Findings from the Coronavirus (COVID-19) Infection Survey for England.

In early-February 2020, the first cases of COVID-19 in the United Kingdom (UK) were confirmed. The number of cases in the UK increased significantly at the end of 2021. On January 13, 2023, the number of confirmed cases in the UK amounted to 24,243,393. COVID deaths among highest in Europe There were 202,157 confirmed coronavirus deaths in the UK as of January 13, 2023. For further information about the coronavirus (COVID-19) pandemic, please visit our dedicated Facts and Figures page.

Current infection rate in Europe The current infection rate in the UK was 50 cases per 100,000 population in the last seven days as of January 16. San Marino had the highest seven day rate of infections in Europe at 336.

This feature service contains COVID-19 data automatically updated from the Public Health England (PHE) API service, daily. Using this API, this service takes the current day request minus two days. Therefore the data will always be two days behind. This is a result of the delay between PHE's specimen date and reporting date.The Polygon Layers, which all contain spatial data, provide information about the latest cumulative figures at three geographies; Local Authority, Regions and Nations. The Tables, which are not spatially aware, provide historical data for each feature. The format of these tables allow you to use the Join tool with the Polygon Layers and create a time enabled layer. This can be used within a dashboard or on the animation tool to view patterns over time.

As of July 30, 2020, there had been more confirmed cases of coronavirus (COVID-19) among women in England compared to men. The data shows that there are few confirmed cases among children, while there have been approximately nine thousand confirmed cases for both men and women aged 80 to 84 years.

As of July 30, there have been 302,301 confirmed coronavirus cases in the UK, and the regional breakdown of cases can be found here. For further information about the coronavirus (COVID-19) pandemic, please visit our dedicated Facts and Figures page.

Provisional counts of the number of deaths and age-standardised mortality rates involving the coronavirus (COVID-19), by occupational groups, for deaths registered between 9 March and 28 December 2020 in England and Wales. Figures are provided for males and females.

In early-February, 2020, the first cases of the coronavirus (COVID-19) were reported in the United Kingdom (UK). The number of cases in the UK has since risen to 24,243,393, with 1,062 new cases reported on January 13, 2023. The highest daily figure since the beginning of the pandemic was on January 6, 2022 at 275,646 cases.

COVID deaths in the UK COVID-19 has so far been responsible for 202,157 deaths in the UK as of January 13, 2023, and the UK has one of the highest death toll from COVID-19 in Europe. As of January 13, the incidence of deaths in the UK is 298 per 100,000 population.

Regional breakdown The South East has the highest amount of cases in the country with 3,123,050 confirmed cases as of January 11. London and the North West have 2,912,859 and 2,580,090 cases respectively.

For further information about the coronavirus (COVID-19) pandemic, please visit our dedicated Facts and Figures page.

In early-February 2020, the first cases of COVID-19 in the United Kingdom (UK) were confirmed. As of December 2023, the South East had the highest number of confirmed first episode cases of the virus in the UK with 3,180,101 registered cases, while London had 2,947,727 confirmed first-time cases. Overall, there has been 24,243,393 confirmed cases of COVID-19 in the UK as of January 13, 2023.

COVID deaths in the UK COVID-19 was responsible for 202,157 deaths in the UK as of January 13, 2023, and the UK had the highest death toll from coronavirus in western Europe. The incidence of deaths in the UK was 297.8 per 100,000 population as January 13, 2023.

Current infection rate in Europe The infection rate in the UK was 43.3 cases per 100,000 population in the last seven days as of March 13, 2023. Austria had the highest rate at 224 cases per 100,000 in the last week.

For further information about the coronavirus (COVID-19) pandemic, please visit our dedicated Facts and Figures page.

COVID-19Plots and analysis relating to the coronavirus pandemic. Includes five sets of plots and associated R code to generate them.1) HeatmapsUpdated every few days - heatmaps of COVID-19 case and death trajectories for Local Authorities (or equivalent) in England, Wales, Scotland, Ireland and Germany.2) All cause mortalityUpdated on Tuesday (for England & Wales), Wednesday (for Scotland) and Friday (for Northern Ireland) - analysis and plots of weekly all-cause deaths in 2020 compared to previous years by country, age, sex and region. Also a set of international comparisons using data from mortality.org3) ExposuresNo longer updated - mapping of potential COVID-19 mortality exposure at local levels (LSOAs) in England based on the age-sex structure of the population and levels of poor health.There is also a Shiny app which creates slightly lower resolution versions of the same plots online, which you can find here: https://victimofmaths.shinyapps.io/covidmapper/, on GitHub https://github.com/VictimOfMaths/COVIDmapper and uploaded to this record4) Index of Multiple Deprivation No longer updated - preliminary analysis of the inequality impacts of COVID-19 based on Local Authority level cases and levels of deprivation. 5) Socioeconomic inequalities. No longer updated (unless ONS release more data) - Analysis of published ONS figures of COVID-19 and other cause mortality in 2020 compared to previous years by deprivation decile.Latest versions of plots and associated analysis can be found on Twitter: https://twitter.com/victimofmathsThis work is described in more detail on the UK Data Service Impact and Innovation Lab blog: https://blog.ukdataservice.ac.uk/visualising-high-risk-areas-for-covid-19-mortality/Adapted from data from the Office for National Statistics licensed under the Open Government Licence v.1.0.http://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/

11th January 2020 Change to vaccination data made available by UK gov - now just cumulative number of vaccines delivered are available for both first and second doses. For the devolved nations the cumulative totals are available for the dates from when given, however for the UK as a whole the total doses given is just on the last date of the index, regardless of when those vaccines were given.

4th January 2020 VACCINATION DATA ADDED - New and Cumulative First Dose Vaccination Data added to UK_National_Total_COVID_Dataset.csv and UK_Devolved_Nations_COVID_Dataset.csv

2nd December 2020:

NEW population, land area and population density data added in file NEW_Official_Population_Data_ONS_mid-2019.csv. This data is scraped from the Office for National Statistics and covers the UK, devolved UK nations, regions and local authorities (boroughs).

20th November 2020:

With European governments struggling with a 'second-wave' of rising cases, hospitalisations and deaths resulting from the SARS-CoV-2 virus (COVID-19), I wanted to make a comparative analysis between the data coming out of major European nations since the start of the pandemic.

I started by creating a Sweden COVID-19 dataset and now I'm looking at my own country, the United Kingdom.

The data comes from https://coronavirus.data.gov.uk/ and I used the Developer's Guide to scrape the data, so it was a fairly simple process. The notebook that scapes the data is public and can be found here. Further information about data collection methodologies and definitions can be found here.

The data includes the overall numbers for the UK as a whole, the numbers for each of the devolved UK nations (Eng, Sco, Wal & NI), English Regions and Upper Tier Local Authorities (UTLA) for all of the UK (what we call Boroughs). I have also included a small table with the populations of the 4 devolved UK nations, used to calculate the death rates per 100,000 population.

As I've said for before - I am not an Epidemiologist, Sociologist or even a Data Scientist. I am actually a Mechanical Engineer! The objective here is to improve my data science skills and maybe provide some useful data to the wider community.

Any questions, comments or suggestions are most welcome! I am open to requests and collaborations! Stay Safe!

Initiative to mobilize talent and partnerships across United Kingdom to coordinate and connect national data science driven research efforts related to COVID-19 to address wider impact of COVID-19 pandemic.National Institute for Health Data Science for England, Wales, Scotland and Northern Ireland, is championing use of health data to respond to COVID-19.

As of January 12, 2023, COVID-19 has been responsible for 202,157 deaths in the UK overall. The North West of England has been the most affected area in terms of deaths at 28,116, followed by the South East of England with 26,221 coronavirus deaths. Furthermore, there have been 22,264 mortalities in London as a result of COVID-19.

For further information about the coronavirus (COVID-19) pandemic, please visit our dedicated Facts and Figures page.

On March 4, 2020, the first death as a result of coronavirus (COVID-19) was recorded in the United Kingdom (UK). The number of deaths in the UK has increased significantly since then. As of January 13, 2023, the number of confirmed deaths due to coronavirus in the UK amounted to 202,157. On January 21, 2021, 1,370 deaths were recorded, which was the highest total in single day in the UK since the outbreak began.

Number of deaths among highest in Europe
The UK has had the highest number of deaths from coronavirus in western Europe. In terms of rate of coronavirus deaths, the UK has recorded 297.8 deaths per 100,000 population.

Cases in the UK The number of confirmed cases of coronavirus in the UK was 24,243,393 as of January 13, 2023. The South East has the highest number of first-episode confirmed cases of the virus in the UK with 3,123,050 cases, while London and the North West have 2,912,859 and 2,580,090 confirmed cases respectively. As of January 16, the UK has had 50 new cases per 100,000 in the last seven days.

For further information about the coronavirus (COVID-19) pandemic, please visit our dedicated Facts and Figures page.

The COVID-19 Health Inequalities Monitoring in England (CHIME) tool brings together data relating to the direct impacts of coronavirus (COVID-19) on factors such as mortality rates, hospital admissions, confirmed cases and vaccinations.

By presenting inequality breakdowns - including by age, sex, ethnic group, level of deprivation and region - the tool provides a single point of access to:

• show how inequalities have changed during the course of the pandemic and what the current cumulative picture is
• bring together data in one tool to enable users to access and use the intelligence more easily
• provide indicators with a consistent methodology across different data sets to facilitate understanding
• support users to identify and address inequalities within their areas, and identify priority areas for recovery

In the March 2023 update, data has been updated for deaths, hospital admissions and vaccinations. Data on inequalities in vaccination uptake within upper tier local authorities has been added to the tool for the first time. This replaces data for lower tier local authorities, published in December 2022, allowing the reporting of a wider range of inequality breakdowns within these areas.

Please send any questions or comments to PHA-OHID@dhsc.gov.uk

The UK COVID-19 Vocal Audio Dataset is designed for the training and evaluation of machine learning models that classify SARS-CoV-2 infection status or associated respiratory symptoms using vocal audio. The UK Health Security Agency recruited voluntary participants through the national Test and Trace programme and the REACT-1 survey in England from March 2021 to March 2022, during dominant transmission of the Alpha and Delta SARS-CoV-2 variants and some Omicron variant sublineages. Audio recordings of volitional coughs, exhalations, and speech (speech not available in open access version) were collected in the 'Speak up to help beat coronavirus' digital survey alongside demographic, self-reported symptom and respiratory condition data, and linked to SARS-CoV-2 test results. The UK COVID-19 Vocal Audio Dataset represents the largest collection of SARS-CoV-2 PCR-referenced audio recordings to date. PCR results were linked to 70,794 of 72,999 participants and 24,155 of 25,776 positive cases. Respiratory symptoms were reported by 45.62% of participants. This dataset has additional potential uses for bioacoustics research, with 11.30% participants reporting asthma, and 27.20% with linked influenza PCR test results.

Contents

• participant_metadata.csv row-wise, participant identifier indexed information on participant demographics and health status. Please see A large-scale and PCR-referenced vocal audio dataset for COVID-19 for a full description of the dataset.
• audio_metadata.csv row-wise, participant identifier indexed information on three recorded audio modalities, including audio filepaths. Please see A large-scale and PCR-referenced vocal audio dataset for COVID-19 for a full description of the dataset.
• train_test_splits.csv row-wise, participant identifier indexed information on train test splits for the following sets: 'Randomised' train and test set, Standard' train and test set, Matched' train and test sets, 'Longitudinal' test set and 'Matched Longitudinal' test set. Please see Audio-based AI classifiers show no evidence of improved COVID-19 screening over simple symptoms checkers for a full description of the train test splits.
• audio/ directory containing all the recordings in .wav format
  • Due to the large size of the dataset, to assist with ease of download, the audio files have been zipped into covid_data.z{ip, 01-24}. This enables the dataset to be downloaded in short periods, reducing the chances of a dropped internet connection scuppering progress. To unzip, first, ensure that all zip files are in the same directory. Then run the command 'unzip covid_data.zip' or right-click on 'covid_data.zip' and use a programme such as 'The Unarchiver' to open the file.
  • Once extracted, to check the validity of the download, please run the 'python Turing-RSS-Health-Data-Lab-Biomedical-Acoustic-Markers/data-paper/unit-tests.py. All tests should pass with no exceptions. Please clone the GitHub repo detailed below.
• README.md full dataset descriptor.
• DataDictionary_UKCOVID19VocalAudioDataset_OpenAccess.xlsx descriptor of each dataset attribute with the percentage coverage.

Code Base

The accompanying code can be found here: https://github.com/alan-turing-institute/Turing-RSS-Health-Data-Lab-Biomedical-Acoustic-Markers

Citations:

Please cite.

@article{coppock2022,

author = {Coppock, Harry and Nicholson, George and Kiskin, Ivan and Koutra, Vasiliki and Baker, Kieran and Budd, Jobie and Payne, Richard and Karoune, Emma and Hurley, David and Titcomb, Alexander and Egglestone, Sabrina and Cañadas, Ana Tendero and Butler, Lorraine and Jersakova, Radka and Mellor, Jonathon and Patel, Selina and Thornley, Tracey and Diggle, Peter and Richardson, Sylvia and Packham, Josef and Schuller, Björn W. and Pigoli, Davide and Gilmour, Steven and Roberts, Stephen and Holmes, Chris},

title = {Audio-based AI classifiers show no evidence of improved COVID-19 screening over simple symptoms checkers},

journal = {arXiv},

year = {2022},

doi = {10.48550/ARXIV.2212.08570},

url = {https://arxiv.org/abs/2212.08570},

}

@article{budd2022,

author={Jobie Budd and Kieran Baker and Emma Karoune and Harry Coppock and Selina Patel and Ana Tendero Cañadas and Alexander Titcomb and Richard Payne and David Hurley and Sabrina Egglestone and Lorraine Butler and George Nicholson and Ivan Kiskin and Vasiliki Koutra and Radka Jersakova and Peter Diggle and Sylvia Richardson and Bjoern Schuller and Steven Gilmour and Davide Pigoli and Stephen Roberts and Josef Packham Tracey Thornley Chris Holmes},

title={A large-scale and PCR-referenced vocal audio dataset for COVID-19},

year={2022},

journal={arXiv},

doi = {10.48550/ARXIV.2212.07738}

}

@article{Pigoli2022,

author={Davide Pigoli and Kieran Baker and Jobie Budd and Lorraine Butler and Harry Coppock and Sabrina Egglestone and Steven G.\ Gilmour and Chris Holmes and David Hurley and Radka Jersakova and Ivan Kiskin and Vasiliki Koutra and George Nicholson and Joe Packham and Selina Patel and Richard Payne and Stephen J.\ Roberts and Bj\"{o}rn W.\ Schuller and Ana Tendero-Ca$\tilde{n}$adas and Tracey Thornley and Alexander Titcomb},

title={Statistical Design and Analysis for Robust Machine Learning: A Case Study from Covid-19},

year={2022},

journal={arXiv},

doi = {10.48550/ARXIV.2212.08571}

}

The Dublin Core™ Metadata Initiative

- Title: The UK COVID-19 Vocal Audio Dataset, Open Access Edition.

- Creator: The UK Health Security Agency (UKHSA) in collaboration with The Turing-RSS Health Data Lab.

- Subject: COVID-19, Respiratory symptom, Other audio, Cough, Asthma, Influenza.

- Description: The UK COVID-19 Vocal Audio Dataset Open Access Edition is designed for the training and evaluation of machine learning models that classify SARS-CoV-2 infection status or associated respiratory symptoms using vocal audio. The UK Health Security Agency recruited voluntary participants through the national Test and Trace programme and the REACT-1 survey in England from March 2021 to March 2022, during dominant transmission of the Alpha and Delta SARS-CoV-2 variants and some Omicron variant sublineages. Audio recordings of volitional coughs and exhalations were collected in the 'Speak up to help beat coronavirus' digital survey alongside demographic, self-reported symptom and respiratory condition data, and linked to SARS-CoV-2 test results. The UK COVID-19 Vocal Audio Dataset Open Access Edition represents the largest collection of SARS-CoV-2 PCR-referenced audio recordings to date. PCR results were linked to 70,794 of 72,999 participants and 24,155 of 25,776 positive cases. Respiratory symptoms were reported by 45.62% of participants. This dataset has additional potential uses for bioacoustics research, with 11.30% participants reporting asthma, and 27.20% with linked influenza PCR test results.

- Publisher: The UK Health Security Agency (UKHSA).

- Contributor: The UK Health Security Agency (UKHSA) and The Alan Turing Institute.

- Date: 2021-03/2022-03

- Type: Dataset

- Format: Waveform Audio File Format audio/wave, Comma-separated values text/csv

- Identifier: 10.5281/zenodo.10043978

- Source: The UK COVID-19 Vocal Audio Dataset Protected Edition, accessed via application to Accessing UKHSA protected data.

- Language: eng

- Relation: The UK COVID-19 Vocal Audio Dataset Protected Edition, accessed via application to Accessing UKHSA protected data.

- Coverage: United Kingdom, 2021-03/2022-03.

- Rights: Open Government Licence version 3 (OGL v.3), © Crown Copyright UKHSA 2023.

- accessRights: When you use this information under the Open Government Licence, you should include the following attribution: The UK COVID-19 Vocal Audio Dataset Open Access Edition, UK Health Security Agency, 2023, licensed under the Open Government Licence v3.0 and cite the papers detailed above.

This dataset contains information on the number of COVID-19 vaccinations provided by the NHS in England, both in total since vaccinations began and to the current eligible population.

Dataset description

Daily official UK Covid data. The data is available per country (England, Scotland, Wales and Northern Ireland) and for different regions in England. The different regions are split into two different files as part of the data is directly gathered by the NHS (National Health Service). The files that contain the word 'nhsregion' in their name, include data related to hospitals only, such as number of admissions or number of people in respirators. The files containing the word 'region' in their name, include the rest of the data, such as number of cases, number of vaccinated people or number of tests performed per day. The next paragraphs describe the columns for the different file types.

Region files

Files related to regions (word 'region' included in the file name) have the following columns: - "date": date in YYYY-MM-DD format - "area type": type of area covered in the file (region or nation) - "area name": name of area covered in the file (region or nation name) - "daily cases": new cases on a given date - "cum cases": cumulative cases - "new deaths 28days": new deaths within 28 days of a positive test - "cum deaths 28days": cumulative deaths within 28 days of a positive test - "new deaths_60days": new deaths within 60 days of a positive test - "cum deaths 60days": cumulative deaths within 60 days of a positive test - "new_first_episode": new first episodes by date - "cum_first_episode": cumulative first episodes by date - "new_reinfections": new reinfections by specimen data - "cum_reinfections": cumualtive reinfections by specimen data - "new_virus_test": new virus tests by date - "cum_virus_test": cumulative virus tests by date - "new_pcr_test": new PCR tests by date - "cum_pcr_test": cumulative PCR tests by date - "new_lfd_test": new LFD tests by date - "cum_lfd_test": cumulative LFD tests by date - "test_roll_pos_pct": percentage of unique case positivity by date rolling sum - "test_roll_people": unique people tested by date rolling sum - "new first dose": new people vaccinated with a first dose - "cum first dose": cumulative people vaccinated with a first dose - "new second dose": new people vaccinated with a first dose - "cum second dose": cumulative people vaccinated with a first dose - "new third dose": new people vaccinated with a booster or third dose - "cum third dose": cumulative people vaccinated with a booster or third dose

Country files

Files related to countries (England, Northern Ireland, Scotland and Wales) have the above columns and also: - "new admissions": new admissions, - "cum admissions": cumulative admissions, - "hospital cases": patients in hospitals, - "ventilator beds": COVID occupied mechanical ventilator beds - "trans_rate_min": minimum transmission rate (R) - "trans_rate_max": maximum transmission rate (R) - "trans_growth_min": transmission rate growth min - "trans_growth_max": transmission rate growth max

NHS Region files

Files related to nhsregion (word 'nhsregion' included in the file name) have the following columns: - "new admissions": new admissions, - "cum admissions": cumulative admissions, - "hospital cases": patients in hospitals, - "ventilator beds": COVID occupied mechanical ventilator beds - "trans_rate_min": minimum transmission rate (R) - "trans_rate_max": maximum transmission rate (R) - "trans_growth_min": transmission rate growth min - "trans_growth_max": transmission rate growth max

It's worth noting that the dataset hasn't been cleaned and it needs cleaning. Also, different files have different null columns. This isn't an error in the dataset but the way different countries and regions report the data.

Links to a range of useful COVID-19 datasets and visualisations. For information and advice in relation to COVID-19 please use the following information from reliable, trusted sources such as the Government, the NHS, Public Health England and the Council. www.gov.uk/coronavirus www.nhs.uk/coronavirus www.calderdale.gov.uk/coronavirus