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aAbbreviation of cellular role categories of theoretical (http://www.ncbi.nlm.gov/COG/).bAbbreviation of cellular location. Protein cellular location was annotated by PSORTb V. 2.0 (http://www.psort.org/). C: Cytoplasmic, P: Periplasmic, U: Unknown, OM: OuterMembrane, CM: CytoplasmicMembrane.cProteins upshifted in the BMΔvirB mutant are marked with “+”, and those downshifted with “−”; unique protein spots in BM are marked with “Y”, and in BMΔvirB with “T”.
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Twitter(a)SNP no corresponds to numbers in row 2 of Supplementary table S4: Annotation of SNPs. More information about the SNP can be found in this table.(b)Subcellular localization was predicted for proteins were no localization was determined experimentally using PSORTb vs 3.0 (http://www.psort.org/psortb/). Cyt: cytoplasm, im: inner membrane, per: periplasm, om: outer membrane, es: extracellular space, uk: unknown, -: not determined.(c)Information of regulation by bvg was retrieved from Cummings et al. [56], Streefland et al. [78] and de Gouw et al. in preparation. Act: bvg-activated, rep: bvg-repressed.(d)Information about domains, active sites and conserved positions was derived from SMART (http://smart.embl-heidelberg.de) and Conserved Domain Database (http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml).
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TwitterPSORT II Computer prediction of putative NLSs in mouse NBEA.
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aSignal peptides and signal peptide type of each protein were predicted with software SignalP 4.0 or LipoP 1.0, which are available online (http://www.cbs.dtu.dk/services/SignalP-4.0 and http://www.cbs.dtu.dk/services/LipoP-1.0. Accessed 30 March 2013).bThe subcellular localization of each protein was predicted using PSORTb 3.0.2 or SOSUI-GramN, which is available online (http://www.psort.org/psortb/index.htmlandhttp://bp.nuap.nagoya-u.ac.jp/sosui/sosuigramn/sosuigramn_submit.html. Accessed 22 January 2013).SpI, signal peptide (signal peptidase I); EC, extracellular; OM, outer membrane; PP: periplasmic; C, cytoplasmic.
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Key Performance Indicators related to Sport
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*frameshift at the N-terminus+ PSORTb bacterial protein localization prediction tool (http://www.psort.org/psortb/)
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Categorical variables are reported as % (Number), while continuous variables are reported as mean ± standard deviation.
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Summary statistics for pear genes based on RNA-seq data.
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TwitterAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
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aAbbreviation of cellular role categories of theoretical (http://www.ncbi.nlm.gov/COG/).bAbbreviation of cellular location. Protein cellular location was annotated by PSORTb V. 2.0 (http://www.psort.org/). C: Cytoplasmic, P: Periplasmic, U: Unknown, OM: OuterMembrane, CM: CytoplasmicMembrane.cProteins upshifted in the BMΔvirB mutant are marked with “+”, and those downshifted with “−”; unique protein spots in BM are marked with “Y”, and in BMΔvirB with “T”.