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The National Vegetation Survey Databank (NVS) is a physical archive and electronic databank containing records of over 121,000 vegetation survey plots - including data from over 25,000 permanent plots. These data can be explored online as well as requested for download. NVS provides a unique record, spanning more than 70 years, of indigenous and exotic plants in New Zealand's terrestrial ecosystems, from Northland to Stewart Island and the Kermadec and Chatham islands. A broad range of habitats are covered, with special emphasis on indigenous forests and grasslands. The physical archive includes plot sheets, maps, and photographs from many years of vegetation surveys.
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TwitterThe Global Biodiversity Information Facility (GBIF) is an international network and data infrastructure funded by the world's governments providing global data that document the occurrence of species. GBIF currently integrates datasets documenting over 1.6 billion species occurrences, growing daily. The GBIF occurrence dataset combines data from a wide array of sources including specimen-related data from natural history museums, observations from citizen science networks and environment recording schemes. While these data are constantly changing at GBIF.org, periodic snapshots are taken and made available on AWS.
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TwitterNew Zealand Inventory of Biodiversity, all relevant taxa to New Zealand.
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The focus of the NZAC is on terrestrial insects, mites and nematodes from the New Zealand region but there are substantial holdings from South Pacific countries. Material comes from the 1880s to the present day. There are over 1.2 million pinned insects, ~80,00 microscope slides, and 250,000 vials of ethanol preserved specimens. The collection is held in Auckland as is administered by Manaaki Whenua-Landcare Research as a group within the Bioeconomy Science Institute. Biocultural (BC) Notice. The BC (Biocultural) Notice is a visible notification that there are accompanying cultural rights and responsibilities that need further attention for any future sharing and use of this material or data. The BC Notice recognizes the rights of Indigenous peoples to permission the use of information, collections, data and digital sequence information (DSI) generated from the biodiversity or genetic resources associated with traditional lands, waters, and territories. The BC Notice may indicate that BC Labels are in development and their implementation is being negotiated.
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Dataset that provides a direct link to PNG's data hosted on the GBIF website/ records.
Contact emails: info@gbif.org / helpdesk@gbif.org
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The GBIF Backbone Taxonomy is a single, synthetic management classification with the goal of covering all names GBIF is dealing with. It's the taxonomic backbone that allows GBIF to integrate name based information from different resources, no matter if these are occurrence datasets, species pages, names from nomenclators or external sources like EOL, Genbank or IUCN. This backbone allows taxonomic search, browse and reporting operations across all those resources in a consistent way and to provide means to crosswalk names from one source to another.
It is updated regulary through an automated process in which the Catalogue of Life acts as a starting point also providing the complete higher classification above families. Additional scientific names only found in other authoritative nomenclatural and taxonomic datasets are then merged into the tree, thus extending the original catalogue and broadening the backbones name coverage. The GBIF Backbone taxonomy also includes identifiers for Operational Taxonomic Units (OTUs) drawn from the barcoding resources iBOL and UNITE.
International Barcode of Life project (iBOL), Barcode Index Numbers (BINs). BINs are connected to a taxon name and its classification by taking into account all names applied to the BIN and picking names with at least 80% consensus. If there is no consensus of name at the species level, the selection process is repeated moving up the major Linnaean ranks until consensus is achieved.
UNITE - Unified system for the DNA based fungal species, Species Hypotheses (SHs). SHs are connected to a taxon name and its classification based on the determination of the RefS (reference sequence) if present or the RepS (representative sequence). In the latter case, if there is no match in the UNITE taxonomy, the lowest rank with 100% consensus within the SH will be used.
The GBIF Backbone Taxonomy is available for download at https://hosted-datasets.gbif.org/datasets/backbone/ in different formats together with an archive of all previous versions.
The following 105 sources have been used to assemble the GBIF backbone with number of names given in brackets:
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Culture data from the International Collection of Microorganisms from Plants (ICMP).
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Occurrence of naturalised plant species within each of New Zealand's 16 mainland political regions according to records in the Global Biodiversity Information Facility (GBIF.org). An automated download of GBIF records was conducted in August 2020 for the complete naturalised plant list according to the Nga Tipu o Aotearoa vascular flora checklist of 2020.
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Comprises over 2,000 invasive plant observations from Department of Conservation, New Zealand herbaria, and regional councils. Data held by NIWA.
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Tagging programmes have been used to provide information on fish and fisheries to central government policy makers in New Zealand for many years. A wide variety of species have been the subject of such studies, including finfish, shellfish and rock lobsters. In New Zealand, the Ministry for Primary Industries (formerly the Ministry of Fisheries) has funded these programmes to aid with fisheries research and stock assessment. Data from these programme are held in the "tag" database, from which the data in this dataset are sourced.
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Specimen data from the New Zealand Fungal and Plant Disease Collection (PDD), Landcare Research, New Zealand.
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Specimen records from the New Zealand Arthropod Collection (NZAC).
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The NIWA Invertebrate Collection (NIC) holds specimens from almost all invertebrate phyla. This is a result of about half a century of marine taxonomic and biodiversity research in the New Zealand region, the South West Pacific and the Ross Sea, Antarctica.
New Zealand lies in the South West Pacific, a region that harbours one of the world’s highest species diversity in some marine invertebrate groups with a high proportion of endemic species (that don't occur anywhere else). This huge diversity is, among other things, related to the variable seafloor relief and New Zealand’s ancient geological history. NIWA is fortunate to hold a significant representation of New Zealand’s marine biodiversity in the NIWA Invertebrate Collection at Greta Point in Wellington.
This collection has had the taxa matched to the World Register of Marine Species (WoRMS). There are taxa that have no match in WoRMS as thet are temporary or unpublished names. These records do not a scientificNameId field populated. There are also many records that have no position information. Many of these are donated specimens.
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This dataset originally held 5 647 442 total records, where 34% of the records corresponded to germplasm accessions and 66% to herbarium samples. A total of 3 231 286 records had cross-checked coordinates (see Figure 2). 322 735 records were newly georeferenced using The Google Geocoding API and 15 713 new records were obtained after digitizing the information contained in herbaria specimens. Data was gathered from more than 100 data providers, including GBIF (a comprehensive list of institutions and individuals is available here: http://www.cwrdiversity.org/data-sources/ ).
The geographic coverage of the dataset includes 96% of the world countries and also includes records of cultivated plants (1/3 of the dataset). Records of the crop wild relatives of 80 crop gene pools can be queried and visualized in this interactive map: http://www.cwrdiversity.org/distribution-map/
This dataset was assembled as part of the project ‘Adapting Agriculture to Climate Change: Collecting, Protecting and Preparing Crop Wild Relatives’, which is supported by the Government of Norway. The project is managed by the Global Crop Diversity Trust and the Millennium Seed Bank of the Royal Botanic Gardens, Kew, and implemented in partnership with national and international genebanks and plant breeding institutes around the world. For further information, please refer to the project website: http://www.cwrdiversity.org/
For publication to GBIF, all records originally gathered from GBIF have been removed to avoid data duplication.
Citation: Crop Wild Relatives Occurrence data consortia ([year]). A global database for the distributions of crop wild relatives. Centro Internacional de Agricultura Tropical (CIAT). Occurrence dataset https://doi.org/10.15468/jyrthk accessed via GBIF.org on [date].
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The dataset contains details of the biota caught during plankton surveys around New Zealand and the south western Pacific although some occurrence data is included from other oceans sourced from the digitisation of journal articles from New Zealand authors. A large source from this dataset is provided by the New Zealand Ministry of Primary Industries from its "plankton" and "rocklob" databases. This dataset records all biological specimens collected during plankton sampling including fish, larvae, and eggs. This dataset does not include and data from Constant Plankton Recorders.
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The Global Register of Introduced and Invasive Species (GRIIS) presents validated and verified national checklists of introduced (alien) and invasive alien species at the country, territory, and associated island level. Checklists are living entities, especially for biological invasions given the growing nature of the problem. GRIIS checklists are based on a published methodology and supported by the Integrated Publishing Tool that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. Phase 1 of the project focused on developing validated and verified checklists of countries that are Party to the Convention on Biological Diversity (CBD). Phase 2 aimed to achieve global coverage including non-party countries and all overseas territories of countries, e.g. those of the Netherlands, France, and the United Kingdom. All kingdoms of organisms occurring in all environments and systems are covered. Checklists are reviewed and verified by networks of country or species experts. Verified checklists/ species records, as well as those under review, are presented on the online GRIIS website (www.griis.org) in addition to being published through the GBIF Integrated Publishing Tool.
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Specimen records from the New Zealand National Forestry Herbarium.
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The New Zealand Freshwater Fish Database (NZFFD) records the occurrence of fish in fresh waters of New Zealand, including major offshore islands. We maintain the database at our Wellington campus. Data stored include the site location, the species present, their abundance and size, as well as information such as the fishing method used and a physical description of the site. The latter includes an assessment of the habitat type, substrate type, available fish cover, catchment vegetation, riparian vegetation, water widths and depths, and some water quality measures.
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Over the past 20+ years the Cawthron Institute has accumulated a large store of information on the nation-wide distribution of freshwater invertebrates and algae. This dataset covers 20 years worth of macoinvertebrate and algal samples processed by Cawthron for regional councils State of the Environment monitoring, funded research work, resource compliance monitoring surveys, and assessments of environmental effects.
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TwitterThe New Zealand Terrestrial Antarctic Biocomplexity Survey (nzTABS) is the largest and most comprehensive interdisciplinary landscape-scale study of terrestrial biology ever undertaken in Antarctica, incorporating fieldwork of 1500+ person days in 6 of the Dry Valleys (total area of 6500 km2), strategic sampling of over 1200 sites designed to encompass the landscape heterogeneities in the ecosystem, and a range of high-resolution remote sensing data. The central goal of nzTABS is to determine the primary abiotic drivers of biodiversity in the Dry Valleys, one of few ecosystems where such undertaking can be achieved. With the aid of a comprehensive GIS framework, we are on track to achieve this goal by examining community microbial sequence data in conjunction with a broad range of physicochemical parameters. This project currently involves over 29 senior investigators from 9 countries that encompass disciplines from geochemistry and geomorphology to population genetics and microbial ecology.
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The National Vegetation Survey Databank (NVS) is a physical archive and electronic databank containing records of over 121,000 vegetation survey plots - including data from over 25,000 permanent plots. These data can be explored online as well as requested for download. NVS provides a unique record, spanning more than 70 years, of indigenous and exotic plants in New Zealand's terrestrial ecosystems, from Northland to Stewart Island and the Kermadec and Chatham islands. A broad range of habitats are covered, with special emphasis on indigenous forests and grasslands. The physical archive includes plot sheets, maps, and photographs from many years of vegetation surveys.