3 datasets found
  1. Conservation genomics of the Kuranda Treefrog (Litoria myola) - Filtered SNP...

    • figshare.com
    txt
    Updated Nov 30, 2022
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    Lorenzo Bertola; Megan Higgie; Kyall R Zenger; Conrad Hoskin (2022). Conservation genomics of the Kuranda Treefrog (Litoria myola) - Filtered SNP data [Dataset]. http://doi.org/10.6084/m9.figshare.20493423.v3
    Explore at:
    txtAvailable download formats
    Dataset updated
    Nov 30, 2022
    Dataset provided by
    figshare
    Authors
    Lorenzo Bertola; Megan Higgie; Kyall R Zenger; Conrad Hoskin
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Area covered
    Kuranda
    Description

    This dataset contains the filtered neutral SNP data (n=7132, genepop format) produced with DArTseq at Diversity Arrays Technology, Canberra.

    Adult individuals were sampled throughout the species range between 2000 and 2016, with two main sampling events (2001-2004; 2007-2009).

    The library preparation consisted of a dougle digest restriction with PstI and SphI. Fragments were amplified with 30 rounds of PCR. No size selection was conducted. Equimolar amounts of the individual libraries were pooled and sequenced on an Illumina HiSeq 2500 (77-bp single end). The resulting raw data was genotyped with DArT's KDCompute, and then filtered in R and excel for Call Rate (< 0.9), MAF (< 0.02), Reproducibility (

  2. r

    Australian Nucleotide (DNA/RNA) and Protein sequences from Australian...

    • researchdata.edu.au
    Updated Jul 23, 2012
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    QFAB Bioinformatics (2012). Australian Nucleotide (DNA/RNA) and Protein sequences from Australian organisms in the species Syzygium kuranda [Dataset]. https://researchdata.edu.au/australian-nucleotide-dnarna-syzygium-kuranda/78975
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    Dataset updated
    Jul 23, 2012
    Dataset provided by
    QFAB
    Authors
    QFAB Bioinformatics
    Area covered
    Australia
    Description

    This data collection contains all currently published nucleotide (DNA/RNA) and protein sequences from Australian Syzygium kuranda, commonly known as Cherry Penda. Other information about this group:

    The nucleotide (DNA/RNA) and protein sequences have been sourced through the European Nucleotide Archive (ENA) and Universal Protein Resource (UniProt), databases that contains comprehensive sets of nucleotide (DNA/RNA) and protein sequences from all organisms that have been published by the International Research Community.

    The identification of species in Syzygium kuranda as Australian dwelling organisms has been achieved by accessing the Australian Plant Census (APC) or Australian Faunal Directory (AFD) through the Atlas of Living Australia.

  3. r

    Australian Nucleotide (DNA/RNA) and Protein sequences from Australian...

    • researchdata.edu.au
    Updated Jul 23, 2012
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    QFAB Bioinformatics (2012). Australian Nucleotide (DNA/RNA) and Protein sequences from Australian organisms in the species Passiflora kuranda () [Dataset]. https://researchdata.edu.au/australian-nucleotide-dnarna-passiflora-kuranda/54123
    Explore at:
    Dataset updated
    Jul 23, 2012
    Dataset provided by
    QFAB
    Authors
    QFAB Bioinformatics
    Area covered
    Australia
    Description

    This data collection contains all currently published nucleotide (DNA/RNA) and protein sequences from Australian Passiflora kuranda. Other information about this group:

    The nucleotide (DNA/RNA) and protein sequences have been sourced through the European Nucleotide Archive (ENA) and Universal Protein Resource (UniProt), databases that contains comprehensive sets of nucleotide (DNA/RNA) and protein sequences from all organisms that have been published by the International Research Community.

    The identification of species in Passiflora kuranda as Australian dwelling organisms has been achieved by accessing the Australian Plant Census (APC) or Australian Faunal Directory (AFD) through the Atlas of Living Australia.

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Share
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Email
Click to copy link
Link copied
Close
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Lorenzo Bertola; Megan Higgie; Kyall R Zenger; Conrad Hoskin (2022). Conservation genomics of the Kuranda Treefrog (Litoria myola) - Filtered SNP data [Dataset]. http://doi.org/10.6084/m9.figshare.20493423.v3
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Conservation genomics of the Kuranda Treefrog (Litoria myola) - Filtered SNP data

Explore at:
txtAvailable download formats
Dataset updated
Nov 30, 2022
Dataset provided by
figshare
Authors
Lorenzo Bertola; Megan Higgie; Kyall R Zenger; Conrad Hoskin
License

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Area covered
Kuranda
Description

This dataset contains the filtered neutral SNP data (n=7132, genepop format) produced with DArTseq at Diversity Arrays Technology, Canberra.

Adult individuals were sampled throughout the species range between 2000 and 2016, with two main sampling events (2001-2004; 2007-2009).

The library preparation consisted of a dougle digest restriction with PstI and SphI. Fragments were amplified with 30 rounds of PCR. No size selection was conducted. Equimolar amounts of the individual libraries were pooled and sequenced on an Illumina HiSeq 2500 (77-bp single end). The resulting raw data was genotyped with DArT's KDCompute, and then filtered in R and excel for Call Rate (< 0.9), MAF (< 0.02), Reproducibility (

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