Output from programming code written to summarize data describing 2018 MCSP Trial monitoring sites acquired using a SOP 1 (see ServCat reference 103364) of FWS Legacy Regions 2 and 3. Monitoring sites were selected using a custom GRTS draw conducted by USGS in 2017, within monitoring areas associated with select NWRS stations. Areas monitored included Balcones Canyonlands (TX), Hagerman (TX), Washita (OK), Neal Smith (IA) NWRs and several locations near the town of Lamoni, Iowa and private lands in northern Missouri.

File List Code_and_Data_Supplement.zip (md5: dea8636b921f39c9d3fd269e44b6228c) Description The supplementary material provided includes all code and data files necessary to replicate the simulation models other demographic analyses presented in the paper. MATLAB code is provided for the simulations, and SAS code is provided to show how model parameters (vital rates) were estimated.

  The principal programs are Figure_3_4_5_Elasticity_Contours.m and Figure_6_Contours_Stochastic_Lambda.m which perform the elasticity analyses and run the stochastic simulation, respectively.


  The files are presented in a zipped folder called Code_and_Data_Supplement. When uncompressed, users may run the MATLAB programs by opening them from within this directory. Subdirectories contain the data files and supporting MATLAB functions necessary to complete execution. The programs are written to find the necessary supporting functions in the Code_and_Data_Supplement directory. If users copy these MATLAB files to a different directory, they must add the Code_and_Data_Supplement directory and its subdirectories to their search path to make the supporting files available.


  More details are provided in the README.txt file included in the supplement.


  The file and directory structure of entire zipped supplement is shown below.

  Folder PATH listing
Code_and_Data_Supplement
|  Figure_3_4_5_Elasticity_Contours.m
|  Figure_6_Contours_Stochastic_Lambda.m
|  Figure_A1_RefitG2.m
|  Figure_A2_PlotFecundityRegression.m
|  README.txt
|  
+---FinalDataFiles
+---Make Tables
|    README.txt
|    Table_lamANNUAL.csv
|    Table_mgtProbPredicted.csv
|    
+---ParameterEstimation
|  |  Categorical Model output.xls
|  |  
|  +---Fecundity
|  |    Appendix_A3_Fecundity_Breakpoint.sas
|  |    fec_Cat_Indiv.sas
|  |    Mean_Fec_Previous_Study.m
|  |    
|  +---G1
|  |    G1_Cat.sas
|  |    
|  +---G2
|  |    G2_Cat.sas
|  |    
|  +---Model Ranking
|  |    Categorical Model Ranking.xls
|  |    
|  +---Seedlings
|  |    sdl_Cat.sas
|  |    
|  +---SS
|  |    SS_Cat.sas
|  |    
|  +---SumSrv
|  |    sum_Cat.sas
|  |    
|  \---WinSrv
|      modavg.m
|      winCatModAvgfitted.m
|      winCatModAvgLinP.m
|      winCatModAvgMu.m
|      win_Cat.sas
|      
+---ProcessedDatafiles
|    fecdat_gm_param_est_paper.mat
|    hierarchical_parameters.mat
|    refitG2_param_estimation.mat
|    
\---Required_Functions
  |  hline.m
  |  hmstoc.m
  |  Jeffs_Figure_Settings.m
  |  Jeffs_startup.m
  |  newbootci.m
  |  sem.m
  |  senstuff.m
  |  vline.m
  |  
  +---export_fig
  |    change_value.m
  |    eps2pdf.m
  |    export_fig.m
  |    fix_lines.m
  |    ghostscript.m
  |    license.txt
  |    pdf2eps.m
  |    pdftops.m
  |    print2array.m
  |    print2eps.m
  |    
  +---lowess
  |    license.txt
  |    lowess.m
  |    
  +---Multiprod_2009
  |  |  Appendix A - Algorithm.pdf
  |  |  Appendix B - Testing speed and memory usage.pdf
  |  |  Appendix C - Syntaxes.pdf
  |  |  license.txt
  |  |  loc2loc.m
  |  |  MULTIPROD Toolbox Manual.pdf
  |  |  multiprod.m
  |  |  multitransp.m
  |  |  
  |  \---Testing
  |    |  arraylab13.m
  |    |  arraylab131.m
  |    |  arraylab132.m
  |    |  arraylab133.m
  |    |  genop.m
  |    |  multiprod13.m
  |    |  readme.txt
  |    |  sysrequirements_for_testing.m
  |    |  testing_memory_usage.m
  |    |  testMULTIPROD.m
  |    |  timing_arraylab_engines.m
  |    |  timing_matlab_commands.m
  |    |  timing_MX.m
  |    |  
  |    \---Data
  |        Memory used by MATLAB statements.xls
  |        Timing results.xlsx
  |        timing_MX.txt
  |        
  +---province
  |    PROVINCE.DBF
  |    province.prj
  |    PROVINCE.SHP
  |    PROVINCE.SHX
  |    README.txt
  |    
  +---SubAxis
  |    parseArgs.m
  |    subaxis.m
  |    
  +---suplabel
  |    license.txt
  |    suplabel.m
  |    suplabel_test.m
  |    
  \---tight_subplot
      license.txt
      tight_subplot.m

Output from programming code written to summarize immature monarch butterfly, milkweed and nectar plant abundance from monitoring data acquired using a grid of 1 square-meter quadrats at custom 2017 GRTS draw sites within select monitoring areas (see SOP 3 in ServCat reference 103368 for methods) of FWS Legacy Regions 2 and 3. Areas monitored included Balcones Canyonlands (TX), Hagerman (TX), Washita (OK), Neal Smith (IA) NWRs and several locations near the town of Lamoni, Iowa and northern Missouri. Input data file is named 'FWS_2018_MonMonSOP3DS1_forSAS.csv' and is stored in ServCat reference 137698. See SM 5 (ServCat reference 103388) for dictionary of data fields in the input data file.

Output (results) from programming code written to summarize red-imported fire ant (RIFA) abundance from monitoring along transects at custom 2017 GRTS draw sites within select monitoring areas (see SOP 6 in ServCat reference 103385 for methods) of FWS Legacy Regions 2 and 3. Areas monitored included Balcones Canyonlands (TX) and Hagerman (TX) NWRs. The spreadsheet labeled as SOP 6 Metrics displays the different estimates in different worksheets. Each worksheet can be used for additional analysis.

Output from programming code written to summarize 2018 monarch butterfly abundance from monitoring data acquired using a modified Pollard walk at custom 2017 GRTS draw sites within select monitoring areas (see SOP 2 in ServCat reference 103367 for methods) of FWS Legacy Regions 2 and 3. Areas monitored included Balcones Canyonlands (TX), Hagerman (TX), Washita (OK), Neal Smith (IA) NWRs and several locations near the town of Lamoni, Iowa and northern Missouri. Input data file is named 'FWS_2018_MM_SOP2_for_SAS.csv' and is stored in ServCat reference 136485. See SM 5 (ServCat reference 103388) for dictionary of data fields in the input data file.

Output from programming code written to summarize data describing 2017 MCSP Trial monitoring sites acquired using a SOP 1 (see ServCat reference 103364) of FWS Legacy Regions 2 and 3. 2017 monitoring sites were selected using a custom GRTS draw conducted by USGS, within monitoring areas associated with select NWRS stations. Areas monitored included Balcones Canyonlands (TX), Hagerman (TX), Washita (OK), Neal Smith (IA), Necedah (WI) NWRs and several locations near the town of Lamoni, Iowa and private lands in northern Missouri.

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Output from programming code written to summarize monarch butterfly abundance from monitoring data acquired using a modified Pollard walk at custom 2017 GRTS draw sites within select monitoring areas (see SOP 2 in ServCat reference 103367 for methods) of FWS Legacy Regions 2 and 3. Areas monitored included Balcones Canyonlands (TX), Hagerman (TX), Washita (OK), Neal Smith (IA), Necedah (WI) NWRs and several locations near the town of Lamoni, Iowa and private lands in northern Missouri.

Parameter estimates for the generalized H2 model (SAS output).

Full report, commentary, additional materials, and example SAS output

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analyze the current population survey (cps) annual social and economic supplement (asec) with r the annual march cps-asec has been supplying the statistics for the census bureau's report on income, poverty, and health insurance coverage since 1948. wow. the us census bureau and the bureau of labor statistics ( bls) tag-team on this one. until the american community survey (acs) hit the scene in the early aughts (2000s), the current population survey had the largest sample size of all the annual general demographic data sets outside of the decennial census - about two hundred thousand respondents. this provides enough sample to conduct state- and a few large metro area-level analyses. your sample size will vanish if you start investigating subgroups b y state - consider pooling multiple years. county-level is a no-no. despite the american community survey's larger size, the cps-asec contains many more variables related to employment, sources of income, and insurance - and can be trended back to harry truman's presidency. aside from questions specifically asked about an annual experience (like income), many of the questions in this march data set should be t reated as point-in-time statistics. cps-asec generalizes to the united states non-institutional, non-active duty military population. the national bureau of economic research (nber) provides sas, spss, and stata importation scripts to create a rectangular file (rectangular data means only person-level records; household- and family-level information gets attached to each person). to import these files into r, the parse.SAScii function uses nber's sas code to determine how to import the fixed-width file, then RSQLite to put everything into a schnazzy database. you can try reading through the nber march 2012 sas importation code yourself, but it's a bit of a proc freak show. this new github repository contains three scripts: 2005-2012 asec - download all microdata.R down load the fixed-width file containing household, family, and person records import by separating this file into three tables, then merge 'em together at the person-level download the fixed-width file containing the person-level replicate weights merge the rectangular person-level file with the replicate weights, then store it in a sql database create a new variable - one - in the data table 2012 asec - analysis examples.R connect to the sql database created by the 'download all microdata' progr am create the complex sample survey object, using the replicate weights perform a boatload of analysis examples replicate census estimates - 2011.R connect to the sql database created by the 'download all microdata' program create the complex sample survey object, using the replicate weights match the sas output shown in the png file below 2011 asec replicate weight sas output.png statistic and standard error generated from the replicate-weighted example sas script contained in this census-provided person replicate weights usage instructions document. click here to view these three scripts for more detail about the current population survey - annual social and economic supplement (cps-asec), visit: the census bureau's current population survey page the bureau of labor statistics' current population survey page the current population survey's wikipedia article notes: interviews are conducted in march about experiences during the previous year. the file labeled 2012 includes information (income, work experience, health insurance) pertaining to 2011. when you use the current populat ion survey to talk about america, subract a year from the data file name. as of the 2010 file (the interview focusing on america during 2009), the cps-asec contains exciting new medical out-of-pocket spending variables most useful for supplemental (medical spending-adjusted) poverty research. confidential to sas, spss, stata, sudaan users: why are you still rubbing two sticks together after we've invented the butane lighter? time to transition to r. :D

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