The Harvard-Emory ECG database (HEEDB) is a large collection of 12-lead electrocardiography (ECG) recordings, prepared through a collaboration between Harvard University and Emory University investigators.

In version 1.0 of the database, these ECGs from Massachusetts General Brigham hospital sites were provided without labels or metadata, to enable pre-training of ECG analysis models.

In version 2.0, metadata is included.

In version 3.0, Emory ECGs are included together with metadata, labels from the 12SL ECG analysis program (GE Healthcare ) and ICD-9/10 codes.

In version 4.0, typos were corrected in the data description.

HEEDB is published as part of the Human Sleep Project (HSP), funded by a grant (R01HL161253) from the National Heart Lung and Blood Institute (NHLBI) of the NIH to Massachusetts General Hospital, Emory University, Stanford University, Kaiser Permanente, Boston Children's Hospital, and Beth Israel Deaconess Medical Center.

This newly inaugurated research database for 12-lead electrocardiogram (ECG) signals was created under the auspices of Chapman University, Shaoxing People’s Hospital (Shaoxing Hospital Zhejiang University School of Medicine), and Ningbo First Hospital. It aims to enable the scientific community in conducting new studies on arrhythmia and other cardiovascular conditions. Certain types of arrhythmias, such as atrial fibrillation, have a pronounced negative impact on public health, quality of life, and medical expenditures. As a non-invasive test, ECG is a major and vital diagnostic tool for detecting these conditions. This practice, however, generates large amounts of data, the analysis of which requires considerable time and effort by human experts. Modern machine learning and statistical tools can be trained on high quality, large data to achieve exceptional levels of automated diagnostic accuracy. Thus, we collected and disseminated this novel database that contains 12-lead ECGs of 45,152 patients with a 500 Hz sampling rate that features multiple common rhythms and additional cardiovascular conditions, all labeled by professional experts. The dataset can be used to design, compare, and fine-tune new and classical statistical and machine learning techniques in studies focused on arrhythmia and other cardiovascular conditions.

This database contains a series of 55 multichannel abdominal non-invasive fetal electrocardiogram (FECG) recordings, taken from a single subject between 21 to 40 weeks of pregnancy. The records have variable durations, and were taken weekly (two or more records were acquired during some weeks). These records may be very useful for testing signal separation algorithms.

ECG images dataset of Cardiac Patients created under the auspices of Ch. Pervaiz Elahi Institute of Cardiology Multan, Pakistan that aims to help the scientific community for conducting the research for Cardiovascular diseases.

Abstract

The NCKU CBIC ECG database collects ECG data from 6 different patients. Each patient collects lead II ECG for four hours a day to highlight patients' different physiological meanings at different times of the day, and the database provides the labels for motion artifact and baseline wandering, which are invalid signal for diagnosis. Prevent physicians from using the noise signal to diagnose. These data were collected using Patch[1] at Tainan Hospital.

Background

Technology and medical treatment are highly developed in the 21st century, and people have more irregular daily routines and greater life pressure. Cardiovascular disease has become a tough nut to crack when the changing of lifestyle is coupled with the aging of society. The age distribution of patients is wider than ever. A wealth of health information can be obtained through electrocardiogram (ECG) measurement, including cardiac arrhythmias. Severe arrhythmias will lead to many life problems, including palpitations, chest tightness, dizziness, shock, and even life-threatening conditions. Therefore, the monitoring of ECG signal is quite essential.
To do our part in the study of arrhythmia, our team started the patient enrollment after gaining the permission of the National Cheng Kung University Hospital Institutional Review Board (NCKUH IRB No. B-ER-104-379) from 2018. We have selected total 128 patients' 24 hours ECG data until now. The results of the arrhythmia label are confirmed by the cardiologist Ju-Yi Chen in NCKUH. Finally, We selected 6 patients from the received signals and made them into a database for researchers to access.

Methods

The NCKU CBIC ECG database contains the ECG recordings from 6 subjects. The signals were collected in Tainan Hospital (Ministry of Health and Welfare) via an ECG acquisition device[1] developed by Your health technology Co., Ltd. The sampling frequency is 400Hz, and the ADC resolution is 12 bits. The age distribution of subjects was from 24 to 76 years old, and each patient was measured at the lead II for 24 hours. After the signal is recorded, four cleaner segments in the morning, noon, evening, and midnight are selected, and each segment is one hour long. The heartbeat of human body is different when sleeping and awake, and some arrhythmia type occurs at sleeping period often. It's hard to detect some arrhythmia at specific time of a day, therefore, we choose signal segments from different time period for a patient, which is more representative of the daily heartbeat condition. It's worth mentioning that the ECG signals from the 6th subject contains too many noise signals in the daytime due to his career type, so the segments from 22:00 to 02:00 are selected.
We have collected total 128 patients from Tainan Hospital since 2018. Since most of the ECG data of patients are normal beats, we finally selected the ECG data of six patients which contain clinically significant arrhythmia. The database provides two particular label type for motion artifact and baseline wandering, which are caused by body movement during ECG acquisition. In actual situations, cardiologist doesn't use the noise signals as a basis for diagnosis, therefore, these two specific labels prevent physicians from using noise to make a diagnosis. The original data is first compared with the holter report, and the R peak position and beat labels are manually marked. And then the data were given to a professional cardiologist, Ju-Yi, Chen, for verification. The cardiologist checked the correction and position of beat labels, and chose the acceptable signal segmentation for high quality.

Introduction of Ju-Yi, Chen :
JU-YI CHEN was born in Tainan, Taiwan, in 1974. He received the M.S. degree from Chang Gung University, Taoyuan City, Taiwan, in 1999 and the Ph.D. degree from the National Cheng Kung University, Tainan, in 2013. Since 2021, he has been a Professor at the Department of Internal Medicine, National Cheng Kung University. His current research interests include the cardiovascular diseases, including arrhythmias, hypertension, arterial stiffness, and cardiac implantable electric devices.

Data Description

The file structure and naming rule are described as follows : [The subject number]_[The measurement time] : The directory name

OUTPUT_ECG_data.csv : The one-hour ECG signals ( unit : 0.1V ) OUTPUT_peak_label.csv : The arrhythmia type label of R-peak OUTPUT_peak_position.csv : The position of R-peak

ex : 1_0100 directory contains subject No. 1's data which is measured at 01:00.

Arrhythmia diseases and the corresponding label codes :

Code Arrhythmia Disease ————————————————————— 0 Normal 1 Atrial Fibrillation 2 Supraventricular Tachycardia 3 Premature Ventricular Contraction 4 Atrial Premature Contraction 5 Motion Artifact 6 Wandering 7 First degree AV block 8 Atrial Flutter

PS : Wandering represents baseline drifted by 1mV.

Patient information :

Subject 1: Male，61 years Subject 2: Female，77 years Subject 3: Male，63 years Subject 4: Male，64 years Subject 5: Male，24 years Subject 6: Male，64 years

Usage Notes

Few public ECG databases provide long-term ECG, our goal in creating the database is to help understand what a person's ECG looks like in a day, and this database is more valuable in obtaining long-term ECG.

Ethics

Our team has cooperated with National Cheng Kung University Hospital and Tainan Hospital. All the patients enrolled gave their informed consent to participate in the study. The certification of safety-related IEC standards and human study approval are all acquired.

Conflicts of Interest The authors declare that there are no known conflicts of interest.

References

S.-Y. Lee, P.-W. Huang, M.-C. Liang, J.-H. Hong, and J.-Y. Chen, "Development of an arrhythmia monitoring system and human study," IEEE Transactions on Consumer Electronics, vol. 64, no. 4, pp. 442-451, 2018.

Apnea-ECG Database has been assembled for the PhysioNet/Computers in Cardiology Challenge 2000. It consists of 70 ECG recordings, each typically 8 hours long, with accompanying sleep apnea annotations obtained from study of simultaneously recorded respiration signals, which are included for 8 of the recordings.

------------------------------------------------------------------------------------------------------------- CITATION ------------------------------------------------------------------------------------------------------------- Please cite this data and code as: H. Khamis, R. Weiss, Y. Xie, C-W. Chang, N. H. Lovell, S. J. Redmond, "QRS detection algorithm for telehealth electrocardiogram recordings," IEEE Transaction in Biomedical Engineering, vol. 63(7), p. 1377-1388, 2016. ------------------------------------------------------------------------------------------------------------- DATABASE DESCRIPTION ------------------------------------------------------------------------------------------------------------- The following description of the TELE database is from Khamis et al (2016): "In Redmond et al (2012), 300 ECG single lead-I signals recorded in a telehealth environment are described. The data was recorded using the TeleMedCare Health Monitor (TeleMedCare Pty. Ltd. Sydney, Australia). This ECG is sampled at a rate of 500 Hz using dry metal Ag/AgCl plate electrodes which the patient holds with each hand; a reference electrode plate is also positioned under the pad of the right hand. Of the 300 recordings, 250 were selected randomly from 120 patients, and the remaining 50 were manually selected from 168 patients to obtain a larger representation of poor quality data. Three independent scorers annotated the data by identifying sections of artifact and QRS complexes. All scorers then annotated the signals as a group, to reconcile the individual annotations. Sections of the ECG signal which were less than 5 s in duration were considered to be part of the neighboring artifact sections and were subsequently masked. QRS annotations in the masked regions were discarded prior to the artifact mask and QRS locations being saved. Of the 300 telehealth ECG records in Redmond et al. (2012), 50 records (including 29 of the 250 randomly selected records and 21 of the 50 manually selected records) were discarded as all annotated RR intervals within these records overlap with the annotated artifact mask and therefore, no heart rate can be calculated, which is required for measuring algorithm performance. The remaining 250 records will be referred to as the TELE database." For all 250 recordings in the TELE database, the mains frequency was 50 Hz, the sampling frequency was 500 Hz and the top and bottom rail voltages were 5.556912223578890 and -5.554198887532222 mV respectively. ------------------------------------------------------------------------------------------------------------- DATA FILE DESCRIPTION ------------------------------------------------------------------------------------------------------------- Each record in the TELE database is stored as a X_Y.dat file where X indicates the index of the record in the TELE database (containing a total of 250 records) and Y indicates the index of the record in the original dataset containing 300 records (see Redmond et al. 2012). The .dat file is a comma separated values file. Each line contains: - the ECG sample value (mV) - a boolean indicating the locations of the annotated qrs complexes - a boolean indicating the visually determined mask - a boolean indicating the software determined mask (see Khamis et al. 2016) ------------------------------------------------------------------------------------------------------------- CONVERTING DATA TO MATLAB STRUCTURE ------------------------------------------------------------------------------------------------------------- A matlab function (readFromCSV_TELE.m) has been provided to read the .dat files into a matlab structure: %% % [DB,fm,fs,rail_mv] = readFromCSV_TELE(DATA_PATH) % % Extracts the data for each of the 250 telehealth ECG records of the TELE database [1] % and returns a structure containing all data, annotations and masks. % % IN: DATA_PATH - String. The path containing the .hdr and .dat files % % OUT: DB - 1xM Structure. Contains the extracted data from the M (250) data files. % The structure has fields: % * data_orig_ind - 1x1 double. The index of the data file in the original dataset of 300 records (see [1]) - for tracking purposes. % * ecg_mv - 1xN double. The ecg samples (mV). N is the number of samples for the data file. % * qrs_annotations - 1xN double. The qrs complexes - value of 1 where a qrs is located and 0 otherwise. % * visual_mask - 1xN double. The visually determined artifact mask - value of 1 where the data is masked and 0 otherwise. % * software_mask - 1xN double. The software artifact mask - value of 1 where the data is masked and 0 otherwise. % fm - 1x1 double. The mains frequency (Hz) % fs - 1x1 double. The sampling frequency (Hz) % rail_mv - 1x2 double. The bottom and top rail voltages (mV) % % If you use this code or data, please cite as follows: % % [1] H. Khamis, R. Weiss, Y. Xie, C-W. Chang, N. H. Lovell, S. J. Redmond, % "QRS detection algorithm...

Saitama Heart Database Atrial Fibrillation (SHDB-AF) is a novel open-sourced Holter ECG database from Japan, containing data from 122 unique subjects with paroxysmal atrial fibrillation. Among the 128 recordings, 98 contain raw ECG data with rhythm annotations at the beat level, manually performed by a cardiology fellow. The remaining recordings consist only of ECG traces without annotations. The dataset was collected as part of a study evaluating the generalization performance of a deep learning atrial fibrillation event detection model across different distribution shifts.

The dataset presents the collection of a diverse electrocardiogram (ECG) database for testing and evaluating ECG digitization solutions. The Powerful Medical ECG image database was curated using 100 ECG waveforms selected from the PTB-XL Digital Waveform Database and various images generated from the base waveforms with varying lead visibility and real-world paper deformations, including the use of different mobile phones, bends, crumbles, scans, and photos of computer screens with ECGs. The ECG waveforms were augmented using various techniques, including changes in contrast, brightness, perspective transformation, rotation, image blur, JPEG compression, and resolution change. This extensive approach yielded 6,000 unique entries, which provides a wide range of data variance and extreme cases to evaluate the limitations of ECG digitization solutions and improve their performance, and serves as a benchmark to evaluate ECG digitization solutions.

PM-ECG-ID database contains electrocardiogram (ECG) images and their corresponding ECG information. The data records are organized in a hierarchical folder structure, which includes metadata, waveform data, and visual data folders. The contents of each folder are described below:

• metadata.csv:
  This file serves as a key-to-key bridge between the image data and the corresponding ECG information. It contains the following columns:
  • Image name: image name with extension,
  • ECG ID: this ID corresponds to the specific ECG identifier from the original PTB-XL dataset. Under this ID you can find a cutout array in the leads.npz and rhythms.npz,
  • Image relative path: relative path to the image in question,
  • Image page: page number of the particular image (starting from 0),
  • ECG number of pages: number of pages in the whole ECG,
  • ECG number of columns per page: number of columns per page in the ECG,
  • ECG number of rows per page: number of rows in the ECG,
  • ECG number of rhythm leads: number of rhythms in the ECG,
  • ECG format: short version of the ECG format.
• data folder:
  • leads.npz: NPZ file containing all underlying cutout lead signals; each signal is there under its ECG ID.
  • rhythms.npz: NPZ file containing all underlying rhythm signals; each signal is there under its ECG ID. If no rhythm lead is in the ECG, you will find an empty array in the NPZ.
• visual_data folder:
  This folder contains subfolders for various image data, including augmented photos and visualization and different types of photos of ECG printouts. The subfolders are organized based on the specific augmentation or type of photograph. These folders contain images with various augmentation settings, such as different levels of blur, brightness, contrast, padding, perspective transformation, resolution scaling, and rotation. The database is organized in a way that allows for easy navigation and understanding of the different augmentations applied to the image data. Each of these subfolders contains images relevant to the specific augmentation or type of photograph. The metadata.csv file provides a direct link to each image and its associated ECG information.

The database contains 310 ECG recordings, obtained from 90 persons. Each recording contains:

ECG lead I, recorded for 20 seconds, digitized at 500 Hz with 12-bit resolution over a nominal ±10 mV range;
10 annotated beats (unaudited R- and T-wave peaks annotations from an automated detector);
information (in the .hea file for the record) containing age, gender and recording date.

AbstractThe NCKU CBIC ECG database collects ECG data from 6 different patients. The patients information have been processed for anonymization, and each patient has signed a consent form to ensure the legitimacy of data usage. Each patient collects lead II ECG for four hours a day to highlight patients' different physiological meanings at different times of the day, and the database provides the labels for motion artifact and baseline wandering, which are invalid signal for diagnosis. Prevent physicians from using the noise signal to diagnose. These data were collected using Patch[1] at Ministry of Health and Welfare Tainan Hospital, and the included data have been approved by the Institutional Review Board (IRB).BackgroundTechnology and medical treatment are highly developed in the 21st century, and people have more irregular daily routines and greater life pressure. Cardiovascular disease has become a tough nut to crack when the changing of lifestyle is coupled with the aging of society. The age distribution of patients is wider than ever. A wealth of health information can be obtained through electrocardiogram (ECG) measurement, including cardiac arrhythmias. Severe arrhythmias will lead to many life problems, including palpitations, chest tightness, dizziness, shock, and even life-threatening conditions. Therefore, the monitoring of ECG signal is quite essential.To do our part in the study of arrhythmia, our team started the patient enrollment after gaining the permission of the National Cheng Kung University Hospital Institutional Review Board (NCKUH IRB No. B-ER-104-379) from 2018. We have selected total 128 patients' 24 hours ECG data until now. The results of the arrhythmia label are confirmed by the cardiologist Ju-Yi Chen in NCKUH. Finally, We selected 6 patients from the received signals and made them into a database for researchers to access.MethodsThe NCKU CBIC ECG database contains the ECG recordings from 6 subjects. The signals were collected in Tainan Hospital (Ministry of Health and Welfare) via an ECG acquisition device[1] developed by Your health technology Co., Ltd. The sampling frequency is 400Hz, and the ADC resolution is 12 bits.The age distribution of subjects was from 24 to 76 years old, and each patient was measured at the lead II for 24 hours. After the signal is recorded, four cleaner segments in the morning, noon, evening, and midnight are selected, and each segment is one hour long. The heartbeat of human body is different when sleeping and awake, and some arrhythmia type occurs at sleeping period often. It's hard to detect some arrhythmia at specific time of a day, therefore, we choose signal segments from different time period for a patient, which is more representative of the daily heartbeat condition. It's worth mentioning that the ECG signals from the 6th subject contains too many noise signals in the daytime due to his career type, so the segments from 22:00 to 02:00 are selected.We have collected total 128 patients from Tainan Hospital since 2018. Since most of the ECG data of patients are normal beats, we finally selected the ECG data of six patients which contain clinically significant arrhythmia. The database provides two particular label type for motion artifact and baseline wandering, which are caused by body movement during ECG acquisition. In actual situations, cardiologist doesn't use the noise signals as a basis for diagnosis, therefore, these two specific labels prevent physicians from using noise to make a diagnosis.The original data is first compared with the holter report, and the R peak position and beat labels are manually marked. And then the data were given to a professional cardiologist, Ju-Yi, Chen, for verification. The cardiologist checked the correction and position of beat labels, and chose the acceptable signal segmentation for high quality.Introduction of Ju-Yi, Chen :JU-YI CHEN was born in Tainan, Taiwan, in 1974. He received the M.S. degree from Chang Gung University, Taoyuan City, Taiwan, in 1999 and the Ph.D. degree from the National Cheng Kung University, Tainan, in 2013. Since 2021, he has been a Professor at the Department of Internal Medicine, National Cheng Kung University. His current research interests include the cardiovascular diseases, including arrhythmias, hypertension, arterial stiffness, and cardiac implantable electric devices.Data DescriptionThe file structure and naming rule are described as follows :[The subject number]_[The measurement time] : The directory nameOUTPUT_ECG_data.csv : The one-hour ECG signals ( unit : 0.1V )OUTPUT_peak_label.csv : The arrhythmia type label of R-peakOUTPUT_peak_position.csv : The position of R-peakex : 1_0100 directory contains subject No. 1's data which is measured at 01:00.Arrhythmia diseases and the corresponding label codes :Code Arrhythmia Disease—————————————————————0 Normal1 Atrial Fibrillation2 Supraventricular Tachycardia3 Premature Ventricular Contraction4 Atrial Premature Contraction5 Motion Artifact6 Wandering7 First degree AV block8 Atrial FlutterPS : Wandering represents baseline drifted by 1mV.Patient information :Subject 1: Male，61 yearsSubject 2: Female，77 yearsSubject 3: Male，63 yearsSubject 4: Male，64 yearsSubject 5: Male，24 yearsSubject 6: Male，64 yearsUsage NotesFew public ECG databases provide long-term ECG, our goal in creating the database is to help understand what a person's ECG looks like in a day, and this database is more valuable in obtaining long-term ECG.EthicsOur team has cooperated with National Cheng Kung University Hospital and Tainan Hospital. All the patients enrolled gave their informed consent to participate in the study. The certification of safety-related IEC standards and human study approval are all acquired.Conflicts of InterestThe authors declare that there are no known conflicts of interest.ReferencesS.-Y. Lee, P.-W. Huang, M.-C. Liang, J.-H. Hong, and J.-Y. Chen, "Development of an arrhythmia monitoring system and human study," IEEE Transactions on Consumer Electronics, vol. 64, no. 4, pp. 442-451, 2018.

These are 7 electrocardiograms (EKGs or ECGs) from 7 patients that are roughly 14-22 hours each. These were recorded as part of a joint effort between MIT and Beth Israel Hospital in Boston, MA, and are one of dozens of datasets with electrocardiogram data.

These EKGs are CSVs of voltage data from real hearts in real people with varying states of health.

What is an electrocardiogram or a 12-lead EKG?

EKGs, or electrocardiograms, measure the heart's function by looking at its electrical activity. The electrical activity in each part of the heart is supposed to happen in a particular order and intensity, creating that classic "heartbeat" line (or "QRS complex") you see on monitors in medical TV shows. Every part of this line is psupposed to be a specific height, width, and distance from each other](https://www.youtube.com/watch?v=CNN30YHsJw0) in a theoretically "healthy" heartbeat.

There are a few types of EKGs (4-lead, 5-lead, 12-lead, etc.), which give us varying detail about the heart. A 12-lead is one of the most detailed types of EKGs, as it allows us to get 12 different outputs or graphs, all looking at different, specific parts of the heart muscles. If you were to take two leads of the EKG (two physical wires) and draw an imaginary line in between them going through the patient's chest, whichever part of the heart muscle that this line goes through is the part of the heart that the lead is "reading" voltage from.

This dataset only publishes two leads from each patient's 12-lead EKG, since that is all that the original MIT-BIH database provided.

Files

Each patient has 6 files:

• 12345_ekg.csv - The 14- to 22-hour electrocardiogram as two channels of voltage measurements (millivolts) for one patient, with the locations of annotations as an additional column
• 12345_ekg.json - The 14- to 22-hour electrocardiogram, plus metadata, like sample rate, patient age, patient gender, etc.
• 12345_annotations.csv - The locations of miscellaneous annotations made by doctors or EKG technicians. See annotation_symbols.csv for the annotations' meanings.
• 12345_annotations.json - The same data as 12345_annotations.csv in addition to metadata

To get started, you will probably want the *_ekg.csv files. Generally, the .csv files have just the voltage data and the locations of annotations made by doctors/technicians. The .json files have all of that data in addition to metadata (such as sample rate, ADC gain, patient age, and more).

Notebooks

• How to open and graph the data
• How to find peaks and valleys in digital signals (includes non-EKG data)
• How to smooth and filter digital signals (includes non-EKG data)

Sample rate

The data was collected at 128 Hz (or 128 samples per second). This means that if you get the first 128 elements from the EKG array, you have 1 second of heartbeat data.

What is a "QRS complex"?

A "QRS complex" is the big spike in the classic heartbeat blip that you may see on your smartwatch or in a hospital show on TV.

In this dataset, doctors and EKG technicians have labeled the locations of the complexes, and by extension the location of each heartbeat. This can help you not only identify Q, R, and S waves right away, but also help feed these heartbeats into hand-written or machine learning algorithms to start identifying and classifying heartbeats--though this only one of many datasets you might want to train an algorithm on, since there are hundreds of types of arrhythmias](https://litfl.com/ecg-library/diagnosis/) (or "bad" heart rhythms).

What does each part of the QRS complex mean?

Check out Ninja Nerd's EKG Basics tutorial on YouTube to understand what each part of the QRS complex (or heartbeat) means from an electrical standpoint.

The EKG channels

Typically, electrocardiogram datasets will specify which channels from the 12-lead EKG that the data came from. For example, the EKG for patient 100 from our other MIT-BIH Arrhythmia Database dataset came with two channels: Lead II and V5. Other EKGs in the many MIT-BIH EKG datasets may have channels Lead I and V4, or Lead II and V2, and so on.

For some reason, the channels in this dataset were not labeled with the actual 12-lead EKG ch...

A beginner-friendly version of the MIT-BIH Arrhythmia Database, which contains 48 electrocardiograms (EKGs) from 47 patients that were at Beth Israel Deaconess Medical Center in Boston, MA in 1975-1979.

Update (7/18/2025)

This data was updated to a new format on 7/18/2025 with new filenames. Now heartbeats are labeled and their annotations are in new CSV and JSON files. This means that each patient's EKG file is now named {id}_ekg.csv and they have accompanying heartbeat annotation files, named {id}_annotations.csv. For example, if your code used to open 100.csv, it should be changed to opening 100_ekg.csv.

Filenames

Each of the 48 EKGs has the following files (using patient 100 as an example): - 100_ekg.csv - a 30-minute EKG recording from one patient with 2 EKG channels. This also contains annotations (the symbol column), where doctors have marked and classified heartbeats as normal or abnormal. - 100_ekg.json - the 30-minute EKG with all of its metadata. It has all of the same data as the CSV file in addition to frequency/sample rate info and more. - 100_annotations.csv - the labels for the heartbeats, where doctors have manually classified each heartbeat as normal as one of dozens of types of arrhythmias. There may be multiple of these files (number 1, 2, or 3), since the original MIT-BIH Arrhythmia Database had multiple .atr files for some patients. The MIT-BIH DB did not elaborate on why, though the differences between each annotation file seems to be only a few lines at most. - 100_annotations.json - the annotation file that is as close to the original as possible, keeping all of its metadata, while being an easy to use JSON file (as opposed to an .atr file, which requires the WFDB library to open).

Other files: - annotation_symbols.csv - contains the meanings of the annotation symbols

There are 48 EKGs for 47 patients, each of which is a 30-minute echocardiogram (EKG) from a single patient. (Record 201 and 202 are from the same patient). Data was collected at 360 Hz, meaning that 360 data points is equal to 1 second of time.

Each file's name starts with the ID of the patient (except for 201 and 202, which are the same person).

Related Data

The P-waves were labeled by doctors and technicians, and their exact indices are available in the accompanying dataset, MIT-BIH Arrhythmia Database P-wave Annotations.

How to Analyze the Heart with Python

1. How to Analyze Heartbeats in 15 Minutes with Python
2. How the Heart Works (and What is a "QRS" Complex?)
3. How to Identify and Label the Waves of an EKG
4. How to Flatten a Wandering EKG
5. How to Calculate the Heart Rate

What is a 12-lead EKG?

EKGs, or electrocardiograms, measure the heart's function by looking at its electrical activity. The electrical activity in each part of the heart is supposed to happen in a particular order and intensity, creating that classic "heartbeat" line (or "QRS complex") you see on monitors in medical TV shows.

There are a few types of EKGs (4-lead, 5-lead, 12-lead, etc.), which give us varying detail about the heart. A 12-lead is one of the most detailed types of EKGs, as it allows us to get 12 different outputs or graphs, all looking at different, specific parts of the heart muscles.

This dataset only publishes two leads from each patient's 12-lead EKG, since that is all that the original MIT-BIH database provided.

What does each part of the QRS complex mean?

Check out Ninja Nerd's EKG Basics tutorial on YouTube to understand what each part of the QRS complex (or heartbeat) means from an electrical standpoint.

Columns

• index
• the first lead
• the second lead

The two leads are often lead MLII and another lead such as V1, V2, or V5, though some datasets do not use MLII at all. MLII is the lead most often associated with the classic QRS Complex (the medical name for a single heartbeat).

Patient information

Info about [each of the 47 patients is available here](https://physionet.org/phys...

ECG images dataset of Cardiac and COVID-19 Patients created under the auspices of Ch. Pervaiz Elahi Institute of Cardiology Multan, Pakistan that aims to help the scientific community for conducting the research for COVID-19 and Cardiovascular diseases.

The Physikalisch-Technische Bundesanstalt (PTB) Diagnostic ECG database contains 549 12-lead records.

The MIT-BIH Arrhythmia Database contains 48 half-hour excerpts of two-channel ambulatory ECG recordings, obtained from 47 subjects studied by the BIH Arrhythmia Laboratory between 1975 and 1979. Twenty-three recordings were chosen at random from a set of 4000 24-hour ambulatory ECG recordings collected from a mixed population of inpatients (about 60%) and outpatients (about 40%) at Boston's Beth Israel Hospital; the remaining 25 recordings were selected from the same set to include less common but clinically significant arrhythmias that would not be well-represented in a small random sample.

This dataset is a limited subset of the Physionet Abdominal and Direct Fetal Electrocardiogram Database in CSV format (instead of EDF version of the original Physionet database). It contains multichannel fetal electrocardiogram (FECG) recordings obtained from 5 different women in labor, between 38 and 41 weeks of gestation. Each recording comprises 10001 readings from four differential signals acquired from maternal abdomen and the reference direct fetal electrocardiogram registered from the fetal head.

The data consist of 70 records, divided into a learning set of 35 records (a01 through a20, b01 through b05, and c01 through c10), and a test set of 35 records (x01 through x35), all of which may be downloaded from this page. Recordings vary in length from slightly less than 7 hours to nearly 10 hours each. Each recording includes a continuous digitized ECG signal, a set of apnea annotations (derived by human experts on the basis of simultaneously recorded respiration and related signals), and a set of machine-generated QRS annotations (in which all beats regardless of type have been labeled normal). In addition, eight recordings (a01 through a04, b01, and c01 through c03) are accompanied by four additional signals (Resp C and Resp A, chest and abdominal respiratory effort signals obtained using inductance plethysmography; Resp N, oronasal airflow measured using nasal thermistors; and SpO2, oxygen saturation).

Short duration ECG signals are recorded from a healthy 25-year-old male performing different physical activities to study the effect of motion artifacts on ECG signals and their sparsity.

Annotated 12 lead ECG dataset

Contain 827 ECG tracings from different patients, annotated by several cardiologists, residents and medical students. It is used as test set on the paper: "Automatic diagnosis of the 12-lead ECG using a deep neural network". https://www.nature.com/articles/s41467-020-15432-4.

It contain annotations about 6 different ECGs abnormalities: - 1st degree AV block (1dAVb); - right bundle branch block (RBBB); - left bundle branch block (LBBB); - sinus bradycardia (SB); - atrial fibrillation (AF); and, - sinus tachycardia (ST).

Companion python scripts are available in: https://github.com/antonior92/automatic-ecg-diagnosis

Citation Ribeiro, A.H., Ribeiro, M.H., Paixão, G.M.M. et al. Automatic diagnosis of the 12-lead ECG using a deep neural network. Nat Commun 11, 1760 (2020). https://doi.org/10.1038/s41467-020-15432-4

Bibtex: ``` @article{ribeiro_automatic_2020, title = {Automatic Diagnosis of the 12-Lead {{ECG}} Using a Deep Neural Network}, author = {Ribeiro, Ant{^o}nio H. and Ribeiro, Manoel Horta and Paix{~a}o, Gabriela M. M. and Oliveira, Derick M. and Gomes, Paulo R. and Canazart, J{\'e}ssica A. and Ferreira, Milton P. S. and Andersson, Carl R. and Macfarlane, Peter W. and Meira Jr., Wagner and Sch{"o}n, Thomas B. and Ribeiro, Antonio Luiz P.}, year = {2020}, volume = {11}, pages = {1760}, doi = {https://doi.org/10.1038/s41467-020-15432-4}, journal = {Nature Communications}, number = {1} }

```

Folder content:

• ecg_tracings.hdf5: The HDF5 file containing a single dataset named tracings. This dataset is a (827, 4096, 12) tensor. The first dimension correspond to the 827 different exams from different patients; the second dimension correspond to the 4096 signal samples; the third dimension to the 12 different leads of the ECG exams in the following order: {DI, DII, DIII, AVR, AVL, AVF, V1, V2, V3, V4, V5, V6}.

The signals are sampled at 400 Hz. Some signals originally have a duration of 10 seconds (10 * 400 = 4000 samples) and others of 7 seconds (7 * 400 = 2800 samples). In order to make them all have the same size (4096 samples) we fill them with zeros on both sizes. For instance, for a 7 seconds ECG signal with 2800 samples we include 648 samples at the beginning and 648 samples at the end, yielding 4096 samples that are them saved in the hdf5 dataset. All signal are represented as floating point numbers at the scale 1e-4V: so it should be multiplied by 1000 in order to obtain the signals in V.

In python, one can read this file using the following sequence: python import h5py with h5py.File(args.tracings, "r") as f: x = np.array(f['tracings'])

• The file attributes.csv contain basic patient attributes: sex (M or F) and age. It contain 827 lines (plus the header). The i-th tracing in ecg_tracings.hdf5 correspond to the i-th line.
• annotations/: folder containing annotations csv format. Each csv file contain 827 lines (plus the header). The i-th line correspond to the i-th tracing in ecg_tracings.hdf5 correspond to the in all csv files. The csv files all have 6 columns 1dAVb, RBBB, LBBB, SB, AF, ST corresponding to weather the annotator have detect the abnormality in the ECG (=1) or not (=0).
  1. cardiologist[1,2].csv contain annotations from two different cardiologist.
  2. gold_standard.csv gold standard annotation for this test dataset. When the cardiologist 1 and cardiologist 2 agree, the common diagnosis was considered as gold standard. In cases where there was any disagreement, a third senior specialist, aware of the annotations from the other two, decided the diagnosis.
  3. dnn.csv prediction from the deep neural network described in the paper. THe threshold is set in such way it maximizes the F1 score.
  4. cardiology_residents.csv annotations from two 4th year cardiology residents (each annotated half of the dataset).
  5. emergency_residents.csv annotations from two 3rd year emergency residents (each annotated half of the dataset).
  6. medical_students.csv annotations from two 5th year medical students (each annotated half of the dataset).