12 datasets found
  1. d

    Data from: Identifying Critical Life Stage Transitions for Biological...

    • catalog.data.gov
    • cloud.csiss.gmu.edu
    • +3more
    Updated Apr 21, 2025
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    Agricultural Research Service (2025). Data from: Identifying Critical Life Stage Transitions for Biological Control of Long-lived Perennial Vincetoxicum Species [Dataset]. https://catalog.data.gov/dataset/data-from-identifying-critical-life-stage-transitions-for-biological-control-of-long-lived-41b5d
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    Dataset updated
    Apr 21, 2025
    Dataset provided by
    Agricultural Research Service
    Description

    This dataset includes data on 25 transitions of a matrix demographic model of the invasive species Vincetoxicum nigrum (L.) Moench (black swallow-wort or black dog-strangling vine) and Vincetoxicum rossicum (Kleopow) Barb. (pale swallow-wort or dog-strangling vine) (Apocynaceae, subfamily Asclepiadoideae), two invasive perennial vines in the northeastern U.S.A. and southeastern Canada. The matrix model was developed for projecting population growth rates as a result of changes to lower-level vital rates from biological control although the model is generalizable to any control tactic. Transitions occurred among the five life stages of seeds, seedlings, vegetative juveniles (defined as being in at least their second season of growth), small flowering plants (having 1–2 stems), and large flowering plants (having 3 or more stems). Transition values were calculated using deterministic equations and data from 20 lower-level vital rates collected from 2009-2012 from two open field and two forest understory populations of V. rossicum (43°51’N, 76°17’W; 42°48'N, 76°40'W) and two open field populations of V. nigrum (41°46’N, 73°44’W; 41°18’N, 73°58’W) in New York State. Sites varied in plant densities, soil depth, and light levels (forest populations). Detailed descriptions of vital rate data collection may be found in: Milbrath et al. 2017. Northeastern Naturalist 24(1):37-53. Five replicate sets of transition data obtained from five separate spatial regions of a particular infestation were produced for each of the six populations. Note: Added new excel file of vital rate data on 12/7/2018. Resources in this dataset:Resource Title: Matrix model transition data for Vincetoxicum species. File Name: Matrix_model_transition_data.csvResource Description: This data set includes data on 25 transitions of a matrix demographic model of two invasive Vincetoxicum species from six field and forest populations in New York State.Resource Title: Variable definitions. File Name: Matrix_model_metadata.csvResource Description: Definitions of variables including equations for each transition and definitions of the lower-level vital rates in the equationsResource Title: Vital Rate definitions. File Name: Vital_Rate.csvResource Description: Vital Rate definitions of lower-level vital rates used in transition equations - to be substituted into the Data Dictionary for full definition of each transition equation.Resource Title: Data Dictionary. File Name: Matrix_Model_transition_data_DD.csvResource Description: See Vital Rate resource for definitions of lower-level vital rates used in transition equations where noted.Resource Title: Matrix model vital rate data for Vincetoxicum species. File Name: Matrix_model_vital rate_data.csvResource Description: This data set includes data on 20 lower-level vital rates used in the calculation of transitions of a matrix demographic model of two invasive Vincetoxicum species in New York State as well as definitions of the vital rates. (File added on 12/7/2018)Resource Software Recommended: Microsoft Excel,url: https://office.microsoft.com/excel/

  2. n

    Demographic study of a tropical epiphytic orchid with stochastic simulations...

    • data.niaid.nih.gov
    • datadryad.org
    • +1more
    zip
    Updated Nov 14, 2022
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    Haydee Borrero; Ramona Oviedo-Prieto; Julio C. Alvarez; Tamara Ticktin; Mario Cisneros; Hong Liu (2022). Demographic study of a tropical epiphytic orchid with stochastic simulations of hurricanes, herbivory, episodic recruitment, and logging [Dataset]. http://doi.org/10.5061/dryad.vhhmgqnxd
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    zipAvailable download formats
    Dataset updated
    Nov 14, 2022
    Dataset provided by
    Florida International University
    University of Hawaiʻi at Mānoa
    The Institute of Ecology and Systematics, National Herbarium of Cuba "Onaney Muñiz"
    Authors
    Haydee Borrero; Ramona Oviedo-Prieto; Julio C. Alvarez; Tamara Ticktin; Mario Cisneros; Hong Liu
    License

    https://spdx.org/licenses/CC0-1.0.htmlhttps://spdx.org/licenses/CC0-1.0.html

    Description

    In a time of global change, having an understanding of the nature of biotic and abiotic factors that drive a species’ range may be the sharpest tool in the arsenal of conservation and management of threatened species. However, such information is lacking for most tropical and epiphytic species due to the complexity of life history, the roles of stochastic events, and the diversity of habitat across the span of a distribution. In this study, we conducted repeated censuses across the core and peripheral range of Trichocentrum undulatum, a threatened orchid that is found throughout the island of Cuba (species core range) and southern Florida (the northern peripheral range). We used demographic matrix modeling as well as stochastic simulations to investigate the impacts of herbivory, hurricanes, and logging (in Cuba) on projected population growth rates (? and ?s) among sites. Methods Field methods Censuses took place between 2013 and 2021. The longest census period was that of the Peripheral population with a total of nine years (2013–2021). All four populations in Cuba used in demographic modeling that were censused more than once: Core 1 site (2016–2019, four years), Core 2 site (2018–2019, two years), Core 3 (2016 and 2018 two years), and Core 4 (2018–2019, two years) (Appendix S1: Table S1). In November 2017, Hurricane Irma hit parts of Cuba and southern Florida, impacting the Peripheral population. The Core 5 population (censused on 2016 and 2018) was small (N=17) with low survival on the second census due to logging. Three additional populations in Cuba were visited only once, Core 6, Core 7, and Core 8 (Table 1). Sites with one census or with a small sample size (Core 5) were not included in the life history and matrix model analyses of this paper due to the lack of population transition information, but they were included in the analysis on the correlation between herbivory and fruit rate, as well as the use of mortality observations from logging for modeling. All Cuban sites were located between Western and Central Cuba, spanning four provinces: Mayabeque (Core 1), Pinar del Rio (Core 2 and Core 6), Matanzas (Core 3 and Core 5), and Sancti Spiritus (Core 4, Core 7, Core 8). At each population of T. undulatum presented in this study, individuals were studied within ~1-km strips where T. undulatum occurrence was deemed representative of the site, mostly occurring along informal forest trails. Once an individual of T. undulatum was located, all trees within a 5-m radius were searched for additional individuals. Since tagging was not permitted, we used a combination of information to track individual plants for the repeated censuses. These include the host species, height of the orchid, DBH of the host tree, and hand-drawn maps. Individual plants were also marked by GPS at the Everglades Peripheral site. If a host tree was found bearing more than one T. undulatum, then we systematically recorded the orchids in order from the lowest to highest as well as used the previous years’ observations in future censuses for individualized notes and size records. We recorded plant size and reproductive variables during each census including: the number of leaves, length of the longest leaf (cm), number of inflorescence stalks, number of flowers, and the number of mature fruits. We also noted any presence of herbivory, such as signs of being bored by M. miamensis, and whether an inflorescence was partially or completely affected by the fly, and whether there was other herbivory, such as D. boisduvalii on leaves. We used logistic regression analysis to examine the effects of year (at the Peripheral site) and sites (all sites) on the presence or absence of inflorescence herbivory at all the sites. Cross tabulation and chi-square analysis were done to examine the associations between whether a plant was able to fruit and the presence of floral herbivory by M. miamensis. The herbivory was scored as either complete or partial. During the orchid population scouting expeditions, we came across a small population in the Matanzas province (Core 5, within 10 km of the Core 3 site) and recorded the demographic information. Although the sampled population was small (N = 17), we were able to observe logging impacts at the site and recorded logging-associated mortality on the subsequent return to the site. Matrix modeling Definition of size-stage classes To assess the life stage transitions and population structures for each plant for each population’s census period we first defined the stage classes for the species. The categorization for each plant’s stage class depended on both its size and reproductive capabilities, a method deemed appropriate for plants (Lefkovitch 1965, Cochran and Ellner 1992). A size index score was calculated for each plant by taking the total number of observed leaves and adding the length of the longest leaf, an indication of accumulated biomass (Borrero et al. 2016). The smallest plant size that attempted to produce an inflorescence is considered the minimum size for an adult plant. Plants were classified by stage based on their size index and flowering capacity as the following: (1) seedlings (or new recruits), i.e., new and small plants with a size index score of less than 6, (2) juveniles, i.e., plants with a size index score of less than 15 with no observed history of flowering, (3) adults, plants with size index scores of 15 or greater. Adult plants of this size or larger are capable of flowering but may not produce an inflorescence in a given year. The orchid’s population matrix models were constructed based on these stages. In general, orchid seedlings are notoriously difficult to observe and easily overlooked in the field due to the small size of protocorms. A newly found juvenile on a subsequent site visit (not the first year) may therefore be considered having previously been a seedling in the preceding year. In this study, we use the discovered “seedlings” as indicatory of recruitment for the populations. Adult plants are able to shrink or transition into the smaller juvenile stage class, but a juvenile cannot shrink to the seedling stage. Matrix elements and population vital rates calculations Annual transition probabilities for every stage class were calculated. A total of 16 site- and year-specific matrices were constructed. When seedling or juvenile sample sizes were < 9, the transitions were estimated using the nearest year or site matrix elements as a proxy. Due to the length of the study and variety of vegetation types with a generally large population size at each site, transition substitutions were made with the average stage transition from all years at the site as priors. If the sample size of the averaged stage was still too small, the averaged transition from a different population located at the same vegetation type was used. We avoided using transition values from populations found in different vegetation types to conserve potential environmental differences. A total of 20% (27/135) of the matrix elements were estimated in this fashion, the majority being seedling stage transitions (19/27) and noted in the Appendices alongside population size (Appendix S1: Table S1). The fertility element transitions from reproductive adults to seedlings were calculated as the number of seedlings produced (and that survived to the census) per adult plant. Deterministic modeling analysis We used integral projection models (IPM) to project the long-term population growth rates for each time period and population. The finite population growth rate (?), stochastic long-term growth rate (?s), and the elasticity were projected for each matrices using R Popbio Package 2.4.4 (Stubben and Milligan 2007, Caswell 2001). The elasticity matrices were summarized by placing each element into one of three categories: fecundity (transition from reproductive adults to seedling stage), growth (all transitions to new and more advanced stage, excluding the fecundity), and stasis (plants that transitioned into the same or a less advanced stage on subsequent census) (Liu et al. 2005). Life table response experiments (LTREs) were conducted to identify the stage transitions that had the greatest effects on observed differences in population growth between select sites and years (i.e., pre-post hurricane impact and site comparisons of same vegetation type). Due to the frequent disturbances that epiphytes in general experience as well as our species’ distribution in hurricane-prone areas, we ran transient dynamic models that assume that the populations censused were not at stable stage distributions (Stott et al. 2011). We calculated three indices for short-term transient dynamics to capture the variation during a 15-year transition period: reactivity, maximum amplification, and amplified inertia. Reactivity measures a population’s growth in a single measured timestep relative to the stable-stage growth, during the simulated transition period. Maximum amplification and amplified inertia are the maximum of future population density and the maximum long-term population density, respectively, relative to a stable-stage population that began at the same initial density (Stott et al. 2011). For these analyses, we used a mean matrix for Core 1, Core 2 Core 3, and Core 4 sites and the population structure of their last census. For the Peripheral site, we averaged the last three matrices post-hurricane disturbance and used the most-recent population structure. We standardized the indices across sites with the assumption of initial population density equal to 1 (Stott et al. 2011). Analysis was done using R Popdemo version 1.3-0 (Stott et al. 2012b). Stochastic simulation We created matrices to simulate the effects of episodic recruitment, hurricane impacts, herbivory, and logging (Appendix S1: Table S2). The Peripheral population is the longest-running site with nine years of censuses (eight

  3. Years taken for the world population to grow by one billion 1803-2088

    • statista.com
    Updated Aug 9, 2024
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    Statista (2022). Years taken for the world population to grow by one billion 1803-2088 [Dataset]. https://www.statista.com/statistics/1291648/time-taken-for-global-pop-grow-billion/
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    Dataset updated
    Aug 9, 2024
    Dataset authored and provided by
    Statistahttp://statista.com/
    Time period covered
    1803 - 2015
    Area covered
    World
    Description

    Throughout most of human history, global population growth was very low; between 10,000BCE and 1700CE, the average annual increase was just 0.04 percent. Therefore, it took several thousand years for the global population to reach one billion people, doing so in 1803. However, this period marked the beginning of a global phenomenon known as the demographic transition, from which point population growth skyrocketed. With the introduction of modern medicines (especially vaccination), as well as improvements in water sanitation, food supply, and infrastructure, child mortality fell drastically and life expectancy increased, causing the population to grow. This process is linked to economic and technological development, and did not take place concurrently across the globe; it mostly began in Europe and other industrialized regions in the 19thcentury, before spreading across Asia and Latin America in the 20th century. As the most populous societies in the world are found in Asia, the demographic transition in this region coincided with the fastest period of global population growth. Today, Sub-Saharan Africa is the region at the earliest stage of this transition. As population growth slows across the other continents, with the populations of the Americas, Asia, and Europe expected to be in decline by the 2070s, Africa's population is expected to grow by three billion people by the end of the 21st century.

  4. w

    Sahel Women Empowerment and Demographic Dividend Initiative 2018 - Burkina...

    • microdata.worldbank.org
    • catalog.ihsn.org
    Updated Jun 6, 2024
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    Harounan Kazianga (2024). Sahel Women Empowerment and Demographic Dividend Initiative 2018 - Burkina Faso [Dataset]. https://microdata.worldbank.org/index.php/catalog/6255
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    Dataset updated
    Jun 6, 2024
    Dataset provided by
    Omer Combary
    Harounan Kazianga
    Time period covered
    2018
    Area covered
    Burkina Faso
    Description

    Abstract

    The Sahel Women Empowerment and Demographic Dividend (P150080) project in Burkina Faso focuses on advancing women's empowerment to spur demographic transition and mitigate gender disparities. This project seeks to empower young women by promoting entrepreneurship through business skills training and grants, and by enhancing access to reproductive health information and contraception, thereby aiming to lower fertility rates.

    The World Bank Africa Gender Innovation Lab, along with its partners, is conducting detailed impact evaluations of the SWEDD program’s key initiatives to gauge their effects on child marriage, fertility, and the empowerment of adolescent girls and young women.

    This data represents the first round of data collection (baseline) for the impact evaluation and include a household and community level surveys. The household level sample comprises 9857 households, 70,169 individuals and 9382 adolescent girls and young wives aged 24 living in the Boucle du Mouhoun and the East regions of Burkina Faso. The community level sample includes 175 villages.

    The insights derived from this survey could help policymakers develop strategies to: - Reduce fertility and child marriage by enhancing access to contraceptives and broadening reproductive health education. - Promote women’s empowerment by increasing their participation in economic activities

    This data is valuable for planners who focus on improving living standards, particularly for women. The Ministry of Women, National Solidarity, Family, and Humanitarian Action of Burkina Faso, along with District Authorities, Research Institutions, NGOs, and the general public, stand to benefit from this survey data.

    Geographic coverage

    Burkina Faso, Regions of Boucle du Mouhoun and East

    Analysis unit

    The unit of analysis is adolescent girls for the adolescent survey and households for the household survey.

    Kind of data

    Sample survey data [ssd]

    Sampling procedure

    We randomly selected 200 villages from the 11 provinces in the two regions of the Boucle du Mouhoun and the East. The 200 villages were selected proportionally, based on the formula (Np/N)*200, where Np represents the number of eligible villages in the province and N the total number of eligible villages. 25 villages were later dropped because of lack of safety.

    A census was first administered in each village to identify eligible girls and young wives, as well as households with these eligible individuals. All households with at least one eligible person then constituted the universe from which the survey sample was drawn. In total 9857 households and 9382 girls and young wives were sampled. A village-level questionnaire was also administered.

    The objective of the baseline survey was to build a comprehensive dataset, which would serve as a reference point for the entire sample, before treatment and control assignment and program implementation.

    Mode of data collection

    Computer Assisted Personal Interview [capi]

    Research instrument

    The data consists of responses from households to questions pertaining to: 1. List of household members 2. Education of household members 3. Occupations of household members 4. Characteristics of housing and durable goods 5. Food security 6. Household head's aspirations, as well as those of a boy aged 12 to 24 7. Opinions on women's empowerment and gender equality

    The questionnaire administrated to girls contains the following sections: 1. Education 2. Marriage and children 3. Aspirations 4. Health and family planning 5. Knowledge of HIV/AIDS 6. Women's empowerment 7. Gender-based violence 8. Income-generating activities 9. Savings and credit 10. Personal relationships and social networks 11. Committee members and community participation

    The questionnaire administered at the village-level contains the following sections: 1. Social norms (marriage norms) 2. Ethnic and religious compositions 3. Economic infrastructures (markets and roads) 4. Social services a. Health b. Education

    The household questionnaire was administered to the head of the household or to an authorized person capable of answering questions about all individuals in the household. The adolescent questionnaire was administered to each eligible pre-selected individual within the household. Considering the modules of the adolescent questionnaire, it was only administered by female enumerators. The village-level questionnaire was administered to a group of three to five village leaders with enough knowledge of the village. The enumerators were instructed to include women in this group whenever possible. The questionnaires were written in French, translated into the local languages, and programmed on tablets in French using the CAPI program.

    Cleaning operations

    Data was anonymized through decoding and local suppression.

  5. f

    Overall distribution of demographic factors and the distribution of purchase...

    • plos.figshare.com
    xls
    Updated Jun 14, 2023
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    Maijaliisa Erkkola; Satu M. Kinnunen; Henna R. Vepsäläinen; Jelena M. Meinilä; Liisa Uusitalo; Hanna Konttinen; Hannu Saarijärvi; Mikael Fogelholm; Jaakko Nevalainen (2023). Overall distribution of demographic factors and the distribution of purchase profiles by demographic factors (n = 29 437). [Dataset]. http://doi.org/10.1371/journal.pstr.0000015.t002
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    xlsAvailable download formats
    Dataset updated
    Jun 14, 2023
    Dataset provided by
    PLOS Sustainability and Transformation
    Authors
    Maijaliisa Erkkola; Satu M. Kinnunen; Henna R. Vepsäläinen; Jelena M. Meinilä; Liisa Uusitalo; Hanna Konttinen; Hannu Saarijärvi; Mikael Fogelholm; Jaakko Nevalainen
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Overall distribution of demographic factors and the distribution of purchase profiles by demographic factors (n = 29 437).

  6. Data from: Demographic stimulation of the obligate understorey herb, Panax...

    • zenodo.org
    • search.dataone.org
    • +1more
    bin
    Updated May 30, 2022
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    Jennifer L. Chandler; James B. McGraw; Jennifer L. Chandler; James B. McGraw (2022). Data from: Demographic stimulation of the obligate understorey herb, Panax quinquefolius L., in response to natural forest canopy disturbances [Dataset]. http://doi.org/10.5061/dryad.562bg
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    binAvailable download formats
    Dataset updated
    May 30, 2022
    Dataset provided by
    Zenodohttp://zenodo.org/
    Authors
    Jennifer L. Chandler; James B. McGraw; Jennifer L. Chandler; James B. McGraw
    License

    CC0 1.0 Universal Public Domain Dedicationhttps://creativecommons.org/publicdomain/zero/1.0/
    License information was derived automatically

    Description

    1.Natural and anthropogenic forest canopy disturbances significantly alter forest dynamics and lead to multi-dimensional shifts in the forest understorey. An understorey plant's ability to exploit alterations to the light environment caused by canopy disturbance leads to changes in population dynamics. The purpose of this work was to determine if population growth of a species adapted to low light increases in response to additional light inputs caused by canopy disturbance, or alternatively, declines due to long-term selection under low light conditions. 2.To address this question, we quantified the demographic response of an understorey herb to three contrasting forest canopy disturbances (ice storms, tent caterpillar defoliation and lightning strikes) that encompass a broad range of disturbance severity. We used a model shade-adapted understorey species, Panax quinquefolius, to parameterize stage-based matrix models. Asymptotic growth rates, stochastic growth rates and simulations of transient dynamics were used to quantify the population-level response to canopy disturbance. Life table response experiments were used to partition the underlying controls over differences in population growth rates. 3.Population growth rates at all three disturbed sites increased in the transition period immediately after the canopy disturbance relative to the transition period prior to disturbance. Stochastic population models revealed that growth rates increased significantly in simulations that included disturbance matrices relative to those simulations that excluded disturbance. Additionally, transient models indicated that population size (n) was larger for all three populations when the respective disturbance matrix was included in the model. 4.Synthesis Obligate shade species are most likely to be pre-adapted to take advantage of canopy gaps and light influx to a degree, and this pre-adaptation may be due to long-term selection under dynamic old growth forest canopies. We propose a model whereby population performance is represented by a parabolic curve where performance is maximized under intermediate levels of canopy disturbance. This study provides new evidence to aid our understanding of the population-level response of understorey herbs to disturbances whose frequency and intensity are predicted to increase as global climates continue to shift.

  7. a

    COVID-19 Trends in Each Country-Copy

    • hub.arcgis.com
    • open-data-pittsylvania.hub.arcgis.com
    • +1more
    Updated Jun 4, 2020
    + more versions
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    United Nations Population Fund (2020). COVID-19 Trends in Each Country-Copy [Dataset]. https://hub.arcgis.com/maps/1c4a4134d2de4e8cb3b4e4814ba6cb81
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    Dataset updated
    Jun 4, 2020
    Dataset authored and provided by
    United Nations Population Fund
    Area covered
    Description

    COVID-19 Trends MethodologyOur goal is to analyze and present daily updates in the form of recent trends within countries, states, or counties during the COVID-19 global pandemic. The data we are analyzing is taken directly from the Johns Hopkins University Coronavirus COVID-19 Global Cases Dashboard, though we expect to be one day behind the dashboard’s live feeds to allow for quality assurance of the data.Revisions added on 4/23/2020 are highlighted.Revisions added on 4/30/2020 are highlighted.Discussion of our assertion of an abundance of caution in assigning trends in rural counties added 5/7/2020. Correction on 6/1/2020Methodology update on 6/2/2020: This sets the length of the tail of new cases to 6 to a maximum of 14 days, rather than 21 days as determined by the last 1/3 of cases. This was done to align trends and criteria for them with U.S. CDC guidance. The impact is areas transition into Controlled trend sooner for not bearing the burden of new case 15-21 days earlier.Reasons for undertaking this work:The popular online maps and dashboards show counts of confirmed cases, deaths, and recoveries by country or administrative sub-region. Comparing the counts of one country to another can only provide a basis for comparison during the initial stages of the outbreak when counts were low and the number of local outbreaks in each country was low. By late March 2020, countries with small populations were being left out of the mainstream news because it was not easy to recognize they had high per capita rates of cases (Switzerland, Luxembourg, Iceland, etc.). Additionally, comparing countries that have had confirmed COVID-19 cases for high numbers of days to countries where the outbreak occurred recently is also a poor basis for comparison.The graphs of confirmed cases and daily increases in cases were fit into a standard size rectangle, though the Y-axis for one country had a maximum value of 50, and for another country 100,000, which potentially misled people interpreting the slope of the curve. Such misleading circumstances affected comparing large population countries to small population counties or countries with low numbers of cases to China which had a large count of cases in the early part of the outbreak. These challenges for interpreting and comparing these graphs represent work each reader must do based on their experience and ability. Thus, we felt it would be a service to attempt to automate the thought process experts would use when visually analyzing these graphs, particularly the most recent tail of the graph, and provide readers with an a resulting synthesis to characterize the state of the pandemic in that country, state, or county.The lack of reliable data for confirmed recoveries and therefore active cases. Merely subtracting deaths from total cases to arrive at this figure progressively loses accuracy after two weeks. The reason is 81% of cases recover after experiencing mild symptoms in 10 to 14 days. Severe cases are 14% and last 15-30 days (based on average days with symptoms of 11 when admitted to hospital plus 12 days median stay, and plus of one week to include a full range of severely affected people who recover). Critical cases are 5% and last 31-56 days. Sources:U.S. CDC. April 3, 2020 Interim Clinical Guidance for Management of Patients with Confirmed Coronavirus Disease (COVID-19). Accessed online. Initial older guidance was also obtained online. Additionally, many people who recover may not be tested, and many who are, may not be tracked due to privacy laws. Thus, the formula used to compute an estimate of active cases is: Active Cases = 100% of new cases in past 14 days + 19% from past 15-30 days + 5% from past 31-56 days - total deaths.We’ve never been inside a pandemic with the ability to learn of new cases as they are confirmed anywhere in the world. After reviewing epidemiological and pandemic scientific literature, three needs arose. We need to specify which portions of the pandemic lifecycle this map cover. The World Health Organization (WHO) specifies six phases. The source data for this map begins just after the beginning of Phase 5: human to human spread and encompasses Phase 6: pandemic phase. Phase six is only characterized in terms of pre- and post-peak. However, these two phases are after-the-fact analyses and cannot ascertained during the event. Instead, we describe (below) a series of five trends for Phase 6 of the COVID-19 pandemic.Choosing terms to describe the five trends was informed by the scientific literature, particularly the use of epidemic, which signifies uncontrolled spread. The five trends are: Emergent, Spreading, Epidemic, Controlled, and End Stage. Not every locale will experience all five, but all will experience at least three: emergent, controlled, and end stage.This layer presents the current trends for the COVID-19 pandemic by country (or appropriate level). There are five trends:Emergent: Early stages of outbreak. Spreading: Early stages and depending on an administrative area’s capacity, this may represent a manageable rate of spread. Epidemic: Uncontrolled spread. Controlled: Very low levels of new casesEnd Stage: No New cases These trends can be applied at several levels of administration: Local: Ex., City, District or County – a.k.a. Admin level 2State: Ex., State or Province – a.k.a. Admin level 1National: Country – a.k.a. Admin level 0Recommend that at least 100,000 persons be represented by a unit; granted this may not be possible, and then the case rate per 100,000 will become more important.Key Concepts and Basis for Methodology: 10 Total Cases minimum threshold: Empirically, there must be enough cases to constitute an outbreak. Ideally, this would be 5.0 per 100,000, but not every area has a population of 100,000 or more. Ten, or fewer, cases are also relatively less difficult to track and trace to sources. 21 Days of Cases minimum threshold: Empirically based on COVID-19 and would need to be adjusted for any other event. 21 days is also the minimum threshold for analyzing the “tail” of the new cases curve, providing seven cases as the basis for a likely trend (note that 21 days in the tail is preferred). This is the minimum needed to encompass the onset and duration of a normal case (5-7 days plus 10-14 days). Specifically, a median of 5.1 days incubation time, and 11.2 days for 97.5% of cases to incubate. This is also driven by pressure to understand trends and could easily be adjusted to 28 days. Source used as basis:Stephen A. Lauer, MS, PhD *; Kyra H. Grantz, BA *; Qifang Bi, MHS; Forrest K. Jones, MPH; Qulu Zheng, MHS; Hannah R. Meredith, PhD; Andrew S. Azman, PhD; Nicholas G. Reich, PhD; Justin Lessler, PhD. 2020. The Incubation Period of Coronavirus Disease 2019 (COVID-19) From Publicly Reported Confirmed Cases: Estimation and Application. Annals of Internal Medicine DOI: 10.7326/M20-0504.New Cases per Day (NCD) = Measures the daily spread of COVID-19. This is the basis for all rates. Back-casting revisions: In the Johns Hopkins’ data, the structure is to provide the cumulative number of cases per day, which presumes an ever-increasing sequence of numbers, e.g., 0,0,1,1,2,5,7,7,7, etc. However, revisions do occur and would look like, 0,0,1,1,2,5,7,7,6. To accommodate this, we revised the lists to eliminate decreases, which make this list look like, 0,0,1,1,2,5,6,6,6.Reporting Interval: In the early weeks, Johns Hopkins' data provided reporting every day regardless of change. In late April, this changed allowing for days to be skipped if no new data was available. The day was still included, but the value of total cases was set to Null. The processing therefore was updated to include tracking of the spacing between intervals with valid values.100 News Cases in a day as a spike threshold: Empirically, this is based on COVID-19’s rate of spread, or r0 of ~2.5, which indicates each case will infect between two and three other people. There is a point at which each administrative area’s capacity will not have the resources to trace and account for all contacts of each patient. Thus, this is an indicator of uncontrolled or epidemic trend. Spiking activity in combination with the rate of new cases is the basis for determining whether an area has a spreading or epidemic trend (see below). Source used as basis:World Health Organization (WHO). 16-24 Feb 2020. Report of the WHO-China Joint Mission on Coronavirus Disease 2019 (COVID-19). Obtained online.Mean of Recent Tail of NCD = Empirical, and a COVID-19-specific basis for establishing a recent trend. The recent mean of NCD is taken from the most recent fourteen days. A minimum of 21 days of cases is required for analysis but cannot be considered reliable. Thus, a preference of 42 days of cases ensures much higher reliability. This analysis is not explanatory and thus, merely represents a likely trend. The tail is analyzed for the following:Most recent 2 days: In terms of likelihood, this does not mean much, but can indicate a reason for hope and a basis to share positive change that is not yet a trend. There are two worthwhile indicators:Last 2 days count of new cases is less than any in either the past five or 14 days. Past 2 days has only one or fewer new cases – this is an extremely positive outcome if the rate of testing has continued at the same rate as the previous 5 days or 14 days. Most recent 5 days: In terms of likelihood, this is more meaningful, as it does represent at short-term trend. There are five worthwhile indicators:Past five days is greater than past 2 days and past 14 days indicates the potential of the past 2 days being an aberration. Past five days is greater than past 14 days and less than past 2 days indicates slight positive trend, but likely still within peak trend time frame.Past five days is less than the past 14 days. This means a downward trend. This would be an

  8. d

    Data from: Demographic consequences of greater clonal than sexual...

    • search.dataone.org
    • data.niaid.nih.gov
    • +2more
    Updated Apr 1, 2025
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    Chia-Hua Lin; Maria N. Miriti; Karen Goodell (2025). Demographic consequences of greater clonal than sexual reproduction in Dicentra canadensis [Dataset]. http://doi.org/10.5061/dryad.j21v2
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    Dataset updated
    Apr 1, 2025
    Dataset provided by
    Dryad Digital Repository
    Authors
    Chia-Hua Lin; Maria N. Miriti; Karen Goodell
    Time period covered
    Apr 20, 2017
    Description

    Clonality is a widespread life history trait in flowering plants that may be essential for population persistence, especially in environments where sexual reproduction is unpredictable. Frequent clonal reproduction, however, could hinder sexual reproduction by spatially aggregating ramets that compete with seedlings and reduce inter-genet pollination. Nevertheless, the role of clonality in relation to variable sexual reproduction in population dynamics is often overlooked. We combined population matrix models and pollination experiments to compare the demographic contributions of clonal and sexual reproduction in three Dicentra canadensis populations, one in a well-forested landscape and two in isolated forest remnants. We constructed stage-based transition matrices from 3 years of census data to evaluate annual population growth rates, λ. We used loop analysis to evaluate the relative contribution of different reproductive pathways to λ. Despite strong temporal and spatial variation in...

  9. B

    Data from: Biocontrol insect impacts population growth of its target plant...

    • borealisdata.ca
    • open.library.ubc.ca
    Updated May 19, 2021
    + more versions
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    Haley A. Catton; Robert G. Lalonde; Yvonne M. Buckley; Rosemarie A. De Clerck-Floate (2021). Data from: Biocontrol insect impacts population growth of its target plant species but not an incidentally used nontarget [Dataset]. http://doi.org/10.5683/SP2/0BAZJM
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    CroissantCroissant is a format for machine-learning datasets. Learn more about this at mlcommons.org/croissant.
    Dataset updated
    May 19, 2021
    Dataset provided by
    Borealis
    Authors
    Haley A. Catton; Robert G. Lalonde; Yvonne M. Buckley; Rosemarie A. De Clerck-Floate
    License

    CC0 1.0 Universal Public Domain Dedicationhttps://creativecommons.org/publicdomain/zero/1.0/
    License information was derived automatically

    Area covered
    Canada, Alberta
    Description

    AbstractUnderstanding the impact of herbivory on plant populations is a fundamental goal of ecology. Damage to individual plants can be visually striking and affect the fates of individuals, but these impacts do not necessarily translate into population-level differences in vital rates (survival, growth, or fecundity) or population growth rates. In biological control of weeds, quantitative assessments of population-level impacts of released agents on both target invasive plants and native, nontarget plants are needed to inform evaluations of the benefits and risks of releasing agents into new regions. Here we present a 3-yr experimental demographic field study using the European root-feeding biocontrol weevil, Mogulones crucifer, first released in Canada in 1997 to control the invasive weed Cynoglossum officinale (Boraginaceae). Mogulones crucifer is an effective “search and destroy” agent in Canada, but sporadically feeds, oviposits, and develops on native nontarget Boraginaceae. We investigated the population-level impacts of this biocontrol insect on its target weed and a native nontarget plant, Hackelia micrantha (Boraginaceae), by releasing large numbers of weevils into naturally occurring patches of H. micrantha growing isolated from or interspersed with C. officinale. We followed the fates of individual plants on release and nonrelease (control) sites for two transition years, developed matrix models to project population growth rates (λ) for each plant species, and examined the contributions from differences in vital rates to changes in λ using life table response experiments (LTRE). In contrast to studies of the insect–plant interaction in its native range, as a biocontrol agent, M. crucifer increased mortality of C. officinale rosettes in the year immediately following release, depressing the weed's λ to below the population replacement level. However, λ for H. micrantha was never depressed below the replacement level, and any differences between release and nonrelease sites in the nontarget could not be explained by significant contributions from vital rates in the LTRE. This study is the first to simultaneously and experimentally examine target and nontarget population-level impacts of a weed biocontrol insect in the field, and supports the theoretical prediction that plant life history characteristics and uneven herbivore host preferences can interact to produce differences in population-level impacts between target and nontarget plant species. Usage notesCatton et al Demography Stacked April 12 2015Demography data for Cynoglossum officinale and Hackelia micrantha on Mogulones crucifer release and nonrelease sites used in the Catton et al. (2016) publication in Ecosphere.

  10. f

    Hazard ratios and corresponding 95% confidence interval from the multi-state...

    • plos.figshare.com
    xls
    Updated Feb 26, 2024
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    Michael S. Oduro; Samuel Iddi; Louis Asiedu; Gershim Asiki; Damazo T. Kadengye (2024). Hazard ratios and corresponding 95% confidence interval from the multi-state model with covariates. [Dataset]. http://doi.org/10.1371/journal.pone.0272684.t004
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    xlsAvailable download formats
    Dataset updated
    Feb 26, 2024
    Dataset provided by
    PLOS ONE
    Authors
    Michael S. Oduro; Samuel Iddi; Louis Asiedu; Gershim Asiki; Damazo T. Kadengye
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    State 1: normal, State 2: Marginally stunted, State 3: Moderately stunted, State 4: Severely stunted.

  11. f

    Baseline transition intensity estimates and corresponding 95% confidence...

    • plos.figshare.com
    xls
    Updated Feb 26, 2024
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    Michael S. Oduro; Samuel Iddi; Louis Asiedu; Gershim Asiki; Damazo T. Kadengye (2024). Baseline transition intensity estimates and corresponding 95% confidence interval from the multi-state model with and without covariates. [Dataset]. http://doi.org/10.1371/journal.pone.0272684.t003
    Explore at:
    xlsAvailable download formats
    Dataset updated
    Feb 26, 2024
    Dataset provided by
    PLOS ONE
    Authors
    Michael S. Oduro; Samuel Iddi; Louis Asiedu; Gershim Asiki; Damazo T. Kadengye
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    State 1: normal, State 2: Marginally stunted, State 3: Moderately stunted, State 4: Severely stunted.

  12. f

    Descriptive statistics at entry into the study (N = 676). N is the number of...

    • figshare.com
    • plos.figshare.com
    xls
    Updated Feb 26, 2024
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    Michael S. Oduro; Samuel Iddi; Louis Asiedu; Gershim Asiki; Damazo T. Kadengye (2024). Descriptive statistics at entry into the study (N = 676). N is the number of children. [Dataset]. http://doi.org/10.1371/journal.pone.0272684.t001
    Explore at:
    xlsAvailable download formats
    Dataset updated
    Feb 26, 2024
    Dataset provided by
    PLOS ONE
    Authors
    Michael S. Oduro; Samuel Iddi; Louis Asiedu; Gershim Asiki; Damazo T. Kadengye
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Descriptive statistics at entry into the study (N = 676). N is the number of children.

  13. Not seeing a result you expected?
    Learn how you can add new datasets to our index.

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Agricultural Research Service (2025). Data from: Identifying Critical Life Stage Transitions for Biological Control of Long-lived Perennial Vincetoxicum Species [Dataset]. https://catalog.data.gov/dataset/data-from-identifying-critical-life-stage-transitions-for-biological-control-of-long-lived-41b5d

Data from: Identifying Critical Life Stage Transitions for Biological Control of Long-lived Perennial Vincetoxicum Species

Related Article
Explore at:
Dataset updated
Apr 21, 2025
Dataset provided by
Agricultural Research Service
Description

This dataset includes data on 25 transitions of a matrix demographic model of the invasive species Vincetoxicum nigrum (L.) Moench (black swallow-wort or black dog-strangling vine) and Vincetoxicum rossicum (Kleopow) Barb. (pale swallow-wort or dog-strangling vine) (Apocynaceae, subfamily Asclepiadoideae), two invasive perennial vines in the northeastern U.S.A. and southeastern Canada. The matrix model was developed for projecting population growth rates as a result of changes to lower-level vital rates from biological control although the model is generalizable to any control tactic. Transitions occurred among the five life stages of seeds, seedlings, vegetative juveniles (defined as being in at least their second season of growth), small flowering plants (having 1–2 stems), and large flowering plants (having 3 or more stems). Transition values were calculated using deterministic equations and data from 20 lower-level vital rates collected from 2009-2012 from two open field and two forest understory populations of V. rossicum (43°51’N, 76°17’W; 42°48'N, 76°40'W) and two open field populations of V. nigrum (41°46’N, 73°44’W; 41°18’N, 73°58’W) in New York State. Sites varied in plant densities, soil depth, and light levels (forest populations). Detailed descriptions of vital rate data collection may be found in: Milbrath et al. 2017. Northeastern Naturalist 24(1):37-53. Five replicate sets of transition data obtained from five separate spatial regions of a particular infestation were produced for each of the six populations. Note: Added new excel file of vital rate data on 12/7/2018. Resources in this dataset:Resource Title: Matrix model transition data for Vincetoxicum species. File Name: Matrix_model_transition_data.csvResource Description: This data set includes data on 25 transitions of a matrix demographic model of two invasive Vincetoxicum species from six field and forest populations in New York State.Resource Title: Variable definitions. File Name: Matrix_model_metadata.csvResource Description: Definitions of variables including equations for each transition and definitions of the lower-level vital rates in the equationsResource Title: Vital Rate definitions. File Name: Vital_Rate.csvResource Description: Vital Rate definitions of lower-level vital rates used in transition equations - to be substituted into the Data Dictionary for full definition of each transition equation.Resource Title: Data Dictionary. File Name: Matrix_Model_transition_data_DD.csvResource Description: See Vital Rate resource for definitions of lower-level vital rates used in transition equations where noted.Resource Title: Matrix model vital rate data for Vincetoxicum species. File Name: Matrix_model_vital rate_data.csvResource Description: This data set includes data on 20 lower-level vital rates used in the calculation of transitions of a matrix demographic model of two invasive Vincetoxicum species in New York State as well as definitions of the vital rates. (File added on 12/7/2018)Resource Software Recommended: Microsoft Excel,url: https://office.microsoft.com/excel/

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