scPerturb Single-Cell Perturbation Data: ATAC files
- zenodo.org
- data.niaid.nih.gov
zipUpdated Sep 9, 2022
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EmailClick to copy linkLink copiedCiteStefan Peidli; Stefan Peidli; Tessa D. Green; Tessa D. Green; Ciyue Shen; Ciyue Shen; Torsten Gross; Joseph Min; Joseph Min; Jake P. Taylor-King; Jake P. Taylor-King; Debora S. Marks; Debora S. Marks; Augustin Luna; Augustin Luna; Nils Blüthgen; Nils Blüthgen; Chris Sander; Chris Sander; Torsten Gross (2022). scPerturb Single-Cell Perturbation Data: ATAC files [Dataset]. http://doi.org/10.5281/zenodo.7058382zipAvailable download formatsUnique identifierhttps://doi.org/10.5281/zenodo.7058382Dataset updatedSep 9, 2022AuthorsStefan Peidli; Stefan Peidli; Tessa D. Green; Tessa D. Green; Ciyue Shen; Ciyue Shen; Torsten Gross; Joseph Min; Joseph Min; Jake P. Taylor-King; Jake P. Taylor-King; Debora S. Marks; Debora S. Marks; Augustin Luna; Augustin Luna; Nils Blüthgen; Nils Blüthgen; Chris Sander; Chris Sander; Torsten GrossLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescriptionSecondary upload of datasets on scPerturb.org
.zip files for ATAC-seq datasets
scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files
- zenodo.org
binUpdated Aug 26, 2024ShareFacebookTwitterEmailClick to copy linkLink copiedCiteStefan Peidli; Stefan Peidli; Tessa D. Green; Tessa D. Green; Ciyue Shen; Ciyue Shen; Torsten Gross; Joseph Min; Joseph Min; Samuele Garda; Bo Yuan; Linus Schumacher; Linus Schumacher; Jake P. Taylor-King; Jake P. Taylor-King; Debora S. Marks; Debora S. Marks; Augustin Luna; Augustin Luna; Nils Blüthgen; Nils Blüthgen; Chris Sander; Chris Sander; Torsten Gross; Samuele Garda; Bo Yuan (2024). scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files [Dataset]. http://doi.org/10.5281/zenodo.13350497binAvailable download formatsUnique identifierhttps://doi.org/10.5281/zenodo.13350497Dataset updatedAug 26, 2024AuthorsStefan Peidli; Stefan Peidli; Tessa D. Green; Tessa D. Green; Ciyue Shen; Ciyue Shen; Torsten Gross; Joseph Min; Joseph Min; Samuele Garda; Bo Yuan; Linus Schumacher; Linus Schumacher; Jake P. Taylor-King; Jake P. Taylor-King; Debora S. Marks; Debora S. Marks; Augustin Luna; Augustin Luna; Nils Blüthgen; Nils Blüthgen; Chris Sander; Chris Sander; Torsten Gross; Samuele Garda; Bo YuanLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescriptionCollection of h5ad files for RNA and protein single-cell perturbation datasets on scPerturb.org.
For the associated publication, see https://www.nature.com/articles/s41592-023-02144-y.
H5ad files were created using scanpy 1.9.1, using gzip compression.
- Z
scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files
- data.niaid.nih.gov
Updated Dec 8, 2022ShareFacebookTwitterEmailClick to copy linkLink copiedCiteSander, Chris (2022). scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_7041848Dataset updatedDec 8, 2022Dataset provided byMin, Joseph
Luna, Augustin
Gross, Torsten
Green, Tessa D.
Taylor-King, Jake P.
Marks, Debora S.
Peidli, Stefan
Shen, Ciyue
Sander, Chris
Blüthgen, NilsLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescriptionSecondary upload of datasets on scPerturb.org
h5ad files for RNA and protein datasets, created using scanpy 1.9.1
- f
sciPlex dataset
- figshare.com
hdfUpdated Nov 30, 2023ShareFacebookTwitterEmailClick to copy linkLink copiedCiteDominik Klein (2023). sciPlex dataset [Dataset]. http://doi.org/10.6084/m9.figshare.24681285.v1hdfAvailable download formatsUnique identifierhttps://doi.org/10.6084/m9.figshare.24681285.v1Dataset updatedNov 30, 2023Dataset provided byfigshareAuthorsDominik KleinLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescriptionTranscriptomes of 650000 A549, K562, and mCF7 cells exposed to 188 compounds. sci-Plex was used to screen three well-characterized human cancer cell lines, A549 (lung adenocarcinoma), K562 (chronic myelogenous leukemia), and MCF7 (mammary adenocarcinoma)exposed to 188 compounds, profiling ~650,000 single-cell transcriptomes across ~5000 independent samples in one experiment. References: Publication: https://doi.org/10.1126/science.aax6234 \ Obtained from scperturb: http://projects.sanderlab.org/scperturb/
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FacebookTwitterEmailAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
Secondary upload of datasets on scPerturb.org
.zip files for ATAC-seq datasets