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Raw data outputs 1-18 Raw data output 1. Differentially expressed genes in AML CSCs compared with GTCs as well as in TCGA AML cancer samples compared with normal ones. This data was generated based on the results of AML microarray and TCGA data analysis. Raw data output 2. Commonly and uniquely differentially expressed genes in AML CSC/GTC microarray and TCGA bulk RNA-seq datasets. This data was generated based on the results of AML microarray and TCGA data analysis. Raw data output 3. Common differentially expressed genes between training and test set samples the microarray dataset. This data was generated based on the results of AML microarray data analysis. Raw data output 4. Detailed information on the samples of the breast cancer microarray dataset (GSE52327) used in this study. Raw data output 5. Differentially expressed genes in breast CSCs compared with GTCs as well as in TCGA BRCA cancer samples compared with normal ones. Raw data output 6. Commonly and uniquely differentially expressed genes in breast cancer CSC/GTC microarray and TCGA BRCA bulk RNA-seq datasets. This data was generated based on the results of breast cancer microarray and TCGA BRCA data analysis. CSC, and GTC are abbreviations of cancer stem cell, and general tumor cell, respectively. Raw data output 7. Differential and common co-expression and protein-protein interaction of genes between CSC and GTC samples. This data was generated based on the results of AML microarray and STRING database-based protein-protein interaction data analysis. CSC, and GTC are abbreviations of cancer stem cell, and general tumor cell, respectively. Raw data output 8. Differentially expressed genes between AML dormant and active CSCs. This data was generated based on the results of AML scRNA-seq data analysis. Raw data output 9. Uniquely expressed genes in dormant or active AML CSCs. This data was generated based on the results of AML scRNA-seq data analysis. Raw data output 10. Intersections between the targeting transcription factors of AML key CSC genes and differentially expressed genes between AML CSCs vs GTCs and between dormant and active AML CSCs or the uniquely expressed genes in either class of CSCs. Raw data output 11. Targeting desirableness score of AML key CSC genes and their targeting transcription factors. These scores were generated based on an in-house scoring function described in the Methods section. Raw data output 12. CSC-specific targeting desirableness score of AML key CSC genes and their targeting transcription factors. These scores were generated based on an in-house scoring function described in the Methods section. Raw data output 13. The protein-protein interactions between AML key CSC genes with themselves and their targeting transcription factors. This data was generated based on the results of AML microarray and STRING database-based protein-protein interaction data analysis. Raw data output 14. The previously confirmed associations of genes having the highest targeting desirableness and CSC-specific targeting desirableness scores with AML or other cancers’ (stem) cells as well as hematopoietic stem cells. These data were generated based on a PubMed database-based literature mining. Raw data output 15. Drug score of available drugs and bioactive small molecules targeting AML key CSC genes and/or their targeting transcription factors. These scores were generated based on an in-house scoring function described in the Methods section. Raw data output 16. CSC-specific drug score of available drugs and bioactive small molecules targeting AML key CSC genes and/or their targeting transcription factors. These scores were generated based on an in-house scoring function described in the Methods section. Raw data output 17. Candidate drugs for experimental validation. These drugs were selected based on their respective (CSC-specific) drug scores. CSC is the abbreviation of cancer stem cell. Raw data output 18. Detailed information on the samples of the AML microarray dataset GSE30375 used in this study.
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HR analytics, also referred to as people analytics, workforce analytics, or talent analytics, involves gathering together, analyzing, and reporting HR data. It is the collection and application of talent data to improve critical talent and business outcomes. It enables your organization to measure the impact of a range of HR metrics on overall business performance and make decisions based on data. They are primarily responsible for interpreting and analyzing vast datasets.
Download the data CSV files here ; https://drive.google.com/drive/folders/18mQalCEyZypeV8TJeP3SME_R6qsCS2Og
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TwitterThis dashboard was created from data published by Olist Store (a Brazilian e-commerce public dataset). Raw data contains information about 100 000 orders from 2016 to 2018 placed in many regions of Brazil.
The raw datasets were imported into Excel using “Get data” option (formerly known as “Power Query”) and cleaned. An additional table with the names of Brazilian states was also imported from the Wikipedia page.
A Data Table about payment information was created based on imported statistics with the usage of nested formulas. Then, proper pivot charts were used to build an Olist Store Payment Dashboard which allows you to review the data using a connected timeline and slicers.
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Here you can find raw data and information about each of the 34 datasets generated by the mulset algorithm and used for further analysis in SIMON. Each dataset is stored in separate folder which contains 4 files: json_info: This file contains, number of features with their names and number of subjects that are available for the same dataset data_testing: data frame with data used to test trained model data_training: data frame with data used to train models results: direct unfiltered data from database Files are written in feather format. Here is an example of data structure for each file in repository. File was compressed using 7-Zip available at https://www.7-zip.org/.
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This repository was created for my Master's thesis in Computational Intelligence and Internet of Things at the University of Córdoba, Spain. The purpose of this repository is to store the datasets found that were used in some of the studies that served as research material for this Master's thesis. Also, the datasets used in the experimental part of this work are included.
Below are the datasets specified, along with the details of their references, authors, and download sources.
----------- STS-Gold Dataset ----------------
The dataset consists of 2026 tweets. The file consists of 3 columns: id, polarity, and tweet. The three columns denote the unique id, polarity index of the text and the tweet text respectively.
Reference: Saif, H., Fernandez, M., He, Y., & Alani, H. (2013). Evaluation datasets for Twitter sentiment analysis: a survey and a new dataset, the STS-Gold.
File name: sts_gold_tweet.csv
----------- Amazon Sales Dataset ----------------
This dataset is having the data of 1K+ Amazon Product's Ratings and Reviews as per their details listed on the official website of Amazon. The data was scraped in the month of January 2023 from the Official Website of Amazon.
Owner: Karkavelraja J., Postgraduate student at Puducherry Technological University (Puducherry, Puducherry, India)
Features:
License: CC BY-NC-SA 4.0
File name: amazon.csv
----------- Rotten Tomatoes Reviews Dataset ----------------
This rating inference dataset is a sentiment classification dataset, containing 5,331 positive and 5,331 negative processed sentences from Rotten Tomatoes movie reviews. On average, these reviews consist of 21 words. The first 5331 rows contains only negative samples and the last 5331 rows contain only positive samples, thus the data should be shuffled before usage.
This data is collected from https://www.cs.cornell.edu/people/pabo/movie-review-data/ as a txt file and converted into a csv file. The file consists of 2 columns: reviews and labels (1 for fresh (good) and 0 for rotten (bad)).
Reference: Bo Pang and Lillian Lee. Seeing stars: Exploiting class relationships for sentiment categorization with respect to rating scales. In Proceedings of the 43rd Annual Meeting of the Association for Computational Linguistics (ACL'05), pages 115–124, Ann Arbor, Michigan, June 2005. Association for Computational Linguistics
File name: data_rt.csv
----------- Preprocessed Dataset Sentiment Analysis ----------------
Preprocessed amazon product review data of Gen3EcoDot (Alexa) scrapped entirely from amazon.in
Stemmed and lemmatized using nltk.
Sentiment labels are generated using TextBlob polarity scores.
The file consists of 4 columns: index, review (stemmed and lemmatized review using nltk), polarity (score) and division (categorical label generated using polarity score).
DOI: 10.34740/kaggle/dsv/3877817
Citation: @misc{pradeesh arumadi_2022, title={Preprocessed Dataset Sentiment Analysis}, url={https://www.kaggle.com/dsv/3877817}, DOI={10.34740/KAGGLE/DSV/3877817}, publisher={Kaggle}, author={Pradeesh Arumadi}, year={2022} }
This dataset was used in the experimental phase of my research.
File name: EcoPreprocessed.csv
----------- Amazon Earphones Reviews ----------------
This dataset consists of a 9930 Amazon reviews, star ratings, for 10 latest (as of mid-2019) bluetooth earphone devices for learning how to train Machine for sentiment analysis.
This dataset was employed in the experimental phase of my research. To align it with the objectives of my study, certain reviews were excluded from the original dataset, and an additional column was incorporated into this dataset.
The file consists of 5 columns: ReviewTitle, ReviewBody, ReviewStar, Product and division (manually added - categorical label generated using ReviewStar score)
License: U.S. Government Works
Source: www.amazon.in
File name (original): AllProductReviews.csv (contains 14337 reviews)
File name (edited - used for my research) : AllProductReviews2.csv (contains 9930 reviews)
----------- Amazon Musical Instruments Reviews ----------------
This dataset contains 7137 comments/reviews of different musical instruments coming from Amazon.
This dataset was employed in the experimental phase of my research. To align it with the objectives of my study, certain reviews were excluded from the original dataset, and an additional column was incorporated into this dataset.
The file consists of 10 columns: reviewerID, asin (ID of the product), reviewerName, helpful (helpfulness rating of the review), reviewText, overall (rating of the product), summary (summary of the review), unixReviewTime (time of the review - unix time), reviewTime (time of the review (raw) and division (manually added - categorical label generated using overall score).
Source: http://jmcauley.ucsd.edu/data/amazon/
File name (original): Musical_instruments_reviews.csv (contains 10261 reviews)
File name (edited - used for my research) : Musical_instruments_reviews2.csv (contains 7137 reviews)
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TwitterSupply chain analytics is a valuable part of data-driven decision-making in various industries such as manufacturing, retail, healthcare, and logistics. It is the process of collecting, analyzing and interpreting data related to the movement of products and services from suppliers to customers.
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This dataset is part of my PhD research on malware detection and classification using Deep Learning. It contains static analysis data: Raw PE byte stream rescaled to a 32 x 32 greyscale image using the Nearest Neighbor Interpolation algorithm and then flattened to a 1024 bytes vector. PE malware examples were downloaded from virusshare.com. PE goodware examples were downloaded from portableapps.com and from Windows 7 x86 directories.
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Each individual result graph is associated with 4 different comma-separated files: (i) Raw—the (anonymised) raw data behind the means and standard deviations used for a particular result graph; (ii) Paired—the paired statistical significance results; (iii) Successive Male—the statistical significance results to compare successive groups (age and ability) for male runners; and (iv) Successive Female—the corresponding results for the statistical significance tests to compare successive groups (age and ability) of female runners. (ZIP)
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The Target Products Dataset is a robust collection in CSV format, featuring 1.3 million product records sourced from Target's online platform. This dataset contains rich details on a wide range of products, including product titles, URLs, pricing, availability, and more. It is an ideal resource for businesses, researchers, and data scientists interested in analyzing retail trends, product availability, and pricing strategies.
Key Data Fields:
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Treevill: N.B.G. Unique & Rare Raw Dataset
This dataset, named Treevill: N.B.G. Unique & Rare Raw Dataset, is a collection of images sourced from the National Botanical Garden of Bangladesh (N.B.G.), showcasing a variety of unique and rare tree species. The dataset contains a total of 66 folders, each representing a specific tree species. For each species, approximately 2000 images are included, all resized to 256x256 pixels in JPEG format.
The dataset is intended for research, educational, and machine learning purposes, particularly in the fields of image classification, object recognition, and biodiversity studies. The high number of images per tree species ensures diversity in terms of tree angles, lighting, and conditions, which can be crucial for training machine learning models for species identification.
Procedure for Data Collection and Organization:
Data Collection: Images were collected from the National Botanical Garden of Bangladesh. Each tree species was carefully documented, ensuring that images captured a variety of perspectives and conditions for each species. Image Resizing: All images were resized to a standard resolution of 256x256 pixels for consistency in the dataset. Format Standardization: All images were converted into JPEG format, ensuring uniformity and ease of use in various applications. Folder Organization: Each species was assigned a unique folder in the dataset. These folders are named after the species they represent and contain approximately 2000 images each. Final Dataset: The final dataset consists of 66 folders, each dedicated to a specific tree species, making it easier to access and analyze the data for various tree-related research purposes.
List of Folders (Tree Species):
Akashmoni Aloe Wood Ashok Ashore Australian Pine Avocado Bahera Bamboo Banana Baro bottle brush Bazna Belati gab Bishop wood Blue Bellvine Buddha Coconut Camphor Tree Cannonball Tree Carambola Champaca Chaplash Civit Corkwood Crown Gardenia Debdaeu Devil Tree Dvils Cotton East Indian copaiba balsam Egyptian lotus Golden Shower Tree Guava Hairy Sterculia Haldu Haritaki Heaven Lotus Hijol Holudkrishnachura India Red Pear Jack Fruit Jiga Kamala Tree Kanjal Karanja Karen Wood Khejur Koinar Loha kat Mahogany Makri-shal Mango Marking Nut tree Mastwood Mexican lilac Mouskanda Nageshore Palm Piliostigma Prickly Tree Raktan Roskau Sada Golachi Shail Vadi Sisso Soap Nut Tree Teak The Poonspar Tree Udaya padda
Source: National Botanical Garden, Zoo Road, Dhaka, Bangladesh
Related links:
Shuvo, Shuvo Kumar Basak (2025), “Treevill: National Botanical Garden Unique & Rare Tree Argument Dataset ”, Mendeley Data, V1, doi: 10.17632/t7rwzgbfdd.1
https://doi.org/10.34740/KAGGLE/DSV/10582625
https://doi.org/10.34740/KAGGLE/DSV/10579609
https://doi.org/10.34740/KAGGLE/DSV/10579122
Treevill: N.B.G. Unique & Rare Raw Dataset - Access, Collaboration, and Paid Services Policy
I, Shuvo Kumar Basak, have created and curated the Treevill: N.B.G. Unique & Rare Raw Dataset, which consists of images of unique and rare tree species collected from the National Botanical Garden of Bangladesh. This dataset is freely available for research, educational, and non-commercial purposes.
Free Access to the Dataset: The Treevill: N.B.G. Unique & Rare Raw Dataset is available free of charge to all individuals and organizations for educational and research use. This is to support the advancement of knowledge and studies related to biodiversity, machine learning, and related fields.
Future Collaboration and Data Requests: While the dataset is provided free of charge, I encourage individuals and organizations to contact me directly if they need access to additional related data, further assistance, or if they plan on expanding their research in the future.
If you require any new data or specific related datasets, feel free to reach out to me, Shuvo Kumar Basak, for collaboration. I am happy to assist with additional data collection, cleaning, resizing, or other related services at a reasonable cost.
Paid Services - Hire for Data Collection: If you or your organization need custom data collection or wish to obtain related datasets beyond what is included in this collection, I offer a paid service to gather new data according to your specific requirements. This includes: Custom data collection for other tree species or related botanical data.
Data cleaning, resizing, and preprocessing to make the data ready for analysis.
Please contact me for a custom quote based on your specific needs. I will work with you to provide high-quality, tailored datasets to support your research, project, or business needs. Terms and Conditions: The dataset is intended for academic, research, and non-commercial purposes only. Redistribution or commercial use of the dataset without prior written co...
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The Dirty Retail Store Sales dataset contains 12,575 rows of synthetic data representing sales transactions from a retail store. The dataset includes eight product categories with 25 items per category, each having static prices. It is designed to simulate real-world sales data, including intentional "dirtiness" such as missing or inconsistent values. This dataset is suitable for practicing data cleaning, exploratory data analysis (EDA), and feature engineering.
retail_store_sales.csv| Column Name | Description | Example Values |
|---|---|---|
Transaction ID | A unique identifier for each transaction. Always present and unique. | TXN_1234567 |
Customer ID | A unique identifier for each customer. 25 unique customers. | CUST_01 |
Category | The category of the purchased item. | Food, Furniture |
Item | The name of the purchased item. May contain missing values or None. | Item_1_FOOD, None |
Price Per Unit | The static price of a single unit of the item. May contain missing or None values. | 4.00, None |
Quantity | The quantity of the item purchased. May contain missing or None values. | 1, None |
Total Spent | The total amount spent on the transaction. Calculated as Quantity * Price Per Unit. | 8.00, None |
Payment Method | The method of payment used. May contain missing or invalid values. | Cash, Credit Card |
Location | The location where the transaction occurred. May contain missing or invalid values. | In-store, Online |
Transaction Date | The date of the transaction. Always present and valid. | 2023-01-15 |
Discount Applied | Indicates if a discount was applied to the transaction. May contain missing values. | True, False, None |
The dataset includes the following categories, each containing 25 items with corresponding codes, names, and static prices:
| Item Code | Item Name | Price |
|---|---|---|
| Item_1_EHE | Blender | 5.0 |
| Item_2_EHE | Microwave | 6.5 |
| Item_3_EHE | Toaster | 8.0 |
| Item_4_EHE | Vacuum Cleaner | 9.5 |
| Item_5_EHE | Air Purifier | 11.0 |
| Item_6_EHE | Electric Kettle | 12.5 |
| Item_7_EHE | Rice Cooker | 14.0 |
| Item_8_EHE | Iron | 15.5 |
| Item_9_EHE | Ceiling Fan | 17.0 |
| Item_10_EHE | Table Fan | 18.5 |
| Item_11_EHE | Hair Dryer | 20.0 |
| Item_12_EHE | Heater | 21.5 |
| Item_13_EHE | Humidifier | 23.0 |
| Item_14_EHE | Dehumidifier | 24.5 |
| Item_15_EHE | Coffee Maker | 26.0 |
| Item_16_EHE | Portable AC | 27.5 |
| Item_17_EHE | Electric Stove | 29.0 |
| Item_18_EHE | Pressure Cooker | 30.5 |
| Item_19_EHE | Induction Cooktop | 32.0 |
| Item_20_EHE | Water Dispenser | 33.5 |
| Item_21_EHE | Hand Blender | 35.0 |
| Item_22_EHE | Mixer Grinder | 36.5 |
| Item_23_EHE | Sandwich Maker | 38.0 |
| Item_24_EHE | Air Fryer | 39.5 |
| Item_25_EHE | Juicer | 41.0 |
| Item Code | Item Name | Price |
|---|---|---|
| Item_1_FUR | Office Chair | 5.0 |
| Item_2_FUR | Sofa | 6.5 |
| Item_3_FUR | Coffee Table | 8.0 |
| Item_4_FUR | Dining Table | 9.5 |
| Item_5_FUR | Bookshelf | 11.0 |
| Item_6_FUR | Bed F... |
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This dataset presents the quantitative raw data that was collected under the H2020 RRI2SCALE project for the D1.4 - “Large scale regional citizen surveys report”. The dataset includes the answers that were provided by almost 8,000 participants from 4 pilot European regions (Kriti, Vestland, Galicia, and Overijssel) regarding the general public's views, concerns, and moral issues about the current and future trajectories of their RTD&I ecosystem. The original survey questionnaire was created by White Research SRL and disseminated to the regions through supporting pilot partners. Data collection took place from June 2020 to September 2020 through 4 different waves – one for each region. Based on the conclusion of a consortium vote during the kick-off meeting, it was decided that instead of resource-intensive methods that would render data collection unduly expensive, to fill in the quotas responses were collected through online panels by survey companies that were used for each region. For the statistical analysis of the data and the conclusions drawn from the analysis, you can access the "Large scale regional citizen surveys report" (D1.4).
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TwitterDataset Card for dataset-tsql-data-analysis
This dataset has been created with distilabel.
Dataset Summary
This dataset contains a pipeline.yaml which can be used to reproduce the pipeline that generated it in distilabel using the distilabel CLI: distilabel pipeline run --config "https://huggingface.co/datasets/dmeldrum6/dataset-tsql-data-analysis/raw/main/pipeline.yaml"
or explore the configuration: distilabel pipeline info --config… See the full description on the dataset page: https://huggingface.co/datasets/dmeldrum6/dataset-tsql-data-analysis.
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Sheet 1 (Raw-Data): The raw data of the study is provided, presenting the tagging results for the used measures described in the paper. For each subject, it includes multiple columns: A. a sequential student ID B an ID that defines a random group label and the notation C. the used notation: user Story or use Cases D. the case they were assigned to: IFA, Sim, or Hos E. the subject's exam grade (total points out of 100). Empty cells mean that the subject did not take the first exam F. a categorical representation of the grade L/M/H, where H is greater or equal to 80, M is between 65 included and 80 excluded, L otherwise G. the total number of classes in the student's conceptual model H. the total number of relationships in the student's conceptual model I. the total number of classes in the expert's conceptual model J. the total number of relationships in the expert's conceptual model K-O. the total number of encountered situations of alignment, wrong representation, system-oriented, omitted, missing (see tagging scheme below) P. the researchers' judgement on how well the derivation process explanation was explained by the student: well explained (a systematic mapping that can be easily reproduced), partially explained (vague indication of the mapping ), or not present.
Tagging scheme:
Aligned (AL) - A concept is represented as a class in both models, either
with the same name or using synonyms or clearly linkable names;
Wrongly represented (WR) - A class in the domain expert model is
incorrectly represented in the student model, either (i) via an attribute,
method, or relationship rather than class, or
(ii) using a generic term (e.g., user'' instead ofurban
planner'');
System-oriented (SO) - A class in CM-Stud that denotes a technical
implementation aspect, e.g., access control. Classes that represent legacy
system or the system under design (portal, simulator) are legitimate;
Omitted (OM) - A class in CM-Expert that does not appear in any way in
CM-Stud;
Missing (MI) - A class in CM-Stud that does not appear in any way in
CM-Expert.
All the calculations and information provided in the following sheets
originate from that raw data.
Sheet 2 (Descriptive-Stats): Shows a summary of statistics from the data collection,
including the number of subjects per case, per notation, per process derivation rigor category, and per exam grade category.
Sheet 3 (Size-Ratio):
The number of classes within the student model divided by the number of classes within the expert model is calculated (describing the size ratio). We provide box plots to allow a visual comparison of the shape of the distribution, its central value, and its variability for each group (by case, notation, process, and exam grade) . The primary focus in this study is on the number of classes. However, we also provided the size ratio for the number of relationships between student and expert model.
Sheet 4 (Overall):
Provides an overview of all subjects regarding the encountered situations, completeness, and correctness, respectively. Correctness is defined as the ratio of classes in a student model that is fully aligned with the classes in the corresponding expert model. It is calculated by dividing the number of aligned concepts (AL) by the sum of the number of aligned concepts (AL), omitted concepts (OM), system-oriented concepts (SO), and wrong representations (WR). Completeness on the other hand, is defined as the ratio of classes in a student model that are correctly or incorrectly represented over the number of classes in the expert model. Completeness is calculated by dividing the sum of aligned concepts (AL) and wrong representations (WR) by the sum of the number of aligned concepts (AL), wrong representations (WR) and omitted concepts (OM). The overview is complemented with general diverging stacked bar charts that illustrate correctness and completeness.
For sheet 4 as well as for the following four sheets, diverging stacked bar
charts are provided to visualize the effect of each of the independent and mediated variables. The charts are based on the relative numbers of encountered situations for each student. In addition, a "Buffer" is calculated witch solely serves the purpose of constructing the diverging stacked bar charts in Excel. Finally, at the bottom of each sheet, the significance (T-test) and effect size (Hedges' g) for both completeness and correctness are provided. Hedges' g was calculated with an online tool: https://www.psychometrica.de/effect_size.html. The independent and moderating variables can be found as follows:
Sheet 5 (By-Notation):
Model correctness and model completeness is compared by notation - UC, US.
Sheet 6 (By-Case):
Model correctness and model completeness is compared by case - SIM, HOS, IFA.
Sheet 7 (By-Process):
Model correctness and model completeness is compared by how well the derivation process is explained - well explained, partially explained, not present.
Sheet 8 (By-Grade):
Model correctness and model completeness is compared by the exam grades, converted to categorical values High, Low , and Medium.
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TwitterThis repository contains the data and code necessary to replicate all figures and tables in the working paper: "Does the disclosure of gun ownership affect crime? Evidence from New York" by Daniel Tannenbaum
There are four folders in this repository:(1) Build: contains all the .do files required to produce the analysis datasets, using the raw data (i.e. datasets in the RawData folder).(2) Analysis: contains all the .do files required to produce all the figures and tables in the paper, using the analysis datasets (i.e. datasets in the AnalysisData folder).(3) RawData: contains all the raw datasets used to produce the AnalysisData datasets. The only raw dataset used in the paper that is excluded from this folder is the proprietary housing assessor and sales transaction data from DataQuick, owned by Corelogic. If I receive approval to include this raw data in this repository I will do so in future versions of this repository.(4) AnalysisData: contains all the analysis datasets that are created using the Build and are used to produce the tables and figures in the paper.
Running the file Master_analysis.do in the Analysis folder will produce, in one script, all the tables and figures in the paper.
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This formatted dataset (AnalysisDatabaseGBD) originates from raw data files from the Institute of Health Metrics and Evaluation (IHME) Global Burden of Disease Study (GBD2017) affiliated with the University of Washington. We are volunteer collaborators with IHME and not employed by IHME or the University of Washington.
The population weighted GBD2017 data are on male and female cohorts ages 15-69 years including noncommunicable diseases (NCDs), body mass index (BMI), cardiovascular disease (CVD), and other health outcomes and associated dietary, metabolic, and other risk factors. The purpose of creating this population-weighted, formatted database is to explore the univariate and multiple regression correlations of health outcomes with risk factors. Our research hypothesis is that we can successfully model NCDs, BMI, CVD, and other health outcomes with their attributable risks.
These Global Burden of disease data relate to the preprint: The EAT-Lancet Commission Planetary Health Diet compared with Institute of Health Metrics and Evaluation Global Burden of Disease Ecological Data Analysis.
The data include the following:
1. Analysis database of population weighted GBD2017 data that includes over 40 health risk factors, noncommunicable disease deaths/100k/year of male and female cohorts ages 15-69 years from 195 countries (the primary outcome variable that includes over 100 types of noncommunicable diseases) and over 20 individual noncommunicable diseases (e.g., ischemic heart disease, colon cancer, etc).
2. A text file to import the analysis database into SAS
3. The SAS code to format the analysis database to be used for analytics
4. SAS code for deriving Tables 1, 2, 3 and Supplementary Tables 5 and 6
5. SAS code for deriving the multiple regression formula in Table 4.
6. SAS code for deriving the multiple regression formula in Table 5
7. SAS code for deriving the multiple regression formula in Supplementary Table 7
8. SAS code for deriving the multiple regression formula in Supplementary Table 8
9. The Excel files that accompanied the above SAS code to produce the tables
For questions, please email davidkcundiff@gmail.com. Thanks.
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TwitterThese datasets are customized Torch Geometric Datasets that contain raw .off polygon meshes as well as preprocessed .pt files needed for training morphVQ models. morphVQ can be found at https://github.com/oothomas/morphVQ.
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TwitterRaw dataset for 90 tree individuals used for the statistical analysis.
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Abbreviations: RCT, randomized controlled trial; MI, multiple imputation. Each permutation test is based on 10,000 permutations of each dataset.
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Abbreviations: ITT-LOCF, intent-to-treat-last observation carried forward; RCT, randomized controlled trial.aIndicates missing data pattern is the same for ITT-LOCF and LOCF. Each permutation test is based on 10,000 permutations of each dataset.
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Raw data outputs 1-18 Raw data output 1. Differentially expressed genes in AML CSCs compared with GTCs as well as in TCGA AML cancer samples compared with normal ones. This data was generated based on the results of AML microarray and TCGA data analysis. Raw data output 2. Commonly and uniquely differentially expressed genes in AML CSC/GTC microarray and TCGA bulk RNA-seq datasets. This data was generated based on the results of AML microarray and TCGA data analysis. Raw data output 3. Common differentially expressed genes between training and test set samples the microarray dataset. This data was generated based on the results of AML microarray data analysis. Raw data output 4. Detailed information on the samples of the breast cancer microarray dataset (GSE52327) used in this study. Raw data output 5. Differentially expressed genes in breast CSCs compared with GTCs as well as in TCGA BRCA cancer samples compared with normal ones. Raw data output 6. Commonly and uniquely differentially expressed genes in breast cancer CSC/GTC microarray and TCGA BRCA bulk RNA-seq datasets. This data was generated based on the results of breast cancer microarray and TCGA BRCA data analysis. CSC, and GTC are abbreviations of cancer stem cell, and general tumor cell, respectively. Raw data output 7. Differential and common co-expression and protein-protein interaction of genes between CSC and GTC samples. This data was generated based on the results of AML microarray and STRING database-based protein-protein interaction data analysis. CSC, and GTC are abbreviations of cancer stem cell, and general tumor cell, respectively. Raw data output 8. Differentially expressed genes between AML dormant and active CSCs. This data was generated based on the results of AML scRNA-seq data analysis. Raw data output 9. Uniquely expressed genes in dormant or active AML CSCs. This data was generated based on the results of AML scRNA-seq data analysis. Raw data output 10. Intersections between the targeting transcription factors of AML key CSC genes and differentially expressed genes between AML CSCs vs GTCs and between dormant and active AML CSCs or the uniquely expressed genes in either class of CSCs. Raw data output 11. Targeting desirableness score of AML key CSC genes and their targeting transcription factors. These scores were generated based on an in-house scoring function described in the Methods section. Raw data output 12. CSC-specific targeting desirableness score of AML key CSC genes and their targeting transcription factors. These scores were generated based on an in-house scoring function described in the Methods section. Raw data output 13. The protein-protein interactions between AML key CSC genes with themselves and their targeting transcription factors. This data was generated based on the results of AML microarray and STRING database-based protein-protein interaction data analysis. Raw data output 14. The previously confirmed associations of genes having the highest targeting desirableness and CSC-specific targeting desirableness scores with AML or other cancers’ (stem) cells as well as hematopoietic stem cells. These data were generated based on a PubMed database-based literature mining. Raw data output 15. Drug score of available drugs and bioactive small molecules targeting AML key CSC genes and/or their targeting transcription factors. These scores were generated based on an in-house scoring function described in the Methods section. Raw data output 16. CSC-specific drug score of available drugs and bioactive small molecules targeting AML key CSC genes and/or their targeting transcription factors. These scores were generated based on an in-house scoring function described in the Methods section. Raw data output 17. Candidate drugs for experimental validation. These drugs were selected based on their respective (CSC-specific) drug scores. CSC is the abbreviation of cancer stem cell. Raw data output 18. Detailed information on the samples of the AML microarray dataset GSE30375 used in this study.