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This repository contains the code used for the study: "Variant Filters Using Segregation Information Improve Mapping of Nectar-Production Genes in Sunflower (Helianthus annuus L.)". The study evaluates the impact of biologically informed variant filtering strategies on QTL mapping, demonstrating improved identification of candidate genes related to nectar production.ContentsCandidateGeneGetter.shThis shell script extracts candidate genes from a GFF annotation file (HAN412_Eugene_curated_v1_1.gff3) based on genomic regions specified in the Windows file. For each region (defined by chromosome, start position, and end position), it identifies all genes falling entirely within that window, counts them, and outputs the region information along with a comma-separated list of gene IDs to AshleyCandidateGenes.txt.Chi_square_template.RThis R script filters genomic markers using a chi-square test based on expected segregation ratios. The script is designed as a template that can be adjusted for different population types by modifying the expected ratios. The default values (48.4375% homozygous for each allele and 3.125% heterozygous) are set for F6 inbred lines, but can be modified to match the segregation expectations of any population being filtered. It retains markers whose observed genotype frequencies do not significantly deviate from expectations (p > 0.1), removing markers with segregation distortion that could interfere with accurate QTL identification.mapping.RThis R script performs QTL (Quantitative Trait Locus) mapping using the qtl package. It includes code for three distinct "Approaches," likely representing analyses performed on different datasets or using varied marker filtering strategies (Approach1.csv, Approach2.csv, Approach3.csv). The script covers data loading, genetic map estimation and refinement (including custom marker thinning functions and visualization of recombination frequencies), calculation of genotype probabilities, performing 1D (scanone), Composite Interval (cim), and 2D (scantwo) QTL scans, significance testing via permutations, and refining QTL models (fitqtl, refineqtl).marker_filt_dist.RThis R script filters genomic markers from a VCF file by removing markers within 125,000 bp of each other. It optimizes marker density while maintaining genome-wide coverage, ensuring the filtered set is suitable for QTL mapping and identifying genomic regions linked to nectar-production traits in sunflower.proc freq marker data.sasThis SAS script filters genetic markers based on segregation patterns. It utilizes PROC FREQ to calculate genotype frequencies for biallelic markers (assuming three genotype classes) and performs chi-square tests against expected segregation ratios (e.g., specified test probabilities like 0.484375, 0.03125, 0.484375, corresponding to F6 expectations). Markers significantly deviating from these expectations (p < 0.10 in this script) are identified and potentially excluded from downstream analyses, similar in principle to Chi_square_template.R but implemented within the SAS environment for specific datasets (markers.bialw).thinning_loop.RThis R script thins genomic markers based on inter-marker distance thresholds, identifying and removing redundant or closely spaced markers. It helps refine marker sets to balance genome coverage and computational efficiency, improving QTL mapping precision in the study of sunflower nectar-production traits. (Note: Similar custom functions are also included within mapping.R).WindowsThis plain text file serves as input for the CandidateGeneGetter.sh script. Each line defines a genomic window with three columns: Chromosome, Start Position, and End Position. These windows likely represent regions of interest identified through QTL mapping or other analyses.CitationBarstow, A.C., McNellie, J.P., Smart, B.C., Keepers, K.G., Prasifka, J.R., Kane, N.C., & Hulke, B.S. (2025). Variant filters using segregation information improve mapping of nectar-production genes in sunflower (Helianthus annuus L.). The Plant Genome.
More and more parents in Poland are aware of the risks their children face when using the internet. In 2022, over 13 percent of parents used parental control filters or other technologies at home to limit access to harmful and unwanted content on the Internet.
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BASE YEAR | 2024 |
HISTORICAL DATA | 2019 - 2023 |
REGIONS COVERED | North America, Europe, APAC, South America, MEA |
REPORT COVERAGE | Revenue Forecast, Competitive Landscape, Growth Factors, and Trends |
MARKET SIZE 2024 | 2128.7(USD Million) |
MARKET SIZE 2025 | 2226.6(USD Million) |
MARKET SIZE 2035 | 3500.0(USD Million) |
SEGMENTS COVERED | Application, Type, End Use, Filter Type, Regional |
COUNTRIES COVERED | US, Canada, Germany, UK, France, Russia, Italy, Spain, Rest of Europe, China, India, Japan, South Korea, Malaysia, Thailand, Indonesia, Rest of APAC, Brazil, Mexico, Argentina, Rest of South America, GCC, South Africa, Rest of MEA |
KEY MARKET DYNAMICS | growing industrial safety regulations, increasing awareness about respiratory health, technological advancements in filtration, rising demand in healthcare sector, expansion in emerging markets |
MARKET FORECAST UNITS | USD Million |
KEY COMPANIES PROFILED | National Safety Apparel, Honeywell, 3M, Alpha Pro Tech, Respirex, MSA Safety, Gerson, Avon Protection, Uvex, Bartlett Instrument Company, KimberlyClark, SAS Safety Corporation, Miller Electric, Drägerwerk |
MARKET FORECAST PERIOD | 2025 - 2035 |
KEY MARKET OPPORTUNITIES | Growing industrial safety regulations, Rising demand in healthcare sector, Increasing awareness of air quality, Technological advancements in filtration, Expansion in emerging markets |
COMPOUND ANNUAL GROWTH RATE (CAGR) | 4.6% (2025 - 2035) |
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X-rays are a powerful probe of activity in the early stages of star formation. They allow us to identify young stars even after they have lost the IR signatures of circumstellar disks and provide constraints on their distance. Here, the authors report on XMM-Newton observations that detected 121 young stellar objects (YSOs) in two fields between the filamentary dark cloud complex Lynds 1641S and the star Kappa Ori. These observations extend the Survey of Orion A with XMM and Spitzer (SOXS). The YSOs are contained in a ring of gas and dust apparent at millimeter wavelengths, and in far-IR and near-IR surveys. The X-ray luminosity function of the YSOs detected in the two fields indicates a distance of 250-280 pc, much closer than the Orion A cloud and similar to the distance estimates for Kappa Ori. The authors propose that the ring is a 5-8 pc diameter shell that has been swept up by Kappa Ori. This ring contains several groups of stars detected by Spitzer and WISE including one surrounding the Herbig Ae/Be star V1818 Ori. In this interpretation, the Kappa Ori ring is one of several shells swept up by massive stars within the Orion Eridanus Superbubble and is unrelated to the southern portion of Orion A/L 1641S. The XMM-Newton observations consist of two fields, north (Field N = KN) and south (Field S = KS), and were obtained in 2015 March 10 and 15 using EPIC as the primary instrument. Table 1 in the reference paper shows the details of the exposures, each one with a duration of about 50 ks and taken with the Medium filter. The authors used SAS version 14.0 to reduce the observation data files (ODFs) and to obtain calibrated lists of events for the MOS and pn instruments. They filtered the events in the 0.3-0.8 keV energy band and used only events with FLAG = 0 and PATTERN < 12 as prescribed by the SAS manual. With SAS, the authors obtained exposure maps in the 0.3-8.0 keV band and performed source detection with a code based on wavelet convolution that operated simultaneously on MOS and pn data. They used a threshold of significance of 4.5 sigma of the local background to discriminate real sources from spurious background fluctuations. However, they added few sources to the final list with significance S in 4.0 < S < 4.5 for the cases of positional match with objects in SIMBAD or PPMX catalogs. The final list was also checked for spurious sources that could appear at the border of the CCDs. In sum, the authors detected 238 X-ray sources with significance > 4 sigma of the local background; 104 sources are in KN and 134 in KS. The authors cross-correlated the positions of the X-ray sources with the coordinates of the IR catalog of Megeath et al. (2012, AJ, 144, 192). This IR catalog is the result of a survey of Orion with Spitzer that produced a classification of protostars and stars with disks. Of the 238 X-ray sources, 191 are identified within 8 arcseconds of one of 206 IR objects, 99 sources in KS, 92 sources in KN. Some X-ray sources were multiple matches within 8 arcsec of IR objects. For these cases, the authors assigned the most likely counterparts based on IR photometry and visual inspection of X-rays and IR images. However, nine X-ray sources were left associated with two or three IR objects. Among the IR matches, the authors found 15 stars with disks in KN and 35 in KS with X-ray detection. One protostar in KN and three in KS were detected in X-rays. The authors used X-ray detection of sources without IR excess as criteria to identify disk-less stars (hereafter Class III stars). They classified as Class III stars those IR objects with X-ray detections, with [4.5um]-[8.0um] colors < 0.3 mag and brighter than [4.5um] magnitude < 14. At the distance of the ONC (400 pc), the [4.5um] magnitude ~ 14 threshold at an age of 4-5 Myrs roughly identifies M3-M4 spectral types and masses around 0.3 solar masses. With this selection scheme, the authors identified 48 objects in KN and 19 in KS as Class III candidates. This table was created by the HEASARC in August 2016 based on the electronic version of Table 2 from the reference paper which was obtained from the CDS (their catalog J/ApJ/820/L28 file table2.dat). This is a service provided by NASA HEASARC .
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France Air Purifiers Market was valued at USD 804.13 Million in 2024 and is expected to reach USD 1071.91 Million by 2030 with a CAGR of 4.97%.
Pages | 70 |
Market Size | 2024: USD 804.13 Million |
Forecast Market Size | 2030: USD 1071.91 Million |
CAGR | 2025-2030: 4.97% |
Fastest Growing Segment | Online |
Largest Market | Northern |
Key Players | 1. Sharp Electronics France SA 2. Panasonic France SAS 3. Xiaomi Technology France S.A.S. 4. Philips France SAS 5. Daikin Europe NV 6. NatéoSanté SAS 7. Teqoya SAS 8. Dantherm Group A/S 9. Arovast Corporation (Levoit) 10. Honeywell International Incorporation |
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The second release of the XMM OM Serendipitous Source Survey Catalogue (XMM-SUSS2) was produced by processing the XMM-Newton Optical Monitor (OM) data obtained from the beginning of the mission (2000) until the end of 2012. The latest release, XMM-SUSS2.1, now includes an extra year of data to the end of 2013. The data processing was performed at the European Space Astronomy Centre (ESAC, Spain) and at Mullard Space Science Laboratory (MSSL UCL, U.K.) by using the XMM Science Analysis Software system (SAS) version 14.0. In addition to covering a larger observation period, this release differs from the first release (XMM-SUSS) by inclusion of all the OM observations (not only those containing UV filters) and by performing source detection on stacked images, thus facilitating the detection of fainter sources. The number of observations (OBSIDs) included in the catalogue is 7,170. The total number of entries included in the catalogue is 6,246,432. They correspond to 4,329,363 sources, of which 831,582 have multiple entries in the source table, corresponding to different observations. Cone search capability for table II/340/xmmom2_1 (The XMM-Newton Optical Monitor Serendipitous Source Survey Catalogue, Version 2.1 (April 2015, XMM-SUSS2.1)) Cone search capability for table II/340/summary (Summary of observations used)
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