2 datasets found
  1. Soil and Landscape Grid National Soil Attribute Maps - Rock outcrop...

    • researchdata.edu.au
    datadownload
    Updated Dec 4, 2023
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    Ross Searle; Brendan Malone; Searle, Ross; Malone, Brendan (2023). Soil and Landscape Grid National Soil Attribute Maps - Rock outcrop occurrence (3" resolution) - Release 1 [Dataset]. http://doi.org/10.25919/82GQ-PF38
    Explore at:
    datadownloadAvailable download formats
    Dataset updated
    Dec 4, 2023
    Dataset provided by
    CSIROhttp://www.csiro.au/
    Authors
    Ross Searle; Brendan Malone; Searle, Ross; Malone, Brendan
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Jan 1, 1950 - Jan 1, 2020
    Area covered
    Description

    The map gives a modelled estimate (probability) of the spatial distribution of rock outcroppings across Australia.

    This product was produced in the development of the updated soil thickness map of Australia details of which are published in Malone and Searle (2020; https://doi.org/10.1016/j.geoderma.2020.114579). This product is the output from Model 1 of aforementioned paper and uses the Rock Properties database provided by Geoscience Australia which gives the locations of sampled rock outcrops across Australia (http://www.ga.gov.au/scientific-topics/disciplines/geophysics/rock-properties). Filtering this dataset resulted in 14616 rock outcrop locations within areas where relief >300 m. A machine learning model was used to find relationships between observed data and associated environmental covariate data to inform the mapping of rock outcrop occurrence across Australia.

    Detailed information about the Soil and Landscape Grid of Australia can be found at - https://esoil.io/TERNLandscapes/Public/Pages/SLGA/index.html

    Attribute Definition: Probability of rock outcrops Units: 0-1 Period (temporal coverage; approximately): 1950-2021; Spatial resolution: 3 arc seconds (approx 90m); Total number of gridded maps for this attribute: 1; Number of pixels with coverage per layer: 2007M (49200 * 40800); Data license : Creative Commons Attribution 4.0 (CC BY); Target data standard: GlobalSoilMap specifications;NA Format: Cloud Optimised GeoTIFF; Lineage: The modelling and mapping of rock outcrop occurrence was performed as part of efforts to update and improve modelling of soil thickness across the Australia. Following is the description of method and further details of this work.

    Rather than fitting a single model of soil thicknesses we went for a nuanced approach which entailed three separate models for:

    Model 1. Predicting the occurrence of rock outcrops.

    Model 2. Predicting the thickness of soils within the 0-2m range

    Model 3. Predicting the occurrence of deep soils (soils greater than 2m thick)

    Models 1 and 3 used the categorical model variant of the Ranger RF which was preceded by distinguishing; for Model 1, the observations that were deemed as rock outcrops from soils. And for Model 3, distinguishing soils that were less than 2m thick (and not rock outcrops) from soils greater than 2m thick. Ultimately both Models 1 and 3 were binary categorical models. 50 repeats of 5-fold CV (cross-validation) iterations of the Ranger RF model were run for each Model variant.

    Model 2 used the regression form of the random forest model. After removing from the total data set the observations that were regarded as rock outcrops and soil greater than 2m, there were 111,302 observations available. Of these, 67,698 had explicitly defined soil thickness values. The remaining 43,604 were right-censored data and were treated as follows. For each repeated 5-fold iteration, prior to splitting the data in calibration and validation datasets, values from a beta function were drawn at random of length 43,604. This value (between 0 and 1) was multiplied by the censored value soil thickness and then added to this same value, creating a simulated pseudo-soil thickness. Once the simulated data were combined with actual soil thickness data, the values were square-root transformed to approximate a normal distribution. Ranger RF modelling proceeded after optimising the Hyperparameter settings as described above for the categorical modelling. Like the categorical modelling, 50 repeated 5-fold CV iterations were computed.

    All three model approaches were integrated via a simple ‘if-then’ pixel-based procedure. At each pixel, if Model 1 indicated the presence of rock outcrops 45 times or more out of 50 (90% of resampling iterations), the estimated soil thickness was estimated as rock outcrop, or effectively 0cm. Similarly, for Model 3 which was the model based on prediction of deep soils (soils >2m deep). In no situations did we encounter both Models 1 and 3 predict in the positive on 90% or more occasions simultaneously. If Model 1 or 3 did not predict in the positive in 90% of iterations, the prediction outputs of Model 2 were used.

    After model integration, we derived a set of soil thickness exceedance probability mapping outputs. These were derived simply by assessing the empirical probabilities (at each pixel) and then tallying the number of occasions the estimated soil depth exceeded given threshold depths of 10cm, 50cm, 100cm, and 150cm. This tallied number was divided by 50 to give an exceedance probability for each threshold depth.

    All processing for the generation of these products was undertaken using the R programming language. R Core Team (2020). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.

    Code - https://github.com/AusSoilsDSM/SLGA Observation data - https://esoil.io/TERNLandscapes/Public/Pages/SoilDataFederator/SoilDataFederator.html Covariate rasters - https://esoil.io/TERNLandscapes/Public/Pages/COGs

  2. n

    NCCOS Assessment: Modeling At-Sea Density of Marine Birds to Support...

    • cmr.earthdata.nasa.gov
    • catalog.data.gov
    not provided
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    NCCOS Assessment: Modeling At-Sea Density of Marine Birds to Support Atlantic Marine Renewable Energy Planning from 1978-2016 (NCEI Accession 0176682) [Dataset]. http://doi.org/10.25921/8eq5-q834
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    not provided(1516.42 KB)Available download formats
    Time period covered
    Jan 1, 1978 - Oct 5, 2016
    Area covered
    Description

    This dataset provides seasonal spatial rasters of median predicted long-term (1978-2016) relative density of 47 marine bird species throughout the US Atlantic Outer Continental Shelf (OCS) and adjacent waters at a 2-km spatial resolution. Three indications of the uncertainty associated with the model predictions are also provided: 1) seasonal spatial layers indicating areas with no survey effort, 2) seasonal spatial rasters of the precision of predicted relative density of each species characterized as its coefficient of variation (CV), and 3) seasonal spatial rasters of the precision of predicted relative density of each species characterized as its 90% confidence interval. Predicted relative density should always be considered in conjunction with these three indications of uncertainty. Suggested symbology class breaks and labels for mapping predicted relative density and its CV are also included. Finally, this dataset also includes spatial rasters of environmental predictor variables that were used in the predictive modeling.

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Click to copy link
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Close
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Ross Searle; Brendan Malone; Searle, Ross; Malone, Brendan (2023). Soil and Landscape Grid National Soil Attribute Maps - Rock outcrop occurrence (3" resolution) - Release 1 [Dataset]. http://doi.org/10.25919/82GQ-PF38
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Soil and Landscape Grid National Soil Attribute Maps - Rock outcrop occurrence (3" resolution) - Release 1

Explore at:
datadownloadAvailable download formats
Dataset updated
Dec 4, 2023
Dataset provided by
CSIROhttp://www.csiro.au/
Authors
Ross Searle; Brendan Malone; Searle, Ross; Malone, Brendan
License

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Time period covered
Jan 1, 1950 - Jan 1, 2020
Area covered
Description

The map gives a modelled estimate (probability) of the spatial distribution of rock outcroppings across Australia.

This product was produced in the development of the updated soil thickness map of Australia details of which are published in Malone and Searle (2020; https://doi.org/10.1016/j.geoderma.2020.114579). This product is the output from Model 1 of aforementioned paper and uses the Rock Properties database provided by Geoscience Australia which gives the locations of sampled rock outcrops across Australia (http://www.ga.gov.au/scientific-topics/disciplines/geophysics/rock-properties). Filtering this dataset resulted in 14616 rock outcrop locations within areas where relief >300 m. A machine learning model was used to find relationships between observed data and associated environmental covariate data to inform the mapping of rock outcrop occurrence across Australia.

Detailed information about the Soil and Landscape Grid of Australia can be found at - https://esoil.io/TERNLandscapes/Public/Pages/SLGA/index.html

Attribute Definition: Probability of rock outcrops Units: 0-1 Period (temporal coverage; approximately): 1950-2021; Spatial resolution: 3 arc seconds (approx 90m); Total number of gridded maps for this attribute: 1; Number of pixels with coverage per layer: 2007M (49200 * 40800); Data license : Creative Commons Attribution 4.0 (CC BY); Target data standard: GlobalSoilMap specifications;NA Format: Cloud Optimised GeoTIFF; Lineage: The modelling and mapping of rock outcrop occurrence was performed as part of efforts to update and improve modelling of soil thickness across the Australia. Following is the description of method and further details of this work.

Rather than fitting a single model of soil thicknesses we went for a nuanced approach which entailed three separate models for:

Model 1. Predicting the occurrence of rock outcrops.

Model 2. Predicting the thickness of soils within the 0-2m range

Model 3. Predicting the occurrence of deep soils (soils greater than 2m thick)

Models 1 and 3 used the categorical model variant of the Ranger RF which was preceded by distinguishing; for Model 1, the observations that were deemed as rock outcrops from soils. And for Model 3, distinguishing soils that were less than 2m thick (and not rock outcrops) from soils greater than 2m thick. Ultimately both Models 1 and 3 were binary categorical models. 50 repeats of 5-fold CV (cross-validation) iterations of the Ranger RF model were run for each Model variant.

Model 2 used the regression form of the random forest model. After removing from the total data set the observations that were regarded as rock outcrops and soil greater than 2m, there were 111,302 observations available. Of these, 67,698 had explicitly defined soil thickness values. The remaining 43,604 were right-censored data and were treated as follows. For each repeated 5-fold iteration, prior to splitting the data in calibration and validation datasets, values from a beta function were drawn at random of length 43,604. This value (between 0 and 1) was multiplied by the censored value soil thickness and then added to this same value, creating a simulated pseudo-soil thickness. Once the simulated data were combined with actual soil thickness data, the values were square-root transformed to approximate a normal distribution. Ranger RF modelling proceeded after optimising the Hyperparameter settings as described above for the categorical modelling. Like the categorical modelling, 50 repeated 5-fold CV iterations were computed.

All three model approaches were integrated via a simple ‘if-then’ pixel-based procedure. At each pixel, if Model 1 indicated the presence of rock outcrops 45 times or more out of 50 (90% of resampling iterations), the estimated soil thickness was estimated as rock outcrop, or effectively 0cm. Similarly, for Model 3 which was the model based on prediction of deep soils (soils >2m deep). In no situations did we encounter both Models 1 and 3 predict in the positive on 90% or more occasions simultaneously. If Model 1 or 3 did not predict in the positive in 90% of iterations, the prediction outputs of Model 2 were used.

After model integration, we derived a set of soil thickness exceedance probability mapping outputs. These were derived simply by assessing the empirical probabilities (at each pixel) and then tallying the number of occasions the estimated soil depth exceeded given threshold depths of 10cm, 50cm, 100cm, and 150cm. This tallied number was divided by 50 to give an exceedance probability for each threshold depth.

All processing for the generation of these products was undertaken using the R programming language. R Core Team (2020). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.

Code - https://github.com/AusSoilsDSM/SLGA Observation data - https://esoil.io/TERNLandscapes/Public/Pages/SoilDataFederator/SoilDataFederator.html Covariate rasters - https://esoil.io/TERNLandscapes/Public/Pages/COGs

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