2 datasets found
  1. f

    The prostacyclin receptor PTGIR is a NRF2-dependent regulator of CD8 T cell...

    • springernature.figshare.com
    xlsx
    Updated Jun 28, 2025
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    Michael S. Dahabieh; Lisa M. DeCamp; Brandon M. Oswald; Zhen Fu; Susan M. Kitchen-Goosen; Matthew Vos; Shelby E. Compton; Joseph Longo; Nicole Foy; Kelsey S. Williams; Abigail E. Ellis; Amy Johnson; Ibukunoluwa Sodiya; Michael Vincent; Hyoungjoo Lee; Ryan D. Sheldon; Connie M. Krawczyk; Chen Yao; Tuoqi Wu; Russell G. Jones (2025). The prostacyclin receptor PTGIR is a NRF2-dependent regulator of CD8 T cell exhaustion [Dataset]. http://doi.org/10.6084/m9.figshare.26102845.v1
    Explore at:
    xlsxAvailable download formats
    Dataset updated
    Jun 28, 2025
    Dataset provided by
    figshare
    Authors
    Michael S. Dahabieh; Lisa M. DeCamp; Brandon M. Oswald; Zhen Fu; Susan M. Kitchen-Goosen; Matthew Vos; Shelby E. Compton; Joseph Longo; Nicole Foy; Kelsey S. Williams; Abigail E. Ellis; Amy Johnson; Ibukunoluwa Sodiya; Michael Vincent; Hyoungjoo Lee; Ryan D. Sheldon; Connie M. Krawczyk; Chen Yao; Tuoqi Wu; Russell G. Jones
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Table S1: Gene Set Enrichment Analysis (GSEA) of the oncogenic signature gene sets (MSigDB C6 gene set) enriched in Tex versus Teff cell clusters. RNA-seq data are mined from GSE89307, GSE84820, and GSE86881. Refer to first tab of excel sheet for detailed description of column headings in subsequent data tab.

    Table S2: qPCR, shRNA and sgRNA oligonucleotide sequences. 5’ to 3’ oligonucleotide sequences used for qPCR, CRISPR-Cas9 mediated knockout, and shRNA-mediated knockdown. Q denotes primers used for qPCR, and F and R denote forward and reverse primers, respectively.

    Table S3: Differential gene expression analysis from RNA-seq of adoptively transferred Keap1-/- versus WT P14 cells, isolated 7 days post LCMV Armstrong infection. Refer to first tab of excel sheet for detailed description of column headings in subsequent data tab.

    Table S4: C2, C5, C6, C7, NFE2L2.v2 and H Gene set enrichment analysis (GSEA) from RNA-seq of Keap1-/- versus WT P14+ CD8+ T cells upon LCMV Armstrong infection. A Positive or negative normalized enrichment score (NES) indicates a gene set enrichment in Keap1-/- cells or WT cells, respectively. Refer to first tab of excel sheet for detailed description of column headings in subsequent data tabs.

    Table S5: Differential gene expression analysis from RNA-seq of in vitro cultured CD8+ T cells with variable expression of PTGIR, treated with vehicle or iloprost. Refer to first tab of excel sheet for detailed description of column headings in subsequent data tabs.

    Table S6: Pathway analysis from RNA-seq of in vitro cultured CD8+ T cells with variable expression of PTGIR, treated with vehicle or iloprost. Refer to first tab of excel sheet for detailed description of column headings in subsequent data tabs.

    Liver annotated blots: Original western blot (labelled) for liver cell western blots show in Figure 1D

    HO1_LAMINB1_Tcells- Original western blot (labelled) for HO-1 and LAMIN B1 T cell western blots show in Figure 1D.

    KEAP1_Tcells- Original western blot (labelled) for KEAP1 T cell western blots show in Figure 1D.

    NQO1_Tcells- Original western blot (labelled) for KEAP1 T cell western blots show in Figure 1D.

  2. Excel file containing compiled primary experimental data subjected to...

    • plos.figshare.com
    xlsx
    Updated Sep 13, 2024
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    Jordan Jennings; Harrison Bracey; Jun Hong; Danny T. Nguyen; Rishav Dasgupta; Alondra Vázquez Rivera; Nicolas Sluis-Cremer; Jiong Shi; Christopher Aiken (2024). Excel file containing compiled primary experimental data subjected to statistical analyses. [Dataset]. http://doi.org/10.1371/journal.ppat.1011810.s002
    Explore at:
    xlsxAvailable download formats
    Dataset updated
    Sep 13, 2024
    Dataset provided by
    PLOShttp://plos.org/
    Authors
    Jordan Jennings; Harrison Bracey; Jun Hong; Danny T. Nguyen; Rishav Dasgupta; Alondra Vázquez Rivera; Nicolas Sluis-Cremer; Jiong Shi; Christopher Aiken
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Excel file containing compiled primary experimental data subjected to statistical analyses.

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Share
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Click to copy link
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Michael S. Dahabieh; Lisa M. DeCamp; Brandon M. Oswald; Zhen Fu; Susan M. Kitchen-Goosen; Matthew Vos; Shelby E. Compton; Joseph Longo; Nicole Foy; Kelsey S. Williams; Abigail E. Ellis; Amy Johnson; Ibukunoluwa Sodiya; Michael Vincent; Hyoungjoo Lee; Ryan D. Sheldon; Connie M. Krawczyk; Chen Yao; Tuoqi Wu; Russell G. Jones (2025). The prostacyclin receptor PTGIR is a NRF2-dependent regulator of CD8 T cell exhaustion [Dataset]. http://doi.org/10.6084/m9.figshare.26102845.v1

The prostacyclin receptor PTGIR is a NRF2-dependent regulator of CD8 T cell exhaustion

Related Article
Explore at:
60 scholarly articles cite this dataset (View in Google Scholar)
xlsxAvailable download formats
Dataset updated
Jun 28, 2025
Dataset provided by
figshare
Authors
Michael S. Dahabieh; Lisa M. DeCamp; Brandon M. Oswald; Zhen Fu; Susan M. Kitchen-Goosen; Matthew Vos; Shelby E. Compton; Joseph Longo; Nicole Foy; Kelsey S. Williams; Abigail E. Ellis; Amy Johnson; Ibukunoluwa Sodiya; Michael Vincent; Hyoungjoo Lee; Ryan D. Sheldon; Connie M. Krawczyk; Chen Yao; Tuoqi Wu; Russell G. Jones
License

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Description

Table S1: Gene Set Enrichment Analysis (GSEA) of the oncogenic signature gene sets (MSigDB C6 gene set) enriched in Tex versus Teff cell clusters. RNA-seq data are mined from GSE89307, GSE84820, and GSE86881. Refer to first tab of excel sheet for detailed description of column headings in subsequent data tab.

Table S2: qPCR, shRNA and sgRNA oligonucleotide sequences. 5’ to 3’ oligonucleotide sequences used for qPCR, CRISPR-Cas9 mediated knockout, and shRNA-mediated knockdown. Q denotes primers used for qPCR, and F and R denote forward and reverse primers, respectively.

Table S3: Differential gene expression analysis from RNA-seq of adoptively transferred Keap1-/- versus WT P14 cells, isolated 7 days post LCMV Armstrong infection. Refer to first tab of excel sheet for detailed description of column headings in subsequent data tab.

Table S4: C2, C5, C6, C7, NFE2L2.v2 and H Gene set enrichment analysis (GSEA) from RNA-seq of Keap1-/- versus WT P14+ CD8+ T cells upon LCMV Armstrong infection. A Positive or negative normalized enrichment score (NES) indicates a gene set enrichment in Keap1-/- cells or WT cells, respectively. Refer to first tab of excel sheet for detailed description of column headings in subsequent data tabs.

Table S5: Differential gene expression analysis from RNA-seq of in vitro cultured CD8+ T cells with variable expression of PTGIR, treated with vehicle or iloprost. Refer to first tab of excel sheet for detailed description of column headings in subsequent data tabs.

Table S6: Pathway analysis from RNA-seq of in vitro cultured CD8+ T cells with variable expression of PTGIR, treated with vehicle or iloprost. Refer to first tab of excel sheet for detailed description of column headings in subsequent data tabs.

Liver annotated blots: Original western blot (labelled) for liver cell western blots show in Figure 1D

HO1_LAMINB1_Tcells- Original western blot (labelled) for HO-1 and LAMIN B1 T cell western blots show in Figure 1D.

KEAP1_Tcells- Original western blot (labelled) for KEAP1 T cell western blots show in Figure 1D.

NQO1_Tcells- Original western blot (labelled) for KEAP1 T cell western blots show in Figure 1D.

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