Genome-wide SNP genotyping of African rainforest hunter-gatherers and neighbouring agriculturalists

Metabric breast cancer samples (Expression raw data)

Haplotype Reference Consortium Release 1.1 - subset for release via the EGA

ChIP-Seq data for 38 Acute Myeloid Leukemia sample(s). 244 run(s), 226 experiment(s), 226 analysis(s) on human genome GRCh38. Part of BLUEPRINT release August 2016. Analysis documentation available at http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/20160816/homo_sapiens/README_chipseq_analysis_ebi_20160816

HLA genotyping of 1958 British Birth Cohort samples

RNAseq files (dataset 2 of 2) for Mullighan PAX5_B-ALL paper titled "PAX5-driven Subtypes of B-cell Acute Lymphoblastic Leukemia"

Dataset contains plasma DNA whole genome sequencing on 4 breast cancer patients. It also includes matched germline and tumour whole genome sequencing data. Two benign cancer patients were also sequenced and their plasma DNA and matched germline whole genome sequencing data are included in the dataset. Samples were sequenced on Illumina HiSeqX Ten.

The Papua New Guinean Lowlanders dataset includes 41 whole genome sequences for Papua New Guinean individuals sampled in Daru. DNA was extracted from saliva samples (Oragen kit). Sequencing libraries were prepared using the TruSeq DNA PCR-Free HT kit. 150 bp paired-end sequencing was performed on the Illumina HiSeq X5 sequencer. The PGAP dataset provides Fastq, mapped cram files (GRCh38) and phenotype measurements.

The dataset of Integrative modeling of tumor genomes and epigenomes for enhanced cancer diagnosis by cell-free DNA includes 3784 whole genome sequencing bam files on the MGI and Illumina platform. The analyzed samples include plasma samples from normal individuals and patients with cancer.

HipSci - Healthy Normals - Genotyping Array - September 2016

Integrated callset of low coverage Ethiopian and Egyptian genomes from the Pagani et al. 2015 AJHG paper (doi: http://dx.doi.org/10.1016/j.ajhg.2015.04.019)

Genome and transcriptome sequence data from a patient, generated as part of the BC Cancer Agency's Pediatric Personalized Onco-Genomics study

RNAseq BAM files for the Fat samples of the EUROBATS project

38 STEMI patients at hospital admission, 24 hours (acute phase) and 6-8 weeks (chronic phase) after STEMI

Second round of follow-up of population-based LifeLines-DEEP cohort

Whole genome sequencing data of 84 Nama individuals with KhoeSan ancestry from southern Africa in phased VCF format. Variants were called/phased as part of the African Genome Resource. The data has been aligned to GRCh37.

HipSci - Primary Immune Deficiency - Exome Sequencing - July 2017

Relevant clinical data for OAK including treatment arm, histology, overall survival, progression-free survival, and best confirmed overall response.

EGAS00001001311: Genome-wide study of resistance to severe malaria in eleven worldwide populations:Mali

h5 files from 15 single cell PDAC samples described in "Transcription phenotypes of pancreatic cancer are driven by genomic events events during tumour evolution"