from 2020 to the present?
    3. How do cultural differences affect social media discourse about COVID-19 across various languages?
    4. How has COVID-19 impacted mental health, as reflected in social media posts across different languages?
    5. How effective were public health campaigns in shifting public sentiment in different languages?
    6. What patterns of vaccine hesitancy or support are present in different languages?
    7. How did geopolitical events influence public sentiment about COVID-19 in multilingual social media discourse?
    8. What role does social media discourse play in shaping public behavior toward COVID-19 in different linguistic communities?
    9. How does the sentiment of minority or underrepresented languages compare to that of major world languages regarding COVID-19?
    10. What insights can be gained by comparing the sentiment of COVID-19 posts in widely spoken languages (e.g., English, Spanish) to those in less common languages?

    All the Instagram posts that were collected during this data mining process to develop this dataset were publicly available on Instagram and did not require a user to log in to Instagram to view the same (at the time of writing this paper).

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    data.cdc.gov (2022). Weekly United States COVID-19 Cases and Deaths by State - ARCHIVED [Dataset]. https://healthdata.gov/w/hiqp-x67x/default?cur=_65-WvB31Cw
    Organization logo

    Weekly United States COVID-19 Cases and Deaths by State - ARCHIVED

    Explore at:
    application/rssxml, application/rdfxml, csv, xml, json, tsvAvailable download formats
    Dataset updated
    Oct 21, 2022
    Dataset provided by
    data.cdc.gov
    Area covered
    United States
    Description

    Reporting of new Aggregate Case and Death Count data was discontinued May 11, 2023, with the expiration of the COVID-19 public health emergency declaration. This dataset will receive a final update on June 1, 2023, to reconcile historical data through May 10, 2023, and will remain publicly available.

    Aggregate Data Collection Process Since the start of the COVID-19 pandemic, data have been gathered through a robust process with the following steps:

    • A CDC data team reviews and validates the information obtained from jurisdictions’ state and local websites via an overnight data review process.
    • If more than one official county data source exists, CDC uses a comprehensive data selection process comparing each official county data source, and takes the highest case and death counts respectively, unless otherwise specified by the state.
    • CDC compiles these data and posts the finalized information on COVID Data Tracker.
    • County level data is aggregated to obtain state and territory specific totals.
    This process is collaborative, with CDC and jurisdictions working together to ensure the accuracy of COVID-19 case and death numbers. County counts provide the most up-to-date numbers on cases and deaths by report date. CDC may retrospectively update counts to correct data quality issues.

    Methodology Changes Several differences exist between the current, weekly-updated dataset and the archived version:

    • Source: The current Weekly-Updated Version is based on county-level aggregate count data, while the Archived Version is based on State-level aggregate count data.
    • Confirmed/Probable Cases/Death breakdown:  While the probable cases and deaths are included in the total case and total death counts in both versions (if applicable), they were reported separately from the confirmed cases and deaths by jurisdiction in the Archived Version.  In the current Weekly-Updated Version, the counts by jurisdiction are not reported by confirmed or probable status (See Confirmed and Probable Counts section for more detail).
    • Time Series Frequency: The current Weekly-Updated Version contains weekly time series data (i.e., one record per week per jurisdiction), while the Archived Version contains daily time series data (i.e., one record per day per jurisdiction).
    • Update Frequency: The current Weekly-Updated Version is updated weekly, while the Archived Version was updated twice daily up to October 20, 2022.
    Important note: The counts reflected during a given time period in this dataset may not match the counts reflected for the same time period in the archived dataset noted above. Discrepancies may exist due to differences between county and state COVID-19 case surveillance and reconciliation efforts.

    Confirmed and Probable Counts In this dataset, counts by jurisdiction are not displayed by confirmed or probable status. Instead, confirmed and probable cases and deaths are included in the Total Cases and Total Deaths columns, when available. Not all jurisdictions report probable cases and deaths to CDC.* Confirmed and probable case definition criteria are described here:

    Council of State and Territorial Epidemiologists (ymaws.com).

    Deaths CDC reports death data on other sections of the website: CDC COVID Data Tracker: Home, CDC COVID Data Tracker: Cases, Deaths, and Testing, and NCHS Provisional Death Counts. Information presented on the COVID Data Tracker pages is based on the same source (to

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