- Z
Code and Data Availability of the manuscript: Mapping tree diversity in the...
- data.niaid.nih.gov
- zenodo.org
Updated Feb 4, 2021
Share
Facebook
Twitter
EmailClick to copy linkLink copiedCiteJ. Camilo Fagua (2021). Code and Data Availability of the manuscript: Mapping tree diversity in the tropical forest region of Chocó-Colombia [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_4495634Dataset updatedFeb 4, 2021Dataset provided byPatrick Burns
Patrick Jantz
J. Camilo FaguaLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyArea coveredChoco, ColombiaDescriptionCode and Data Availability of the manuscript: Mapping tree diversity in the tropical forest region of Chocó-Colombia
In revision at Environmental Research letters.
J. Camilo Fagua1*, Patrick Jantz1, Patrick Burns1, Richard Massey1, Jeiner Y. Buitrago2, Sassan Saatchi3
and Scott J. Goetz1
1 Global Earth Observation & Dynamics of Ecosystems Lab (GEODE), School of Informatics, Computing, and Cyber Systems (SICCS), Northern Arizona University, Flagstaff, Arizona, US.
2 Department of Agronomy, Faculty of Agricultural Sciences, Universidad Nacional de Colombia. Bogota (Colombia).
3 Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
*Corresponding author: J. Camilo Fagua, School of Informatics, Computing, and Cyber Systems (Building #90) 1295 S. Knoles Dr. Flagstaff, AZ 86011. Email: Camilo.Fagua@nau.edu
1) The files “0_Forest_Structure_maps_in_tif” and “1_Forest_Structure_maps_in_tif” contain seven maps of forest structural metrics for the Chocó region of Colombia in the raster format .tif
(a) Canopy height (CH) map: CHOCO_MAP_CH
(b) 50th percentile of heights (z_50) map: CHOCO_MAP_z_50
(c) Vertical Canopy Heterogeneity (VCH) map: CHOCO_MAP_VCH
(d) Standard deviation of normalized heights (z_SD) map: CHOCO_MAP_z_SD
(e) Horizontal standard deviation of canopy height (CH_ SD): CHOCO_MAP_CH_SD
(f) Horizontal heterogeneity of canopy height (CH_H): CHOCO_MAP_CH_H
(g) Rumple Index of canopy height (R_INDEX): CHOCO_MAP_R_INDEX
2) The file “2_Diversity_maps_in_tif” contains five maps of forest structural metrics for the Chocó region of Colombia in the raster format .tif
(a) Species richness (Richness): MAPS_MEAN_Richness
(b) Shannon’s entropy index (ENS-Shannon): MAPS_MEAN_ENS_shannon
(c) Simpson’s concentration index (ENS-Simpson): MAPS_MEAN_ENS_Simpson
(d) Shannon diversity index (H): MAPS_MEAN_Shannon
(e) Simpson diversity index (D): MAPS_MEAN_Simpson
3) The file “3_LiDAR_processing” contents data and R codes to estimate forest structural metrics from ALS-LiDAR data (.las) in an Amazon moist forest.
Description of localities and individuals used in the barcode analyses. For...
- plos.figshare.com
xlsUpdated Jun 10, 2023ShareFacebookTwitterEmailClick to copy linkLink copiedCiteCarlos E. Guarnizo; Andrea Paz; Astrid Muñoz-Ortiz; Sandra V. Flechas; Javier Méndez-Narváez; Andrew J. Crawford (2023). Description of localities and individuals used in the barcode analyses. For map codes see Fig 1. [Dataset]. http://doi.org/10.1371/journal.pone.0127312.t001xlsAvailable download formatsUnique identifierhttps://doi.org/10.1371/journal.pone.0127312.t001Dataset updatedJun 10, 2023AuthorsCarlos E. Guarnizo; Andrea Paz; Astrid Muñoz-Ortiz; Sandra V. Flechas; Javier Méndez-Narváez; Andrew J. CrawfordLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescriptionLocalities are ordered from north to south.
Not seeing a result you expected?
Learn how you can add new datasets to our index.
FacebookTwitterEmailCode and Data Availability of the manuscript: Mapping tree diversity in the tropical forest region of Chocó-Colombia
Patrick Jantz
J. Camilo Fagua
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
Code and Data Availability of the manuscript: Mapping tree diversity in the tropical forest region of Chocó-Colombia
In revision at Environmental Research letters.
J. Camilo Fagua1*, Patrick Jantz1, Patrick Burns1, Richard Massey1, Jeiner Y. Buitrago2, Sassan Saatchi3
and Scott J. Goetz1
1 Global Earth Observation & Dynamics of Ecosystems Lab (GEODE), School of Informatics, Computing, and Cyber Systems (SICCS), Northern Arizona University, Flagstaff, Arizona, US.
2 Department of Agronomy, Faculty of Agricultural Sciences, Universidad Nacional de Colombia. Bogota (Colombia).
3 Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
*Corresponding author: J. Camilo Fagua, School of Informatics, Computing, and Cyber Systems (Building #90) 1295 S. Knoles Dr. Flagstaff, AZ 86011. Email: Camilo.Fagua@nau.edu
1) The files “0_Forest_Structure_maps_in_tif” and “1_Forest_Structure_maps_in_tif” contain seven maps of forest structural metrics for the Chocó region of Colombia in the raster format .tif
(a) Canopy height (CH) map: CHOCO_MAP_CH
(b) 50th percentile of heights (z_50) map: CHOCO_MAP_z_50
(c) Vertical Canopy Heterogeneity (VCH) map: CHOCO_MAP_VCH
(d) Standard deviation of normalized heights (z_SD) map: CHOCO_MAP_z_SD
(e) Horizontal standard deviation of canopy height (CH_ SD): CHOCO_MAP_CH_SD
(f) Horizontal heterogeneity of canopy height (CH_H): CHOCO_MAP_CH_H
(g) Rumple Index of canopy height (R_INDEX): CHOCO_MAP_R_INDEX
2) The file “2_Diversity_maps_in_tif” contains five maps of forest structural metrics for the Chocó region of Colombia in the raster format .tif
(a) Species richness (Richness): MAPS_MEAN_Richness
(b) Shannon’s entropy index (ENS-Shannon): MAPS_MEAN_ENS_shannon
(c) Simpson’s concentration index (ENS-Simpson): MAPS_MEAN_ENS_Simpson
(d) Shannon diversity index (H): MAPS_MEAN_Shannon
(e) Simpson diversity index (D): MAPS_MEAN_Simpson
3) The file “3_LiDAR_processing” contents data and R codes to estimate forest structural metrics from ALS-LiDAR data (.las) in an Amazon moist forest.