30 datasets found
  1. Simulation Data Set

    • catalog.data.gov
    • s.cnmilf.com
    Updated Nov 12, 2020
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    U.S. EPA Office of Research and Development (ORD) (2020). Simulation Data Set [Dataset]. https://catalog.data.gov/dataset/simulation-data-set
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    Dataset updated
    Nov 12, 2020
    Dataset provided by
    United States Environmental Protection Agencyhttp://www.epa.gov/
    Description

    These are simulated data without any identifying information or informative birth-level covariates. We also standardize the pollution exposures on each week by subtracting off the median exposure amount on a given week and dividing by the interquartile range (IQR) (as in the actual application to the true NC birth records data). The dataset that we provide includes weekly average pregnancy exposures that have already been standardized in this way while the medians and IQRs are not given. This further protects identifiability of the spatial locations used in the analysis. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: File format: R workspace file; “Simulated_Dataset.RData”. Metadata (including data dictionary) • y: Vector of binary responses (1: adverse outcome, 0: control) • x: Matrix of covariates; one row for each simulated individual • z: Matrix of standardized pollution exposures • n: Number of simulated individuals • m: Number of exposure time periods (e.g., weeks of pregnancy) • p: Number of columns in the covariate design matrix • alpha_true: Vector of “true” critical window locations/magnitudes (i.e., the ground truth that we want to estimate) Code Abstract We provide R statistical software code (“CWVS_LMC.txt”) to fit the linear model of coregionalization (LMC) version of the Critical Window Variable Selection (CWVS) method developed in the manuscript. We also provide R code (“Results_Summary.txt”) to summarize/plot the estimated critical windows and posterior marginal inclusion probabilities. Description “CWVS_LMC.txt”: This code is delivered to the user in the form of a .txt file that contains R statistical software code. Once the “Simulated_Dataset.RData” workspace has been loaded into R, the text in the file can be used to identify/estimate critical windows of susceptibility and posterior marginal inclusion probabilities. “Results_Summary.txt”: This code is also delivered to the user in the form of a .txt file that contains R statistical software code. Once the “CWVS_LMC.txt” code is applied to the simulated dataset and the program has completed, this code can be used to summarize and plot the identified/estimated critical windows and posterior marginal inclusion probabilities (similar to the plots shown in the manuscript). Optional Information (complete as necessary) Required R packages: • For running “CWVS_LMC.txt”: • msm: Sampling from the truncated normal distribution • mnormt: Sampling from the multivariate normal distribution • BayesLogit: Sampling from the Polya-Gamma distribution • For running “Results_Summary.txt”: • plotrix: Plotting the posterior means and credible intervals Instructions for Use Reproducibility (Mandatory) What can be reproduced: The data and code can be used to identify/estimate critical windows from one of the actual simulated datasets generated under setting E4 from the presented simulation study. How to use the information: • Load the “Simulated_Dataset.RData” workspace • Run the code contained in “CWVS_LMC.txt” • Once the “CWVS_LMC.txt” code is complete, run “Results_Summary.txt”. Format: Below is the replication procedure for the attached data set for the portion of the analyses using a simulated data set: Data The data used in the application section of the manuscript consist of geocoded birth records from the North Carolina State Center for Health Statistics, 2005-2008. In the simulation study section of the manuscript, we simulate synthetic data that closely match some of the key features of the birth certificate data while maintaining confidentiality of any actual pregnant women. Availability Due to the highly sensitive and identifying information contained in the birth certificate data (including latitude/longitude and address of residence at delivery), we are unable to make the data from the application section publically available. However, we will make one of the simulated datasets available for any reader interested in applying the method to realistic simulated birth records data. This will also allow the user to become familiar with the required inputs of the model, how the data should be structured, and what type of output is obtained. While we cannot provide the application data here, access to the North Carolina birth records can be requested through the North Carolina State Center for Health Statistics, and requires an appropriate data use agreement. Description Permissions: These are simulated data without any identifying information or informative birth-level covariates. We also standardize the pollution exposures on each week by subtracting off the median exposure amount on a given week and dividing by the interquartile range (IQR) (as in the actual application to the true NC birth records data). The dataset that we provide includes weekly average pregnancy exposures that have already been standardized in this way while the medians and IQRs are not given. This further protects identifiability of the spatial locations used in the analysis. This dataset is associated with the following publication: Warren, J., W. Kong, T. Luben, and H. Chang. Critical Window Variable Selection: Estimating the Impact of Air Pollution on Very Preterm Birth. Biostatistics. Oxford University Press, OXFORD, UK, 1-30, (2019).

  2. f

    Medians (M) and inter-quartile ranges (IQR) of maximum likelihood parameter...

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    xls
    Updated May 31, 2023
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    Jan Peters; Stephan Franz Miedl; Christian Büchel (2023). Medians (M) and inter-quartile ranges (IQR) of maximum likelihood parameter estimates for the five discounting models examined (see Table 1 for model equations, numbers and abbreviations). [Dataset]. http://doi.org/10.1371/journal.pone.0047225.t002
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    xlsAvailable download formats
    Dataset updated
    May 31, 2023
    Dataset provided by
    PLOS ONE
    Authors
    Jan Peters; Stephan Franz Miedl; Christian Büchel
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Parameters are shown separately for the three different datasets (1, 2, pathological gamblers [PG]).

  3. o

    Data from: Prioritization of barriers that hinders Local Flexibility Market...

    • explore.openaire.eu
    • research.science.eus
    Updated May 31, 2020
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    Koldo Zabaleta; Diego Casado-Mansilla; Cruz E. Cruz E.Borges; Evgenia Kapassa; Guntram Preßmair; Marilena Stathopoulou; Diego López-de-Ipiña (2020). Prioritization of barriers that hinders Local Flexibility Market proliferation [Dataset]. http://doi.org/10.5281/zenodo.3855545
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    Dataset updated
    May 31, 2020
    Authors
    Koldo Zabaleta; Diego Casado-Mansilla; Cruz E. Cruz E.Borges; Evgenia Kapassa; Guntram Preßmair; Marilena Stathopoulou; Diego López-de-Ipiña
    Description

    This dataset contains the prioritization provided by a panel of 15 experts to a set of 28 barriers categories for 8 different roles of the future energy system. A Delphi method was followed and the scores provided in the three rounds carried out are included. The dataset also contains the scripts used to assess the results and the output of this assessment. A list of the information contained in this file is: data folder: this folders includes the scores given by the 15 experts in the 3 rounds. Every round is in an individual folder. There is a file per expert that has the scores between -5 (not relevant at all) to 5 (completely relevant) per barrier (rows) and actor (columns). There is also a file with the description of the experts in terms of their position in the company, the type of company and the country. fig folder: this folder includes the figures created to assess the information provided by the experts. For each round, the following figures are created (in each respective folder): Boxplot with the distribution of scores per barriers and roles. Heatmap with the mean scores per barriers and roles. Boxplots with the comparison of the different distributions provided by the experts of each group (depending on the keywords) per barrier and role. Heatmap with the mean score per barrier weighted depeding on the importance of the role in each use case and the final prioritization. Finally, bar plots with the mean scores differences between rounds and boxplot with comparisons of the scores distributions are also provided. stat folder: this folder includes the files with the results of the different statistical assessment carried out. For each round, the following figures are created (in each respective folder): The statistics used to assess the scores (Intraclass correlation coefficient, Inter-rater agreement, Inter-rater agreement p-value, Homogeneity of Variances, Average interquartile range, Standard Deviation of interquartile ranges, Friedman test p-value Average power post hoc) per barrier and per role. The results of the post hoc of the Friedman Test per berries and per roles. The average score per barrier and per role. The mean value of the scores provided by the experts grouped by the keywords per barrier and role. P-value of the comparison of these two values. The end prioritization of the barrier for the use case (averaging the scores or fuzzy merging of the critical sets) Finally, the differences between the mean and standard deviations of the scores between two consecutive rounds are provided.

  4. f

    Travel time to cities and ports in the year 2015

    • figshare.com
    tiff
    Updated May 30, 2023
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    Andy Nelson (2023). Travel time to cities and ports in the year 2015 [Dataset]. http://doi.org/10.6084/m9.figshare.7638134.v4
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    tiffAvailable download formats
    Dataset updated
    May 30, 2023
    Dataset provided by
    figshare
    Authors
    Andy Nelson
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    The dataset and the validation are fully described in a Nature Scientific Data Descriptor https://www.nature.com/articles/s41597-019-0265-5

    If you want to use this dataset in an interactive environment, then use this link https://mybinder.org/v2/gh/GeographerAtLarge/TravelTime/HEAD

    The following text is a summary of the information in the above Data Descriptor.

    The dataset is a suite of global travel-time accessibility indicators for the year 2015, at approximately one-kilometre spatial resolution for the entire globe. The indicators show an estimated (and validated), land-based travel time to the nearest city and nearest port for a range of city and port sizes.

    The datasets are in GeoTIFF format and are suitable for use in Geographic Information Systems and statistical packages for mapping access to cities and ports and for spatial and statistical analysis of the inequalities in access by different segments of the population.

    These maps represent a unique global representation of physical access to essential services offered by cities and ports.

    The datasets travel_time_to_cities_x.tif (where x has values from 1 to 12) The value of each pixel is the estimated travel time in minutes to the nearest urban area in 2015. There are 12 data layers based on different sets of urban areas, defined by their population in year 2015 (see PDF report).

    travel_time_to_ports_x (x ranges from 1 to 5)

    The value of each pixel is the estimated travel time to the nearest port in 2015. There are 5 data layers based on different port sizes.

    Format Raster Dataset, GeoTIFF, LZW compressed Unit Minutes

    Data type Byte (16 bit Unsigned Integer)

    No data value 65535

    Flags None

    Spatial resolution 30 arc seconds

    Spatial extent

    Upper left -180, 85

    Lower left -180, -60 Upper right 180, 85 Lower right 180, -60 Spatial Reference System (SRS) EPSG:4326 - WGS84 - Geographic Coordinate System (lat/long)

    Temporal resolution 2015

    Temporal extent Updates may follow for future years, but these are dependent on the availability of updated inputs on travel times and city locations and populations.

    Methodology Travel time to the nearest city or port was estimated using an accumulated cost function (accCost) in the gdistance R package (van Etten, 2018). This function requires two input datasets: (i) a set of locations to estimate travel time to and (ii) a transition matrix that represents the cost or time to travel across a surface.

    The set of locations were based on populated urban areas in the 2016 version of the Joint Research Centre’s Global Human Settlement Layers (GHSL) datasets (Pesaresi and Freire, 2016) that represent low density (LDC) urban clusters and high density (HDC) urban areas (https://ghsl.jrc.ec.europa.eu/datasets.php). These urban areas were represented by points, spaced at 1km distance around the perimeter of each urban area.

    Marine ports were extracted from the 26th edition of the World Port Index (NGA, 2017) which contains the location and physical characteristics of approximately 3,700 major ports and terminals. Ports are represented as single points

    The transition matrix was based on the friction surface (https://map.ox.ac.uk/research-project/accessibility_to_cities) from the 2015 global accessibility map (Weiss et al, 2018).

    Code The R code used to generate the 12 travel time maps is included in the zip file that can be downloaded with these data layers. The processing zones are also available.

    Validation The underlying friction surface was validated by comparing travel times between 47,893 pairs of locations against journey times from a Google API. Our estimated journey times were generally shorter than those from the Google API. Across the tiles, the median journey time from our estimates was 88 minutes within an interquartile range of 48 to 143 minutes while the median journey time estimated by the Google API was 106 minutes within an interquartile range of 61 to 167 minutes. Across all tiles, the differences were skewed to the left and our travel time estimates were shorter than those reported by the Google API in 72% of the tiles. The median difference was −13.7 minutes within an interquartile range of −35.5 to 2.0 minutes while the absolute difference was 30 minutes or less for 60% of the tiles and 60 minutes or less for 80% of the tiles. The median percentage difference was −16.9% within an interquartile range of −30.6% to 2.7% while the absolute percentage difference was 20% or less in 43% of the tiles and 40% or less in 80% of the tiles.

    This process and results are included in the validation zip file.

    Usage Notes The accessibility layers can be visualised and analysed in many Geographic Information Systems or remote sensing software such as QGIS, GRASS, ENVI, ERDAS or ArcMap, and also by statistical and modelling packages such as R or MATLAB. They can also be used in cloud-based tools for geospatial analysis such as Google Earth Engine.

    The nine layers represent travel times to human settlements of different population ranges. Two or more layers can be combined into one layer by recording the minimum pixel value across the layers. For example, a map of travel time to the nearest settlement of 5,000 to 50,000 people could be generated by taking the minimum of the three layers that represent the travel time to settlements with populations between 5,000 and 10,000, 10,000 and 20,000 and, 20,000 and 50,000 people.

    The accessibility layers also permit user-defined hierarchies that go beyond computing the minimum pixel value across layers. A user-defined complete hierarchy can be generated when the union of all categories adds up to the global population, and the intersection of any two categories is empty. Everything else is up to the user in terms of logical consistency with the problem at hand.

    The accessibility layers are relative measures of the ease of access from a given location to the nearest target. While the validation demonstrates that they do correspond to typical journey times, they cannot be taken to represent actual travel times. Errors in the friction surface will be accumulated as part of the accumulative cost function and it is likely that locations that are further away from targets will have greater a divergence from a plausible travel time than those that are closer to the targets. Care should be taken when referring to travel time to the larger cities when the locations of interest are extremely remote, although they will still be plausible representations of relative accessibility. Furthermore, a key assumption of the model is that all journeys will use the fastest mode of transport and take the shortest path.

  5. o

    Data from: Prioritization of barriers that hinders Local Flexibility Market...

    • explore.openaire.eu
    Updated May 31, 2020
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    Koldo Salabarrieta; Cruz E. Cruz E.Borges; Diego Casado-Mansilla; Evgenia Kapassa; Guntram Preßmair; Diego López-de-Ipiña (2020). Prioritization of barriers that hinders Local Flexibility Market proliferation [Dataset]. http://doi.org/10.5281/zenodo.3855546
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    Dataset updated
    May 31, 2020
    Authors
    Koldo Salabarrieta; Cruz E. Cruz E.Borges; Diego Casado-Mansilla; Evgenia Kapassa; Guntram Preßmair; Diego López-de-Ipiña
    Description

    This dataset contains the prioritization provided by a panel of 15 experts to a set of 28 barriers categories for 8 different roles of the future energy system. A Delphi method was followed and the scores provided in the three rounds carried out are included. The dataset also contains the scripts used to assess the results and the output of this assessment. A list of the information contained in this file is: data folder: this folders includes the scores given by the 15 experts in the 3 rounds. Every round is in an individual folder. There is a file per expert that has the scores between -5 (not relevant at all) to 5 (completely relevant) per barrier (rows) and actor (columns). There is also a file with the description of the experts in terms of their position in the company, the type of company and the country. fig folder: this folder includes the figures created to assess the information provided by the experts. For each round, the following figures are created (in each respective folder): Boxplot with the distribution of scores per barriers and roles. Heatmap with the mean scores per barriers and roles. Boxplots with the comparison of the different distributions provided by the experts of each group (depending on the keywords) per barrier and role. Heatmap with the mean score per barrier and use case and with the prioritization per barrier and use case. Finally, bar plots with the mean scores differences between rounds and boxplot with comparisons of the scores distributions are also provided. stat folder: this folder includes the files with the results of the different statistical assessment carried out. For each round, the following figures are created (in each respective folder): The statistics used to assess the scores (Intraclass correlation coefficient, Inter-rater agreement, Inter-rater agreement p-value, Homogeneity of Variances, Average interquartile range, Standard Deviation of interquartile ranges, Friedman test p-value Average power post hoc) per barrier and per role. The results of the post hoc of the Friedman Test per berries and per roles. The average score per barrier and per role. The mean value of the scores provided by the experts grouped by the keywords per barrier and role. P-value of the comparison of these two values. The end prioritization of the barrier for the use case (averaging the scores or merging the critical sets) Finally, the differences between the mean and standard deviations of the scores between two consecutive rounds are provided.

  6. Dataset related to article "Can thoracic nodes oligometastases be safely...

    • zenodo.org
    Updated Mar 13, 2020
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    Franceschini D; Bianciardi F; Mazzola R; De Rose F; Gentile P; Alongi F; Scorsetti M; Scorsetti M; Franceschini D; Bianciardi F; Mazzola R; De Rose F; Gentile P; Alongi F (2020). Dataset related to article "Can thoracic nodes oligometastases be safely treated with image guided hypofractionated radiation therapy?" [Dataset]. http://doi.org/10.5281/zenodo.3709828
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    Dataset updated
    Mar 13, 2020
    Dataset provided by
    Zenodohttp://zenodo.org/
    Authors
    Franceschini D; Bianciardi F; Mazzola R; De Rose F; Gentile P; Alongi F; Scorsetti M; Scorsetti M; Franceschini D; Bianciardi F; Mazzola R; De Rose F; Gentile P; Alongi F
    Description

    OBJECTIVE:

    To evaluate safety and efficacy of image guided-hypofractionated radiation therapy (IG-HRT) in patients with thoracic nodes oligometastases.

    METHODS:

    The present study is a multicenter analysis. Oligometastatic patients, affected by a maximum of five active lesions in three or less different organs, treated with IG-HRT to thoracic nodes metastases between 2012 and 2017 were included in the analysis. Primary end point was local control (LC), secondary end points were overall survival (OS), progression-free survival, acute and late toxicity. Univariate and multivariate analysis were performed to identify possible prognostic factors for the survival end points.

    RESULTS:

    76 patients were included in the analysis. Different RT dose and fractionation schedules were prescribed according to site, number, size of the lymph node(s) and to respect dose constraints for relevant organs at risk. Median biologically effective dose delivered was 75 Gy (interquartile range: 59-86 Gy). Treatment was optimal; one G1 acute toxicity and seven G1 late toxicities of any grade were recorded. Median follow-up time was 23.16 months. 16 patients (21.05%) had a local progression, while 52 patients progressed in distant sites (68.42 %).Median local relapse free survival was not reached, LC at 6, 12 and 24 months was 96.05% [confidence interval (CI) 88.26-98.71%], 86.68% (CI 75.86-92.87) and 68.21% (CI 51.89-80.00%), respectively. Median OS was 28.3 months (interquartile range 16.1-47.2). Median progression-freesurvival was 9.2 months (interquartile range 4.1-17.93).At multivariate analysis, RT dose, colorectal histology, systemic therapies were correlated with LC. Performance status and the presence of metastatic sites other than the thoracic nodes were correlated with OS. Local response was a predictor of OS.

    CONCLUSION:

    IG-HRT for thoracic nodes was safe and feasible. Higher RT doses were correlated to better LC and should be taken in consideration at least in patients with isolated nodal metastases and colorectal histology.

    ADVANCES IN KNOWLEDGE:

    Radiotherapy is safe and effective treatment for thoracic nodes metastases, higher radiotherapy doses are correlated to better LC. Oligometastatic patients can receive IG-HRT also for thoracic nodes metastases.

  7. f

    Median (Interquartile range) absolute percent biasa and mean squared error...

    • figshare.com
    • plos.figshare.com
    xls
    Updated Jun 2, 2023
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    Andrea Benedetti; Robert Platt; Juli Atherton (2023). Median (Interquartile range) absolute percent biasa and mean squared error σ2u as estimated via QUAD or PQL, overall and by data generation parameters. [Dataset]. http://doi.org/10.1371/journal.pone.0084601.t003
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    xlsAvailable download formats
    Dataset updated
    Jun 2, 2023
    Dataset provided by
    PLOS ONE
    Authors
    Andrea Benedetti; Robert Platt; Juli Atherton
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    a : Median absolute percent bias of σ2u was calculated for each simulation scenario, then summarized across scenarios.b : This is the number of simulation scenarios used to calculate the information.

  8. f

    Characteristics of BV from FAERS and JADER databases.

    • figshare.com
    • plos.figshare.com
    xls
    Updated May 16, 2025
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    Feilong Tan; Yanhua Li; Hongying Xia; Wenjie Yin (2025). Characteristics of BV from FAERS and JADER databases. [Dataset]. http://doi.org/10.1371/journal.pone.0322378.t003
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    xlsAvailable download formats
    Dataset updated
    May 16, 2025
    Dataset provided by
    PLOS ONE
    Authors
    Feilong Tan; Yanhua Li; Hongying Xia; Wenjie Yin
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Characteristics of BV from FAERS and JADER databases.

  9. Characteristics of the included medications.

    • plos.figshare.com
    xls
    Updated Jun 21, 2023
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    Benazir Hodzic-Santor; Chana A. Sacks; Tamara Van Bakel; Michael Fralick (2023). Characteristics of the included medications. [Dataset]. http://doi.org/10.1371/journal.pone.0281076.t001
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    xlsAvailable download formats
    Dataset updated
    Jun 21, 2023
    Dataset provided by
    PLOShttp://plos.org/
    Authors
    Benazir Hodzic-Santor; Chana A. Sacks; Tamara Van Bakel; Michael Fralick
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Characteristics of the included medications.

  10. f

    Summary of major algorithms used for signal detection.

    • figshare.com
    xls
    Updated May 16, 2025
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    Feilong Tan; Yanhua Li; Hongying Xia; Wenjie Yin (2025). Summary of major algorithms used for signal detection. [Dataset]. http://doi.org/10.1371/journal.pone.0322378.t002
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    xlsAvailable download formats
    Dataset updated
    May 16, 2025
    Dataset provided by
    PLOS ONE
    Authors
    Feilong Tan; Yanhua Li; Hongying Xia; Wenjie Yin
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Summary of major algorithms used for signal detection.

  11. f

    Raw data (ID PONE-D-24–42713).

    • plos.figshare.com
    zip
    Updated May 16, 2025
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    Feilong Tan; Yanhua Li; Hongying Xia; Wenjie Yin (2025). Raw data (ID PONE-D-24–42713). [Dataset]. http://doi.org/10.1371/journal.pone.0322378.s001
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    zipAvailable download formats
    Dataset updated
    May 16, 2025
    Dataset provided by
    PLOS ONE
    Authors
    Feilong Tan; Yanhua Li; Hongying Xia; Wenjie Yin
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    ObjectivesBrentuximab Vedotin (BV) is a novel antibody-drug conjugate (ADC) approved for the treatment of classical Hodgkin’s lymphoma and systemic anaplastic large cell lymphoma. However, as a relatively new therapeutic agent, the long-term safety profile and adverse event (AE) profile of BV require further investigation. This study aimed to identify significant and unexpected AEs associated with BV using data from the FDA Adverse Event Reporting System (FAERS) and the Japanese Adverse Drug Event Report (JADER) databases.MethodsData on BV-related AEs were extracted from the FAERS and JADER databases. Signal detection was performed using the reporting odds ratio (ROR) and 95% confidence intervals (95% CI). Risk signals were categorized according to system organ classes (SOCs) and preferred terms (PTs) as defined by the Medical Dictionary for Regulatory Activities (MedDRA) version 26.0. In addition, the onset times of BV-related AEs were analyzed.ResultsBetween 2004 and 2023, a total of 19,279 and 2,561 AEs related to BV were recorded in the FAERS and JADER databases, respectively. At the SOC level, prominent signals in the FAERS database included blood and lymphatic system disorders, benign, malignant, and unspecified neoplasms (including cysts and polyps), as well as congenital, familial, and genetic disorders. In the JADER database, the most notable signals involved benign, malignant, and unspecified neoplasms, blood and lymphatic system disorders, and nervous system disorders. At the PT level, the top five signals in the FAERS database were peripheral motor neuropathy, peripheral sensory neuropathy, pneumocystis jirovecii pneumonia, febrile bone marrow aplasia, and polyneuropathy. Unexpected AEs included febrile bone marrow aplasia and Guillain-Barré syndrome. In the JADER database, the top five signals included peripheral motor neuropathy, peripheral sensory neuropathy, bacterial gastroenteritis, febrile neutropenia and pneumonia, with unexpected AEs such as left ventricular dysfunction, cardiomegaly, retinal detachment, and marasmus. The median onset time of AEs was 22 days (interquartile range [IQR] 7–81 days) in FAERS and 27 days (IQR 7–73 days) in JADER.ConclusionThe signal detection results from the FAERS and JADER databases highlight the importance of monitoring significant and unexpected AEs associated with BV, particularly in the early stages of treatment. These findings contribute to enhancing the post-marketing safety profile of BV and offer valuable insights for clinical risk management strategies.

  12. f

    Data from: S1 Dataset -

    • plos.figshare.com
    xlsx
    Updated Feb 12, 2025
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    Lukundo Siame; Gift C. Chama; Sepiso K. Masenga (2025). S1 Dataset - [Dataset]. http://doi.org/10.1371/journal.pone.0312570.s002
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    xlsxAvailable download formats
    Dataset updated
    Feb 12, 2025
    Dataset provided by
    PLOS ONE
    Authors
    Lukundo Siame; Gift C. Chama; Sepiso K. Masenga
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    BackgroundTuberculosis (TB) remains a significant public health challenge, particularly among vulnerable populations like children. This is especially true in Sub-Saharan Africa, where the burden of TB in children is substantial. Zambia ranks 21st among the top 30 high TB endemic countries globally. While studies have explored TB in adults in Zambia, the prevalence and associated factors in children are not well documented. This study aimed to determine the prevalence and sociodemographic, and clinical factors associated with active TB disease in hospitalized children under the age of 15 years at Livingstone University Teaching Hospital (LUTH), the largest referral center in Zambia’s Southern Province.MethodsThis retrospective cross-sectional study of 700 pediatric patients under 15 years old, utilized programmatic data from the Pediatrics Department at LUTH. A systematic sampling method was used to select participants from medical records. Data on demographics, medical conditions, anthropometric measurements, and blood tests were collected. Data analysis included descriptive statistics, chi-square tests, and multivariable logistic regression to identify factors associated with TB.ResultsThe median age was 24 months (interquartile range (IQR): 11, 60) and majority were male (56.7%, n = 397/700). Most participants were from urban areas (59.9%, n = 419/700), and 9.2% (n = 62/675) were living with HIV. Malnutrition and comorbidities were present in a significant portion of the participants (19.0% and 25.1%, respectively). The prevalence of active TB cases was 9.4% (n = 66/700) among hospitalized children. Persons living with HIV (Adjusted odds ratio (AOR) of 6.30; 95% confidence interval (CI) of 2.85, 13.89, p< 0.001), and those who were malnourished (AOR: 10.38, 95% CI: 4.78, 22.55, p< 0.001) had a significantly higher likelihood of developing active TB disease.ConclusionThis study revealed a prevalence 9.4% active TB among hospitalized children under 15 years at LUTH. HIV status and malnutrition emerged as significant factors associated with active TB disease. These findings emphasize the need for pediatric TB control strategies that prioritize addressing associated factors to effectively reduce the burden of tuberculosis in Zambian children.

  13. f

    Data from: S1 Dataset -

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    bin
    Updated Aug 7, 2023
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    Winnie Kibone; Felix Bongomin; Jerom Okot; Angel Lisa Nansubuga; Lincoln Abraham Tentena; Edbert Bagasha Nuwamanya; Titus Winyi; Whitney Balirwa; Sarah Kiguli; Joseph Baruch Baluku; Anthony Makhoba; Mark Kaddumukasa (2023). S1 Dataset - [Dataset]. http://doi.org/10.1371/journal.pone.0289546.s001
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    Dataset updated
    Aug 7, 2023
    Dataset provided by
    PLOS ONE
    Authors
    Winnie Kibone; Felix Bongomin; Jerom Okot; Angel Lisa Nansubuga; Lincoln Abraham Tentena; Edbert Bagasha Nuwamanya; Titus Winyi; Whitney Balirwa; Sarah Kiguli; Joseph Baruch Baluku; Anthony Makhoba; Mark Kaddumukasa
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    BackgroundRheumatic and musculoskeletal disorders (RMDs) are associated with cardiovascular diseases (CVDs), with hypertension being the most common. We aimed to determine the prevalence of high blood pressure (HBP), awareness, treatment, and blood pressure control among patients with RMDs seen in a Rheumatology clinic in Uganda.MethodsWe conducted a cross-sectional study at the Rheumatology Clinic of Mulago National Referral Hospital (MNRH), Kampala, Uganda. Socio-demographic, clinical characteristics and anthropometric data were collected. Multivariable logistic regression was performed using STATA 16 to determine factors associated with HBP in patients with RMDs.ResultsA total of 100 participants were enrolled. Of these, majority were female (84%, n = 84) with mean age of 52.1 (standard deviation: 13.8) years and median body mass index of 28 kg/m2 (interquartile range (IQR): 24.8 kg/m2–32.9 kg/m2). The prevalence of HBP was 61% (n = 61, 95% CI: 51.5–70.5), with the majority (77%, n = 47, 95% CI: 66.5–87.6) being aware they had HTN. The prevalence of HTN was 47% (n = 47, 37.2–56.8), and none had it under control. Factors independently associated with HBP were age 46-55years (adjusted prevalence ratio (aPR): 2.5, 95% confidence interval (CI): 1.06–5.95), 56–65 years (aPR: 2.6, 95% CI: 1.09–6.15), >65 years (aPR: 2.5, 95% CI: 1.02–6.00), obesity (aPR: 3.7, 95% CI: 1.79–7.52), overweight (aPR: 2.7, 95% CI: 1.29–5.77).ConclusionThere was a high burden of HBP among people with RMDs in Uganda with poor blood pressure control, associated with high BMI and increasing age. There is a need for further assessment of the RMD specific drivers of HBP and meticulous follow up of patients with RMDs.

  14. f

    Economic Evaluation of Interventions for Prevention of Hospital Acquired...

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    Updated Jun 2, 2023
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    Habibollah Arefian; Monique Vogel; Anja Kwetkat; Michael Hartmann (2023). Economic Evaluation of Interventions for Prevention of Hospital Acquired Infections: A Systematic Review [Dataset]. http://doi.org/10.1371/journal.pone.0146381
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    pdfAvailable download formats
    Dataset updated
    Jun 2, 2023
    Dataset provided by
    PLOS ONE
    Authors
    Habibollah Arefian; Monique Vogel; Anja Kwetkat; Michael Hartmann
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    ObjectiveThis systematic review sought to assess the costs and benefits of interventions preventing hospital-acquired infections and to evaluate methodological and reporting quality.MethodsWe systematically searched Medline via PubMed and the National Health Service Economic Evaluation Database from 2009 to 2014. We included quasi-experimental and randomized trails published in English or German evaluating the economic impact of interventions preventing the four most frequent hospital-acquired infections (urinary tract infections, surgical wound infections, pneumonia, and primary bloodstream infections). Characteristics and results of the included articles were extracted using a standardized data collection form. Study and reporting quality were evaluated using SIGN and CHEERS checklists. All costs were adjusted to 2013 US$. Savings-to-cost ratios and difference values with interquartile ranges (IQRs) per month were calculated, and the effects of study characteristics on the cost-benefit results were analyzed.ResultsOur search returned 2067 articles, of which 27 met the inclusion criteria. The median savings-to-cost ratio across all studies reporting both costs and savings values was US $7.0 (IQR 4.2–30.9), and the median net global saving was US $13,179 (IQR 5,106–65,850) per month. The studies’ reporting quality was low. Only 14 articles reported more than half of CHEERS items appropriately. Similarly, an assessment of methodological quality found that only four studies (14.8%) were considered high quality.ConclusionsPrevention programs for hospital acquired infections have very positive cost-benefit ratios. Improved reporting quality in health economics publications is required.

  15. Distribution of individual studies by outcome, randomization and blinding.

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    xls
    Updated Jun 13, 2023
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    Joel Lexchin (2023). Distribution of individual studies by outcome, randomization and blinding. [Dataset]. http://doi.org/10.1371/journal.pone.0276672.t002
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    xlsAvailable download formats
    Dataset updated
    Jun 13, 2023
    Dataset provided by
    PLOShttp://plos.org/
    Authors
    Joel Lexchin
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Distribution of individual studies by outcome, randomization and blinding.

  16. f

    Displays the descriptive statistics, including the minimum, maximum, median...

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    xls
    Updated May 23, 2024
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    Muath Saad Alassaf; Hatem Hazzaa Hamadallah; Abdulrahman Almuzaini; Aseel M. Aloufi; Khalid N. Al-Turki; Ahmed S. Khoshhal; Mahmoud A. Alsulaimani; Rawah Eshky (2024). Displays the descriptive statistics, including the minimum, maximum, median and interquartile range (IQR) values, for the variables analyzed. [Dataset]. http://doi.org/10.1371/journal.pone.0303308.t004
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    xlsAvailable download formats
    Dataset updated
    May 23, 2024
    Dataset provided by
    PLOS ONE
    Authors
    Muath Saad Alassaf; Hatem Hazzaa Hamadallah; Abdulrahman Almuzaini; Aseel M. Aloufi; Khalid N. Al-Turki; Ahmed S. Khoshhal; Mahmoud A. Alsulaimani; Rawah Eshky
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Displays the descriptive statistics, including the minimum, maximum, median and interquartile range (IQR) values, for the variables analyzed.

  17. f

    Percent of BIC patients by TBSA.

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    xls
    Updated Feb 23, 2024
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    Kendall Wermine; Juquan Song; Sunny Gotewal; Lyndon Huang; Kassandra Corona; Shelby Bagby; Elvia Villarreal; Shivan Chokshi; Tsola Efejuku; Jasmine Chaij; Alejandro Joglar; Nicholas J. Iglesias; Phillip Keys; Giovanna De La Tejera; Georgiy Golovko; Amina El Ayadi; Steven E. Wolf (2024). Percent of BIC patients by TBSA. [Dataset]. http://doi.org/10.1371/journal.pone.0278658.t001
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    xlsAvailable download formats
    Dataset updated
    Feb 23, 2024
    Dataset provided by
    PLOS ONE
    Authors
    Kendall Wermine; Juquan Song; Sunny Gotewal; Lyndon Huang; Kassandra Corona; Shelby Bagby; Elvia Villarreal; Shivan Chokshi; Tsola Efejuku; Jasmine Chaij; Alejandro Joglar; Nicholas J. Iglesias; Phillip Keys; Giovanna De La Tejera; Georgiy Golovko; Amina El Ayadi; Steven E. Wolf
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Studies conflict on the significance of burn-induced coagulopathy. We posit that burn-induced coagulopathy is associated with injury severity in burns. Our purpose was to characterize coagulopathy profiles in burns and determine relationships between % total burn surface area (TBSA) burned and coagulopathy using the International Normalized Ratio (INR). Burned patients with INR values were identified in the TriNetX database and analyzed by %TBSA burned. Patients with history of transfusions, chronic hepatic failure, and those on anticoagulant medications were excluded. Interquartile ranges for INR in the burned study population were 1.2 (1.0–1.4). An INR of ≥ 1.5 was used to represent those with burn-induced coagulopathy as it fell outside the 3rd quartile. The population was stratified into subgroups using INR levels

  18. f

    Data from: S1 Dataset -

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    xls
    Updated Aug 29, 2024
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    Dumisani Mfipa; Precious L. Hajison; Felistas Mpachika-Mfipa (2024). S1 Dataset - [Dataset]. http://doi.org/10.1371/journal.pone.0291585.s001
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    Dataset updated
    Aug 29, 2024
    Dataset provided by
    PLOS ONE
    Authors
    Dumisani Mfipa; Precious L. Hajison; Felistas Mpachika-Mfipa
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    BackgroundBirthweight has an impact on newborn’s future health outcomes. Maternal factors, including age, delivery mode, HIV status, gestational age, parity and obstetric complications (preeclampsia or eclampsia [PE], antepartum hemorrhage [APH] and sepsis), however, have been shown as risk factors of low birthweight (LBW) elsewhere. For data-guided interventions, we aimed to identify predictors of LBW and compare newborn birthweights between different groups of maternal factors at Rev. John Chilembwe Hospital in Phalombe district, Malawi.MethodsUsing a retrospective record review study design, we extracted data from maternity registers of 1244 women and their newborns from October, 2022 to March, 2023. Data were skewed. Median test was used to compare median birthweights. Chi-square or Fisher’s exact tests were used to compare proportions of LBW among different groups of maternal factors. Multivariable logistic regression with stepwise, forward likelihood method was performed to identify predictors of LBW.ResultsMedian birthweight was 2900.00g (interquartile range [IQR]: 2600.00g to 3200.00g). Prevalence of LBW was 16.7% (n = 208). Proportions of LBW infants were higher in women with PE, APH, including women with sepsis than controls (10 [47.6%] of 21 vs 7 [58.3%] of 12 vs 191 [15.8%] of 1211, p < .001). Lower in term and postterm than preterm (46 [5.5%] of 835 vs 2 [3.7%] of 54 vs 160 [45.1%] of 355, p < .001). The odds of LBW infants were higher in preterm than term (AOR = 13.76, 95%CI: 9.54 to 19.84, p < .001), women with PE (AOR = 3.88, 95%CI: 1.35 to 11.18, p = .012), APH, including women with sepsis (AOR = 6.25, 95%CI: 1.50 to 26.11, p = .012) than controls.ConclusionPrevalence of LBW was high. Its predictors were prematurity, PE, APH and sepsis. Interventions aimed to prevent these risk factors should be prioritized to improve birthweight outcomes.

  19. The characteristics of each group by group-based trajectory modeling.

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    xls
    Updated Oct 22, 2024
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    Hisashi Itoshima; Jung-ho Shin; Noriko Sasaki; Etsu Goto; Susumu Kunisawa; Yuichi Imanaka (2024). The characteristics of each group by group-based trajectory modeling. [Dataset]. http://doi.org/10.1371/journal.pone.0312248.t001
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    xlsAvailable download formats
    Dataset updated
    Oct 22, 2024
    Dataset provided by
    PLOShttp://plos.org/
    Authors
    Hisashi Itoshima; Jung-ho Shin; Noriko Sasaki; Etsu Goto; Susumu Kunisawa; Yuichi Imanaka
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    The characteristics of each group by group-based trajectory modeling.

  20. f

    The survey dataset for participants’ responses.

    • plos.figshare.com
    bin
    Updated Jun 5, 2025
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    Anan S. Jarab; Walid A. Al-Qerem; Salam Alqudah; Karem H. Alzoubi; Shrouq R. Abu Heshmeh; Yazid N. Al Hamarneh; Eman Alefishat; Yousef Mimi; Maher Khdour (2025). The survey dataset for participants’ responses. [Dataset]. http://doi.org/10.1371/journal.pone.0324846.s002
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    binAvailable download formats
    Dataset updated
    Jun 5, 2025
    Dataset provided by
    PLOS ONE
    Authors
    Anan S. Jarab; Walid A. Al-Qerem; Salam Alqudah; Karem H. Alzoubi; Shrouq R. Abu Heshmeh; Yazid N. Al Hamarneh; Eman Alefishat; Yousef Mimi; Maher Khdour
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    BackgroundDiabetes significantly contributes to both microvascular and macrovascular complications. Effective management depends on meticulous glycemic control, with insulin playing a crucial role. The success of insulin therapy relies on patients’ ability to properly administer insulin and adhere to the administration instructions.ObjectiveThis cross-sectional study aimed to evaluate the knowledge and practices of insulin use among patients with type 1 and type 2 diabetes and to identify factors influencing these practices.MethodsA validated, self-administered questionnaire was distributed in person to outpatient insulin users with type 1 and type 2 diabetes at King Abdullah University Hospital. In addition to socio-demographics and health characteristics, the questionnaire evaluated patients’ knowledge regarding insulin, its administration, and insulin use practices. Quantile regression was used to explore factors associated with insulin administration practices.ResultsThe study included 402 patients, 53.0% of which are females, with a median age of 54 years. The median (interquartile range) knowledge score was 5 (4–6) out of a maximum possible score of 9, while the median (interquartile range) insulin administration practice score was 80.39 (72.92–85.42) out of a maximum possible score of 100. = . Lower practice levels were associated with older age (coefficient: −0.149, 95%CI: −0.217- −0.082), lack of diabetes information (coefficient: −6.189, 95%CI: −12.041 - −0.337), and reliance on non-scientific information sources (coefficient: −2.409, 95%CI: −4.562 - −0.255). However, higher knowledge scores were associated with better practices (coefficient: 2.516, 95%CI: 1.819–3.213).ConclusionsWhile the study reveals acceptable knowledge and practices regarding insulin self-administration, it also highlights significant gaps that policy initiatives should address by implementing uniform training programs and interventions to promote effective insulin administration practices.

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U.S. EPA Office of Research and Development (ORD) (2020). Simulation Data Set [Dataset]. https://catalog.data.gov/dataset/simulation-data-set
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Simulation Data Set

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Dataset updated
Nov 12, 2020
Dataset provided by
United States Environmental Protection Agencyhttp://www.epa.gov/
Description

These are simulated data without any identifying information or informative birth-level covariates. We also standardize the pollution exposures on each week by subtracting off the median exposure amount on a given week and dividing by the interquartile range (IQR) (as in the actual application to the true NC birth records data). The dataset that we provide includes weekly average pregnancy exposures that have already been standardized in this way while the medians and IQRs are not given. This further protects identifiability of the spatial locations used in the analysis. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: File format: R workspace file; “Simulated_Dataset.RData”. Metadata (including data dictionary) • y: Vector of binary responses (1: adverse outcome, 0: control) • x: Matrix of covariates; one row for each simulated individual • z: Matrix of standardized pollution exposures • n: Number of simulated individuals • m: Number of exposure time periods (e.g., weeks of pregnancy) • p: Number of columns in the covariate design matrix • alpha_true: Vector of “true” critical window locations/magnitudes (i.e., the ground truth that we want to estimate) Code Abstract We provide R statistical software code (“CWVS_LMC.txt”) to fit the linear model of coregionalization (LMC) version of the Critical Window Variable Selection (CWVS) method developed in the manuscript. We also provide R code (“Results_Summary.txt”) to summarize/plot the estimated critical windows and posterior marginal inclusion probabilities. Description “CWVS_LMC.txt”: This code is delivered to the user in the form of a .txt file that contains R statistical software code. Once the “Simulated_Dataset.RData” workspace has been loaded into R, the text in the file can be used to identify/estimate critical windows of susceptibility and posterior marginal inclusion probabilities. “Results_Summary.txt”: This code is also delivered to the user in the form of a .txt file that contains R statistical software code. Once the “CWVS_LMC.txt” code is applied to the simulated dataset and the program has completed, this code can be used to summarize and plot the identified/estimated critical windows and posterior marginal inclusion probabilities (similar to the plots shown in the manuscript). Optional Information (complete as necessary) Required R packages: • For running “CWVS_LMC.txt”: • msm: Sampling from the truncated normal distribution • mnormt: Sampling from the multivariate normal distribution • BayesLogit: Sampling from the Polya-Gamma distribution • For running “Results_Summary.txt”: • plotrix: Plotting the posterior means and credible intervals Instructions for Use Reproducibility (Mandatory) What can be reproduced: The data and code can be used to identify/estimate critical windows from one of the actual simulated datasets generated under setting E4 from the presented simulation study. How to use the information: • Load the “Simulated_Dataset.RData” workspace • Run the code contained in “CWVS_LMC.txt” • Once the “CWVS_LMC.txt” code is complete, run “Results_Summary.txt”. Format: Below is the replication procedure for the attached data set for the portion of the analyses using a simulated data set: Data The data used in the application section of the manuscript consist of geocoded birth records from the North Carolina State Center for Health Statistics, 2005-2008. In the simulation study section of the manuscript, we simulate synthetic data that closely match some of the key features of the birth certificate data while maintaining confidentiality of any actual pregnant women. Availability Due to the highly sensitive and identifying information contained in the birth certificate data (including latitude/longitude and address of residence at delivery), we are unable to make the data from the application section publically available. However, we will make one of the simulated datasets available for any reader interested in applying the method to realistic simulated birth records data. This will also allow the user to become familiar with the required inputs of the model, how the data should be structured, and what type of output is obtained. While we cannot provide the application data here, access to the North Carolina birth records can be requested through the North Carolina State Center for Health Statistics, and requires an appropriate data use agreement. Description Permissions: These are simulated data without any identifying information or informative birth-level covariates. We also standardize the pollution exposures on each week by subtracting off the median exposure amount on a given week and dividing by the interquartile range (IQR) (as in the actual application to the true NC birth records data). The dataset that we provide includes weekly average pregnancy exposures that have already been standardized in this way while the medians and IQRs are not given. This further protects identifiability of the spatial locations used in the analysis. This dataset is associated with the following publication: Warren, J., W. Kong, T. Luben, and H. Chang. Critical Window Variable Selection: Estimating the Impact of Air Pollution on Very Preterm Birth. Biostatistics. Oxford University Press, OXFORD, UK, 1-30, (2019).

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