A Baseflow Filter for Hydrologic Models in R Resources in this dataset:Resource Title: A Baseflow Filter for Hydrologic Models in R. File Name: Web Page, url: https://www.ars.usda.gov/research/software/download/?softwareid=383&modecode=20-72-05-00 download page

Dataset Card for Annotated LibriTTS-R

This dataset is an annotated version of a filtered LibriTTS-R [1]. LibriTTS-R [1] is a sound quality improved version of the LibriTTS corpus which is a multi-speaker English corpus of approximately 960 hours of read English speech at 24kHz sampling rate, published in 2019. In the text_description column, it provides natural language annotations on the characteristics of speakers and utterances, that have been generated using the Data-Speech… See the full description on the dataset page: https://huggingface.co/datasets/parler-tts/libritts-r-filtered-speaker-descriptions.

This dataset contains information about all the features extracted from the raw data files, the formulas that were assigned to some of these features, and the candidate compounds that correspond to those formulas. Data sources, bioactivity, exposure estimates, functional uses, and predicted and observed retention times are available for all candidate compounds. This dataset is associated with the following publication: Newton, S., R. McMahen, J. Sobus, K. Mansouri, A. Williams, A. McEachran, and M. Strynar. Suspect Screening and Non-Targeted Analysis of Drinking Water Using Point-Of-Use Filters. ENVIRONMENTAL POLLUTION. Elsevier Science Ltd, New York, NY, USA, 234: 297-306, (2018).

The data presented here were used to produce the following paper:

Archibald, Twine, Mthabini, Stevens (2021) Browsing is a strong filter for savanna tree seedlings in their first growing season. J. Ecology.

The project under which these data were collected is: Mechanisms Controlling Species Limits in a Changing World. NRF/SASSCAL Grant number 118588

For information on the data or analysis please contact Sally Archibald: sally.archibald@wits.ac.za

Description of file(s):

File 1: cleanedData_forAnalysis.csv (required to run the R code: "finalAnalysis_PostClipResponses_Feb2021_requires_cleanData_forAnalysis_.R"

The data represent monthly survival and growth data for ~740 seedlings from 10 species under various levels of clipping.

The data consist of one .csv file with the following column names:

treatment Clipping treatment (1 - 5 months clip plus control unclipped) plot_rep One of three randomised plots per treatment matrix_no Where in the plot the individual was placed species_code First three letters of the genus name, and first three letters of the species name uniquely identifies the species species Full species name sample_period Classification of sampling period into time since clip. status Alive or Dead standing.height Vertical height above ground (in mm) height.mm Length of the longest branch (in mm) total.branch.length Total length of all the branches (in mm) stemdiam.mm Basal stem diameter (in mm) maxSpineLength.mm Length of the longest spine postclipStemNo Number of resprouting stems (only recorded AFTER clipping) date.clipped date.clipped date.measured date.measured date.germinated date.germinated Age.of.plant Date measured - Date germinated newtreat Treatment as a numeric variable, with 8 being the control plot (for plotting purposes)

File 2: Herbivory_SurvivalEndofSeason_march2017.csv (required to run the R code: "FinalAnalysisResultsSurvival_requires_Herbivory_SurvivalEndofSeason_march2017.R"

The data consist of one .csv file with the following column names:

treatment Clipping treatment (1 - 5 months clip plus control unclipped) plot_rep One of three randomised plots per treatment matrix_no Where in the plot the individual was placed species_code First three letters of the genus name, and first three letters of the species name uniquely identifies the species species Full species name sample_period Classification of sampling period into time since clip. status Alive or Dead standing.height Vertical height above ground (in mm) height.mm Length of the longest branch (in mm) total.branch.length Total length of all the branches (in mm) stemdiam.mm Basal stem diameter (in mm) maxSpineLength.mm Length of the longest spine postclipStemNo Number of resprouting stems (only recorded AFTER clipping) date.clipped date.clipped date.measured date.measured date.germinated date.germinated Age.of.plant Date measured - Date germinated newtreat Treatment as a numeric variable, with 8 being the control plot (for plotting purposes) genus Genus MAR Mean Annual Rainfall for that Species distribution (mm) rainclass High/medium/low

File 3: allModelParameters_byAge.csv (required to run the R code: "FinalModelSeedlingSurvival_June2021_.R"

Consists of a .csv file with the following column headings

Age.of.plant Age in days species_code Species pred_SD_mm Predicted stem diameter in mm pred_SD_up top 75th quantile of stem diameter in mm pred_SD_low bottom 25th quantile of stem diameter in mm treatdate date when clipped pred_surv Predicted survival probability pred_surv_low Predicted 25th quantile survival probability pred_surv_high Predicted 75th quantile survival probability species_code species code Bite.probability Daily probability of being eaten max_bite_diam_duiker_mm Maximum bite diameter of a duiker for this species duiker_sd standard deviation of bite diameter for a duiker for this species max_bite_diameter_kudu_mm Maximum bite diameer of a kudu for this species kudu_sd standard deviation of bite diameter for a kudu for this species mean_bite_diam_duiker_mm mean etc duiker_mean_sd standard devaition etc mean_bite_diameter_kudu_mm mean etc kudu_mean_sd standard deviation etc genus genus rainclass low/med/high

File 4: EatProbParameters_June2020.csv (required to run the R code: "FinalModelSeedlingSurvival_June2021_.R"

Consists of a .csv file with the following column headings

shtspec species name species_code species code genus genus rainclass low/medium/high seed mass mass of seed (g per 1000seeds)
Surv_intercept coefficient of the model predicting survival from age of clip for this species Surv_slope coefficient of the model predicting survival from age of clip for this species GR_intercept coefficient of the model predicting stem diameter from seedling age for this species GR_slope coefficient of the model predicting stem diameter from seedling age for this species species_code species code max_bite_diam_duiker_mm Maximum bite diameter of a duiker for this species duiker_sd standard deviation of bite diameter for a duiker for this species max_bite_diameter_kudu_mm Maximum bite diameer of a kudu for this species kudu_sd standard deviation of bite diameter for a kudu for this species mean_bite_diam_duiker_mm mean etc duiker_mean_sd standard devaition etc mean_bite_diameter_kudu_mm mean etc kudu_mean_sd standard deviation etc AgeAtEscape_duiker[t] age of plant when its stem diameter is larger than a mean duiker bite AgeAtEscape_duiker_min[t] age of plant when its stem diameter is larger than a min duiker bite AgeAtEscape_duiker_max[t] age of plant when its stem diameter is larger than a max duiker bite AgeAtEscape_kudu[t] age of plant when its stem diameter is larger than a mean kudu bite AgeAtEscape_kudu_min[t] age of plant when its stem diameter is larger than a min kudu bite AgeAtEscape_kudu_max[t] age of plant when its stem diameter is larger than a max kudu bite

post train nemotron dataset filtered for english only and reasoning on entries

Subscribers can find out export and import data of 23 countries by HS code or product’s name. This demo is helpful for market analysis.

--- Cleaning Summary --- Dataset : marcuscedricridia/jenna-filtered-polarity Human column used : prompt

Assistant column used : response

Initial size : 7034 After basic cleaning : 7034 After exact deduplication : 6031 After length filtering : 214 After language filtering : 204 After alignment filtering : 204 After boilerplate removal : 204 After near-duplicate… See the full description on the dataset page: https://huggingface.co/datasets/marcuscedricridia/jenna-filtered-polarity-deepclean.

marcuscedricridia/amoralqa-filtered-polarity

  Overview

This dataset is a filtered version of TheDrummer/AmoralQA-v2, created to isolate the most amoral entries based on sentiment analysis.

  Filtering Criteria

Entries were ranked based on their negative sentiment.
Only the most extreme cases were kept.
The filtering process used automated sentiment analysis to determine inclusion.

  Source & Citation

Original Dataset: TheDrummer/AmoralQA-v2… See the full description on the dataset page: https://huggingface.co/datasets/marcuscedricridia/amoralqa-filtered-polarity.

Data on vegetated filter strips, sediment loading into and out of riparian corridors/buffers (VFS), removal efficiency of sediment, meta-analysis of removal efficiencies, dimensional analysis of predictor variables, and regression modeling of VFS removal efficiencies. This dataset is associated with the following publication: Ramesh, R., L. Kalin, M. Hantush, and A. Chaudhary. A secondary assessment of sediment trapping effectiveness by vegetated buffers. ECOLOGICAL ENGINEERING. Elsevier Science Ltd, New York, NY, USA, 159: 106094, (2021).

Author: Andrew J. Felton
Date: 10/29/2024

This R project contains the primary code and data (following pre-processing in python) used for data production, manipulation, visualization, and analysis, and figure production for the study entitled:

"Global estimates of the storage and transit time of water through vegetation"

Please note that 'turnover' and 'transit' are used interchangeably. Also please note that this R project has been updated multiple times as the analysis has updated.

Data information:

The data folder contains key data sets used for analysis. In particular:

"data/turnover_from_python/updated/august_2024_lc/" contains the core datasets used in this study including global arrays summarizing five year (2016-2020) averages of mean (annual) and minimum (monthly) transit time, storage, canopy transpiration, and number of months of data able as both an array (.nc) or data table (.csv). These data were produced in python using the python scripts found in the "supporting_code" folder. The remaining files in the "data" and "data/supporting_data"" folder primarily contain ground-based estimates of storage and transit found in public databases or through a literature search, but have been extensively processed and filtered here. The "supporting_data"" folder also contains annual (2016-2020) MODIS land cover data used in the analysis and contains separate filters containing the original data (.hdf) and then the final process (filtered) data in .nc format. The resulting annual land cover distributions were used in the pre-processing of data in python.

#Code information

Python scripts can be found in the "supporting_code" folder.

Each R script in this project has a role:

"01_start.R": This script sets the working directory, loads in the tidyverse package (the remaining packages in this project are called using the `::` operator), and can run two other scripts: one that loads the customized functions (02_functions.R) and one for importing and processing the key dataset for this analysis (03_import_data.R).

"02_functions.R": This script contains custom functions. Load this using the
`source()` function in the 01_start.R script.

"03_import_data.R": This script imports and processes the .csv transit data. It joins the mean (annual) transit time data with the minimum (monthly) transit data to generate one dataset for analysis: annual_turnover_2. Load this using the
`source()` function in the 01_start.R script.

"04_figures_tables.R": This is the main workhouse for figure/table production and
supporting analyses. This script generates the key figures and summary statistics
used in the study that then get saved in the manuscript_figures folder. Note that all
maps were produced using Python code found in the "supporting_code"" folder.

"supporting_generate_data.R": This script processes supporting data used in the analysis, primarily the varying ground-based datasets of leaf water content.

"supporting_process_land_cover.R": This takes annual MODIS land cover distributions and processes them through a multi-step filtering process so that they can be used in preprocessing of datasets in python.

Pathogen diversity resulting in quasispecies can enable persistence and adaptation to host defenses and therapies. However, accurate quasispecies characterization can be impeded by errors introduced during sample handling and sequencing which can require extensive optimizations to overcome. We present complete laboratory and bioinformatics workflows to overcome many of these hurdles. The Pacific Biosciences single molecule real-time platform was used to sequence PCR amplicons derived from cDNA templates tagged with universal molecular identifiers (SMRT-UMI). Optimized laboratory protocols were developed through extensive testing of different sample preparation conditions to minimize between-template recombination during PCR and the use of UMI allowed accurate template quantitation as well as removal of point mutations introduced during PCR and sequencing to produce a highly accurate consensus sequence from each template. Handling of the large datasets produced from SMRT-UMI sequencing was facilitated by a novel bioinformatic pipeline, Probabilistic Offspring Resolver for Primer IDs (PORPIDpipeline), that automatically filters and parses reads by sample, identifies and discards reads with UMIs likely created from PCR and sequencing errors, generates consensus sequences, checks for contamination within the dataset, and removes any sequence with evidence of PCR recombination or early cycle PCR errors, resulting in highly accurate sequence datasets. The optimized SMRT-UMI sequencing method presented here represents a highly adaptable and established starting point for accurate sequencing of diverse pathogens. These methods are illustrated through characterization of human immunodeficiency virus (HIV) quasispecies. Methods This serves as an overview of the analysis performed on PacBio sequence data that is summarized in Analysis Flowchart.pdf and was used as primary data for the paper by Westfall et al. "Optimized SMRT-UMI protocol produces highly accurate sequence datasets from diverse populations – application to HIV-1 quasispecies" Five different PacBio sequencing datasets were used for this analysis: M027, M2199, M1567, M004, and M005 For the datasets which were indexed (M027, M2199), CCS reads from PacBio sequencing files and the chunked_demux_config files were used as input for the chunked_demux pipeline. Each config file lists the different Index primers added during PCR to each sample. The pipeline produces one fastq file for each Index primer combination in the config. For example, in dataset M027 there were 3–4 samples using each Index combination. The fastq files from each demultiplexed read set were moved to the sUMI_dUMI_comparison pipeline fastq folder for further demultiplexing by sample and consensus generation with that pipeline. More information about the chunked_demux pipeline can be found in the README.md file on GitHub. The demultiplexed read collections from the chunked_demux pipeline or CCS read files from datasets which were not indexed (M1567, M004, M005) were each used as input for the sUMI_dUMI_comparison pipeline along with each dataset's config file. Each config file contains the primer sequences for each sample (including the sample ID block in the cDNA primer) and further demultiplexes the reads to prepare data tables summarizing all of the UMI sequences and counts for each family (tagged.tar.gz) as well as consensus sequences from each sUMI and rank 1 dUMI family (consensus.tar.gz). More information about the sUMI_dUMI_comparison pipeline can be found in the paper and the README.md file on GitHub. The consensus.tar.gz and tagged.tar.gz files were moved from sUMI_dUMI_comparison pipeline directory on the server to the Pipeline_Outputs folder in this analysis directory for each dataset and appended with the dataset name (e.g. consensus_M027.tar.gz). Also in this analysis directory is a Sample_Info_Table.csv containing information about how each of the samples was prepared, such as purification methods and number of PCRs. There are also three other folders: Sequence_Analysis, Indentifying_Recombinant_Reads, and Figures. Each has an .Rmd file with the same name inside which is used to collect, summarize, and analyze the data. All of these collections of code were written and executed in RStudio to track notes and summarize results. Sequence_Analysis.Rmd has instructions to decompress all of the consensus.tar.gz files, combine them, and create two fasta files, one with all sUMI and one with all dUMI sequences. Using these as input, two data tables were created, that summarize all sequences and read counts for each sample that pass various criteria. These are used to help create Table 2 and as input for Indentifying_Recombinant_Reads.Rmd and Figures.Rmd. Next, 2 fasta files containing all of the rank 1 dUMI sequences and the matching sUMI sequences were created. These were used as input for the python script compare_seqs.py which identifies any matched sequences that are different between sUMI and dUMI read collections. This information was also used to help create Table 2. Finally, to populate the table with the number of sequences and bases in each sequence subset of interest, different sequence collections were saved and viewed in the Geneious program. To investigate the cause of sequences where the sUMI and dUMI sequences do not match, tagged.tar.gz was decompressed and for each family with discordant sUMI and dUMI sequences the reads from the UMI1_keeping directory were aligned using geneious. Reads from dUMI families failing the 0.7 filter were also aligned in Genious. The uncompressed tagged folder was then removed to save space. These read collections contain all of the reads in a UMI1 family and still include the UMI2 sequence. By examining the alignment and specifically the UMI2 sequences, the site of the discordance and its case were identified for each family as described in the paper. These alignments were saved as "Sequence Alignments.geneious". The counts of how many families were the result of PCR recombination were used in the body of the paper. Using Identifying_Recombinant_Reads.Rmd, the dUMI_ranked.csv file from each sample was extracted from all of the tagged.tar.gz files, combined and used as input to create a single dataset containing all UMI information from all samples. This file dUMI_df.csv was used as input for Figures.Rmd. Figures.Rmd used dUMI_df.csv, sequence_counts.csv, and read_counts.csv as input to create draft figures and then individual datasets for eachFigure. These were copied into Prism software to create the final figures for the paper.

Aqueous environmental DNA (eDNA) is an emerging efficient non-invasive tool for species inventory studies. To maximize performance of downstream quantitative PCR (qPCR) and next-generation sequencing (NGS) applications, quality and quantity of the starting material is crucial, calling for optimized capture, storage and extraction techniques of eDNA. Previous comparative studies for eDNA capture/storage have tested precipitation and 'open' filters. However, practical 'enclosed' filters which reduce unnecessary handling have not been included. Here, we fill this gap by comparing a filter capsule (Sterivex-GP polyethersulfone, pore size 0·22 μm, hereafter called SX) with commonly used methods. Our experimental set-up, covering altogether 41 treatments combining capture by precipitation or filtration with different preservation techniques and storage times, sampled one single lake (and a fish-free control pond). We selected documented capture methods that have successfully targeted a wide range of fauna. The eDNA was extracted using an optimized protocol modified from the DNeasy® Blood & Tissue kit (Qiagen). We measured total eDNA concentrations and Cq-values (cycles used for DNA quantification by qPCR) to target specific mtDNA cytochrome b (cyt b) sequences in two local keystone fish species. SX yielded higher amounts of total eDNA along with lower Cq-values than polycarbonate track-etched filters (PCTE), glass fibre filters (GF) or ethanol precipitation (EP). SX also generated lower Cq-values than cellulose nitrate filters (CN) for one of the target species. DNA integrity of SX samples did not decrease significantly after 2 weeks of storage in contrast to GF and PCTE. Adding preservative before storage improved SX results. In conclusion, we recommend SX filters (originally designed for filtering micro-organisms) as an efficient capture method for sampling macrobial eDNA. Ethanol or Longmire's buffer preservation of SX immediately after filtration is recommended. Preserved SX capsules may be stored at room temperature for at least 2 weeks without significant degradation. Reduced handling and less exposure to outside stress compared with other filters may contribute to better eDNA results. SX capsules are easily transported and enable eDNA sampling in remote and harsh field conditions as samples can be filtered/preserved on site.

This dataset supports filterNHP, an R package and web-based application for generating search filters to query scientific bibliographic sources (PubMed, PsycINFO, Web of Science) for non-human primate related publications. filterNHP can be found at: https://filterNHP.dpz.eu.

Biogeoclimatic Ecosystem Classification (BEC) system is the ecosystem classification adopted in the forest management within British Columbia based on vegetation, soil, and climate characteristics whereas Site Series is the smallest unit of the system. The Ministry of Forests, Lands, Natural Resource Operations and Rural Development held under the Government of British Columbia (“the Ministry”) developed a web-based tool known as BEC Map for maintaining and sharing the information of the BEC system, but the Site Series information was not included in the tool due to its quantity and complexity. In order to allow users to explore and interact with the information, this project aimed to develop a web-based tool with high data quality and flexibility to users for the Site Series classes using the “Shiny” and “Leaflet” packages in R. The project started with data classification and pre-processing of the raster images and attribute tables through identification of client requirements, spatial database design and data cleaning. After data transformation was conducted, spatial relationships among these data were developed for code development. The code development included the setting-up of web map and interactive tools for facilitating user friendliness and flexibility. The codes were further tested and enhanced to meet the requirements of the Ministry. The web-based tool provided an efficient and effective platform to present the complicated Site Series features with the use of Web Mapping System (WMS) in map rendering. Four interactive tools were developed to allow users to examine and interact with the information. The study also found that the mode filter performed well in data preservation and noise minimization but suffered from long processing time and creation of tiny sliver polygons.

This dataset reflects reported incidents of crime (with the exception of murders where data exists for each victim) that occurred in the City of Chicago from 2001 to present, minus the most recent seven days. Data is extracted from the Chicago Police Department's CLEAR (Citizen Law Enforcement Analysis and Reporting) system. In order to protect the privacy of crime victims, addresses are shown at the block level only and specific locations are not identified. Should you have questions about this dataset, you may contact the Research & Development Division of the Chicago Police Department at 312.745.6071 or RandD@chicagopolice.org. Disclaimer: These crimes may be based upon preliminary information supplied to the Police Department by the reporting parties that have not been verified. The preliminary crime classifications may be changed at a later date based upon additional investigation and there is always the possibility of mechanical or human error. Therefore, the Chicago Police Department does not guarantee (either expressed or implied) the accuracy, completeness, timeliness, or correct sequencing of the information and the information should not be used for comparison purposes over time. The Chicago Police Department will not be responsible for any error or omission, or for the use of, or the results obtained from the use of this information. All data visualizations on maps should be considered approximate and attempts to derive specific addresses are strictly prohibited. The Chicago Police Department is not responsible for the content of any off-site pages that are referenced by or that reference this web page other than an official City of Chicago or Chicago Police Department web page. The user specifically acknowledges that the Chicago Police Department is not responsible for any defamatory, offensive, misleading, or illegal conduct of other users, links, or third parties and that the risk of injury from the foregoing rests entirely with the user. The unauthorized use of the words "Chicago Police Department," "Chicago Police," or any colorable imitation of these words or the unauthorized use of the Chicago Police Department logo is unlawful. This web page does not, in any way, authorize such use. Data is updated daily Tuesday through Sunday. The dataset contains more than 65,000 records/rows of data and cannot be viewed in full in Microsoft Excel. Therefore, when downloading the file, select CSV from the Export menu. Open the file in an ASCII text editor, such as Wordpad, to view and search. To access a list of Chicago Police Department - Illinois Uniform Crime Reporting (IUCR) codes, go to http://data.cityofchicago.org/Public-Safety/Chicago-Police-Department-Illinois-Uniform-Crime-R/c7ck-438e

This paper develops a new model for the analysis of stochastic volatility (SV) models. Since volatility is a latent variable in SV models, it is difficult to evaluate the exact likelihood. In this paper, a non-linear filter which yields the exact likelihood of SV models is employed. Solving a series of integrals in this filter by piecewise linear approximations with randomly chosen nodes produces the likelihood, which is maximized to obtain estimates of the SV parameters. A smoothing algorithm for volatility estimation is also constructed. Monte Carlo experiments show that the method performs well with respect to both parameter estimates and volatility estimates. We illustrate our model by analysing daily stock returns on the Tokyo Stock Exchange. Since the method can be applied to more general models, the SV model is extended so that several characteristics of daily stock returns are allowed, and this more general model is also estimated.

The Filter Bank is part of the Digital fields board and provides band-pass filtering for EFI and SCM spectra as well as E12HF peak and average value calculations. The Filter Bank provides band-pass filtering for less computationally and power intensive spectra than the FFT would provide. The process is as follows: Signals are fed to the Filter Bank via a low-pass FIR filter with a cut-off frequency half that of the original signal maximum. The output is passed to the band-pass filters, is differenced from the original signal, then absolute value of the data is taken and averaged. The output from the low-pass filter is also sent to a second FIR filter with 2:1 decimation. This output is then fed back through the system. The process runs through 12 cascades for input at 8,192 samples/s and 13 for input at 16,384 samples/sec (EAC input only), reducing the signal and computing power by a factor 2 at each cascade. At each cascade a set of data is produced at a sampling frequency of 2^n from 2 Hz to the initial sampling frequency (frequency characteristics for each step are shown below in Table 1). The average from the Filter Bank is compressed to 8 bits with a pseudo-logarithmic encoder. The data is stored in sets of six frequency bins at 2.689 kHz, 572 Hz, 144.2 Hz, 36.2 Hz, 9.05 Hz, and 2.26 Hz. The average of the coupled E12HF signal and it's peak value are recorded over 62.5 ms windows (i.e. a 16 Hz sampling rate). Accumulation of values from signal 31.25 ms windows is performed externally. The analog signals fed into the FBK are E12DC and SCM1. Sensor and electronics design provided by UCB (J. W. Bonnell, F. S. Mozer), Digital Fields Board provided by LASP (R. Ergun), Search coil data provided by CETP (A. Roux). Table 1: Frequency Properties. Cascade Frequency content of Input Signal Low-pass Filter Cutoff Frequency Freuency Content of Low-pass Output Signal Filter Bank Frequency Band 0* 0 - 8 kHz 4 kHz 0 - 4 kHz 4 - 8 kHz 1 0 - 4 kHz 2 kHz 0 - 2 kHz 2 - 4 kHz 2 0 - 2 kHz 1 kHz 0 - 1 kHz 1 - 2 kHz 3 0 - 1 kHz 512 Hz 0 - 512 Hz 512 Hz - 1 kHz 4 0 - 512 Hz 256 Hz 0 - 256 Hz 256 - 512 Hz 5 0 - 256 Hz 128 Hz 0 - 128 Hz 128 - 256 Hz 6 0 - 128 Hz 64 Hz 0 - 64 Hz 64 - 128 Hz 7 0 - 64 Hz 32 Hz 0 - 32 Hz 32 - 64 Hz 8 0 - 32 Hz 16 Hz 0 - 16 Hz 16 - 32 Hz 9 0 - 16 Hz 8 Hz 0 - 8 Hz 8 - 16 Hz 10 0 - 8 Hz 4 Hz 0 - 4 Hz 4 - 8 Hz 11 0 - 4 Hz 2 Hz 0 - 2 Hz 2 - 4 Hz 12 0 - 2 Hz 1 Hz 0 - 1 Hz 1 - 2 Hz *Only available for 16,384 Hz sampling.

This dataset reflects reported incidents of crime (with the exception of murders where data exists for each victim) that occurred in the City of Chicago from 2001 to present, minus the most recent seven days. Data is extracted from the Chicago Police Department's CLEAR (Citizen Law Enforcement Analysis and Reporting) system. In order to protect the privacy of crime victims, addresses are shown at the block level only and specific locations are not identified. Should you have questions about this dataset, you may contact the Research & Development Division of the Chicago Police Department at 312.745.6071 or RandD@chicagopolice.org. Disclaimer: These crimes may be based upon preliminary information supplied to the Police Department by the reporting parties that have not been verified. The preliminary crime classifications may be changed at a later date based upon additional investigation and there is always the possibility of mechanical or human error. Therefore, the Chicago Police Department does not guarantee (either expressed or implied) the accuracy, completeness, timeliness, or correct sequencing of the information and the information should not be used for comparison purposes over time. The Chicago Police Department will not be responsible for any error or omission, or for the use of, or the results obtained from the use of this information. All data visualizations on maps should be considered approximate and attempts to derive specific addresses are strictly prohibited. The Chicago Police Department is not responsible for the content of any off-site pages that are referenced by or that reference this web page other than an official City of Chicago or Chicago Police Department web page. The user specifically acknowledges that the Chicago Police Department is not responsible for any defamatory, offensive, misleading, or illegal conduct of other users, links, or third parties and that the risk of injury from the foregoing rests entirely with the user. The unauthorized use of the words "Chicago Police Department," "Chicago Police," or any colorable imitation of these words or the unauthorized use of the Chicago Police Department logo is unlawful. This web page does not, in any way, authorize such use. Data is updated daily Tuesday through Sunday. The dataset contains more than 65,000 records/rows of data and cannot be viewed in full in Microsoft Excel. Therefore, when downloading the file, select CSV from the Export menu. Open the file in an ASCII text editor, such as Wordpad, to view and search. To access a list of Chicago Police Department - Illinois Uniform Crime Reporting (IUCR) codes, go to http://data.cityofchicago.org/Public-Safety/Chicago-Police-Department-Illinois-Uniform-Crime-R/c7ck-438e

Additional file 4. Example code for real data example for programming language R.

CSV file containing the filtered benthic macroinvertebrate occurrence data used to generate range maps. NARS source data available through the NARS Data Download Tool (https://owshiny.epa.gov/nars-data-download/).