Additional file 2: of IMP: a pipeline for reproducible...
- figshare.com
- springernature.figshare.com
xlsxUpdated May 30, 2023
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EmailClick to copy linkLink copiedCiteShaman Narayanasamy; Yohan Jarosz; Emilie Muller; Anna Heintz-Buschart; Malte Herold; Anne Kaysen; CÊdric Laczny; Nicolås Pinel; Patrick May; Paul Wilmes (2023). Additional file 2: of IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses [Dataset]. http://doi.org/10.6084/m9.figshare.c.3647516_D2.v1xlsxAvailable download formatsUnique identifierhttps://doi.org/10.6084/m9.figshare.c.3647516_D2.v1Dataset updatedMay 30, 2023Dataset provided byfigshareAuthorsShaman Narayanasamy; Yohan Jarosz; Emilie Muller; Anna Heintz-Buschart; Malte Herold; Anne Kaysen; CÊdric Laczny; Nicolås Pinel; Patrick May; Paul WilmesLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescriptionSupplementary tables. Tables S1–S12. Detailed table legends available within file. (XLSX 4350 kb)
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MIntO: a Modular and Scalable Pipeline for Microbiome Metagenomic and...
- data.niaid.nih.gov
- zenodo.org
Updated Mar 17, 2022ShareFacebookTwitterEmailClick to copy linkLink copiedCiteEleonora Nigro (2022). MIntO: a Modular and Scalable Pipeline for Microbiome Metagenomic and Metatranscriptomic Meta-omics Data Integration [Dataset]. https://data.niaid.nih.gov/resources?id=ZENODO_6360083Dataset updatedMar 17, 2022Dataset provided byCarmen Saenz
Manimozhiyan Arumugam
Vithiagaran Gunalan
Eleonora NigroLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescriptionTo illustrate the use of MIntO, a set of 91 human fecal metagenomes from the Inflammatory Bowel Disease Multi’omics Database was selected (IBDMDB). We selected six participants diagnosed as non-IBD (P6018 (nIBD1), M2072 (nIBD2)); Crohn’s disease (H4006 (CD1) and H4020 (CD2)); and ulcerative colitis (H4019 (UC1) and H4035 (UC2)) that were followed for one year each.
Here, we present the results from the genome-based assembly-dependent mode, where we used 91 metagenomic high-quality reads to recover 163 high-quality MAGs, which constituted a set of non-redundant genomes.
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FacebookTwitterEmailAdditional file 2: of IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
Supplementary tables. Tables S1–S12. Detailed table legends available within file. (XLSX 4350 kb)