3 datasets found
  1. r

    MATLAB code and output files for integral, mean and covariance of the...

    • researchdata.edu.au
    Updated 2022
    + more versions
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    Adams Matthew (2022). MATLAB code and output files for integral, mean and covariance of the simplex-truncated multivariate normal distribution [Dataset]. http://doi.org/10.25912/RDF_1660176734022
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    Dataset updated
    2022
    Dataset provided by
    Queensland University of Technology
    Authors
    Adams Matthew
    License

    Attribution 3.0 (CC BY 3.0)https://creativecommons.org/licenses/by/3.0/
    License information was derived automatically

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Mar 14, 2022 - Jul 22, 2022
    Description

    Compositional data, which is data consisting of fractions or probabilities, is common in many fields including ecology, economics, physical science and political science. If these data would otherwise be normally distributed, their spread can be conveniently represented by a multivariate normal distribution truncated to the non-negative space under a unit simplex. Here this distribution is called the simplex-truncated multivariate normal distribution. For calculations on truncated distributions, it is often useful to obtain rapid estimates of their integral, mean and covariance; these quantities characterising the truncated distribution will generally possess different values to the corresponding non-truncated distribution.

    In the paper "Adams, Matthew (2022) Integral, mean and covariance of the simplex-truncated multivariate normal distribution. PLoS One, 17(7), Article number: e0272014. ", three different approaches that can estimate the integral, mean and covariance of any simplex-truncated multivariate normal distribution are described and compared. These three approaches are (1) naive rejection sampling, (2) a method described by Gessner et al. that unifies subset simulation and the Holmes-Diaconis-Ross algorithm with an analytical version of elliptical slice sampling, and (3) a semi-analytical method that expresses the integral, mean and covariance in terms of integrals of hyperrectangularly-truncated multivariate normal distributions, the latter of which are readily computed in modern mathematical and statistical packages. Strong agreement is demonstrated between all three approaches, but the most computationally efficient approach depends strongly both on implementation details and the dimension of the simplex-truncated multivariate normal distribution.

    This dataset consists of all code and results for the associated article.

  2. f

    Dataset for 3rd variation of SEIRSEI model.

    • plos.figshare.com
    • datasetcatalog.nlm.nih.gov
    xls
    Updated Apr 18, 2024
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    Kottakkaran Sooppy Nisar; Muhammad Wajahat Anjum; Muhammad Asif Zahoor Raja; Muhammad Shoaib (2024). Dataset for 3rd variation of SEIRSEI model. [Dataset]. http://doi.org/10.1371/journal.pone.0298451.t001
    Explore at:
    xlsAvailable download formats
    Dataset updated
    Apr 18, 2024
    Dataset provided by
    PLOS ONE
    Authors
    Kottakkaran Sooppy Nisar; Muhammad Wajahat Anjum; Muhammad Asif Zahoor Raja; Muhammad Shoaib
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    The paper presents an innovative computational framework for predictive solutions for simulating the spread of malaria. The structure incorporates sophisticated computing methods to improve the reliability of predicting malaria outbreaks. The study strives to provide a strong and effective tool for forecasting the propagation of malaria via the use of an AI-based recurrent neural network (RNN). The model is classified into two groups, consisting of humans and mosquitoes. To develop the model, the traditional Ross-Macdonald model is expanded upon, allowing for a more comprehensive analysis of the intricate dynamics at play. To gain a deeper understanding of the extended Ross model, we employ RNN, treating it as an initial value problem involving a system of first-order ordinary differential equations, each representing one of the seven profiles. This method enables us to obtain valuable insights and elucidate the complexities inherent in the propagation of malaria. Mosquitoes and humans constitute the two cohorts encompassed within the exposition of the mathematical dynamical model. Human dynamics are comprised of individuals who are susceptible, exposed, infectious, and in recovery. The mosquito population, on the other hand, is divided into three categories: susceptible, exposed, and infected. For RNN, we used the input of 0 to 300 days with an interval length of 3 days. The evaluation of the precision and accuracy of the methodology is conducted by superimposing the estimated solution onto the numerical solution. In addition, the outcomes obtained from the RNN are examined, including regression analysis, assessment of error autocorrelation, examination of time series response plots, mean square error, error histogram, and absolute error. A reduced mean square error signifies that the model’s estimates are more accurate. The result is consistent with acquiring an approximate absolute error close to zero, revealing the efficacy of the suggested strategy. This research presents a novel approach to solving the malaria propagation model using recurrent neural networks. Additionally, it examines the behavior of various profiles under varying initial conditions of the malaria propagation model, which consists of a system of ordinary differential equations.

  3. f

    RNN statistical results.

    • plos.figshare.com
    xls
    Updated Apr 18, 2024
    + more versions
    Share
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    Click to copy link
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    Kottakkaran Sooppy Nisar; Muhammad Wajahat Anjum; Muhammad Asif Zahoor Raja; Muhammad Shoaib (2024). RNN statistical results. [Dataset]. http://doi.org/10.1371/journal.pone.0298451.t004
    Explore at:
    xlsAvailable download formats
    Dataset updated
    Apr 18, 2024
    Dataset provided by
    PLOS ONE
    Authors
    Kottakkaran Sooppy Nisar; Muhammad Wajahat Anjum; Muhammad Asif Zahoor Raja; Muhammad Shoaib
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    The paper presents an innovative computational framework for predictive solutions for simulating the spread of malaria. The structure incorporates sophisticated computing methods to improve the reliability of predicting malaria outbreaks. The study strives to provide a strong and effective tool for forecasting the propagation of malaria via the use of an AI-based recurrent neural network (RNN). The model is classified into two groups, consisting of humans and mosquitoes. To develop the model, the traditional Ross-Macdonald model is expanded upon, allowing for a more comprehensive analysis of the intricate dynamics at play. To gain a deeper understanding of the extended Ross model, we employ RNN, treating it as an initial value problem involving a system of first-order ordinary differential equations, each representing one of the seven profiles. This method enables us to obtain valuable insights and elucidate the complexities inherent in the propagation of malaria. Mosquitoes and humans constitute the two cohorts encompassed within the exposition of the mathematical dynamical model. Human dynamics are comprised of individuals who are susceptible, exposed, infectious, and in recovery. The mosquito population, on the other hand, is divided into three categories: susceptible, exposed, and infected. For RNN, we used the input of 0 to 300 days with an interval length of 3 days. The evaluation of the precision and accuracy of the methodology is conducted by superimposing the estimated solution onto the numerical solution. In addition, the outcomes obtained from the RNN are examined, including regression analysis, assessment of error autocorrelation, examination of time series response plots, mean square error, error histogram, and absolute error. A reduced mean square error signifies that the model’s estimates are more accurate. The result is consistent with acquiring an approximate absolute error close to zero, revealing the efficacy of the suggested strategy. This research presents a novel approach to solving the malaria propagation model using recurrent neural networks. Additionally, it examines the behavior of various profiles under varying initial conditions of the malaria propagation model, which consists of a system of ordinary differential equations.

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Share
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Click to copy link
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Close
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Adams Matthew (2022). MATLAB code and output files for integral, mean and covariance of the simplex-truncated multivariate normal distribution [Dataset]. http://doi.org/10.25912/RDF_1660176734022

MATLAB code and output files for integral, mean and covariance of the simplex-truncated multivariate normal distribution

Explore at:
Dataset updated
2022
Dataset provided by
Queensland University of Technology
Authors
Adams Matthew
License

Attribution 3.0 (CC BY 3.0)https://creativecommons.org/licenses/by/3.0/
License information was derived automatically

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Time period covered
Mar 14, 2022 - Jul 22, 2022
Description

Compositional data, which is data consisting of fractions or probabilities, is common in many fields including ecology, economics, physical science and political science. If these data would otherwise be normally distributed, their spread can be conveniently represented by a multivariate normal distribution truncated to the non-negative space under a unit simplex. Here this distribution is called the simplex-truncated multivariate normal distribution. For calculations on truncated distributions, it is often useful to obtain rapid estimates of their integral, mean and covariance; these quantities characterising the truncated distribution will generally possess different values to the corresponding non-truncated distribution.

In the paper "Adams, Matthew (2022) Integral, mean and covariance of the simplex-truncated multivariate normal distribution. PLoS One, 17(7), Article number: e0272014. ", three different approaches that can estimate the integral, mean and covariance of any simplex-truncated multivariate normal distribution are described and compared. These three approaches are (1) naive rejection sampling, (2) a method described by Gessner et al. that unifies subset simulation and the Holmes-Diaconis-Ross algorithm with an analytical version of elliptical slice sampling, and (3) a semi-analytical method that expresses the integral, mean and covariance in terms of integrals of hyperrectangularly-truncated multivariate normal distributions, the latter of which are readily computed in modern mathematical and statistical packages. Strong agreement is demonstrated between all three approaches, but the most computationally efficient approach depends strongly both on implementation details and the dimension of the simplex-truncated multivariate normal distribution.

This dataset consists of all code and results for the associated article.

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