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The table reports for each species the instability indices of the ND6, ND2...
- plos.figshare.com
xlsUpdated Jun 5, 2023
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EmailClick to copy linkLink copiedCiteFelix C. Mark; Magnus Lucassen; Anneli Strobel; Esteban Barrera-Oro; Nils Koschnick; Lorenzo Zane; Tomaso Patarnello; Hans O. Pörtner; Chiara Papetti (2023). The table reports for each species the instability indices of the ND6, ND2 and COI proteins computed using Expasy's ProtParam (http://us.expasy.org/tools/protparam.html) prediction server [64]. [Dataset]. http://doi.org/10.1371/journal.pone.0031860.t002xlsAvailable download formatsUnique identifierhttps://doi.org/10.1371/journal.pone.0031860.t002Dataset updatedJun 5, 2023Dataset provided byPLOS ONEAuthorsFelix C. Mark; Magnus Lucassen; Anneli Strobel; Esteban Barrera-Oro; Nils Koschnick; Lorenzo Zane; Tomaso Patarnello; Hans O. Pörtner; Chiara PapettiLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescription*protein classified as unstable (threshold: 40).
Genomically predicted laminarinases.
- plos.figshare.com
xlsUpdated May 31, 2023ShareFacebookTwitterEmailClick to copy linkLink copiedCiteRonald M. Weiner; Larry E. Taylor II; Bernard Henrissat; Loren Hauser; Miriam Land; Pedro M. Coutinho; Corinne Rancurel; Elizabeth H. Saunders; Atkinson G. Longmire; Haitao Zhang; Edward A. Bayer; Harry J. Gilbert; Frank Larimer; Igor B. Zhulin; Nathan A. Ekborg; Raphael Lamed; Paul M. Richardson; Ilya Borovok; Steven Hutcheson (2023). Genomically predicted laminarinases. [Dataset]. http://doi.org/10.1371/journal.pgen.1000087.t003xlsAvailable download formatsUnique identifierhttps://doi.org/10.1371/journal.pgen.1000087.t003Dataset updatedMay 31, 2023AuthorsRonald M. Weiner; Larry E. Taylor II; Bernard Henrissat; Loren Hauser; Miriam Land; Pedro M. Coutinho; Corinne Rancurel; Elizabeth H. Saunders; Atkinson G. Longmire; Haitao Zhang; Edward A. Bayer; Harry J. Gilbert; Frank Larimer; Igor B. Zhulin; Nathan A. Ekborg; Raphael Lamed; Paul M. Richardson; Ilya Borovok; Steven HutchesonLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescription1Gene number having the prefix “Sde”, for Saccharophagus degradans as assigned in Jun 15, 2005 genome assembly. (http://genome.ornl.gov/microbial/mdeg/15jun05/mdeg.html).2Predictions of function and module determination by CAZy ModO at AFMB-CNRS.3Module abbreviations: CAD, cadherin-like domain; CBM, carbohydrate binding module; COG3488, thiol-oxidoreductase like domain; EPR, glutamic acid-proline rich region; FN3, fibronectin type 3 module; GH, glycoside hydrolase; LPB, lipobox signature sequence; PSL, polyserine linker; TMR, transmembrane region; TSP3, thrombospondin type 3 repeat.4MW and amino acid count calculated using the protParam tool at http://us.expasy.org/tools/ based on DOE/JGI gene model amino acid sequence translations including any predicted signal peptide.
Amino acid composition of ND6.
- plos.figshare.com
xlsUpdated Jun 1, 2023ShareFacebookTwitterEmailClick to copy linkLink copiedCiteFelix C. Mark; Magnus Lucassen; Anneli Strobel; Esteban Barrera-Oro; Nils Koschnick; Lorenzo Zane; Tomaso Patarnello; Hans O. Pörtner; Chiara Papetti (2023). Amino acid composition of ND6. [Dataset]. http://doi.org/10.1371/journal.pone.0031860.t003xlsAvailable download formatsUnique identifierhttps://doi.org/10.1371/journal.pone.0031860.t003Dataset updatedJun 1, 2023AuthorsFelix C. Mark; Magnus Lucassen; Anneli Strobel; Esteban Barrera-Oro; Nils Koschnick; Lorenzo Zane; Tomaso Patarnello; Hans O. Pörtner; Chiara PapettiLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescriptionThe table reports for each species the amino acid composition of the ND6 protein computed using Expasy's ProtParam (http://us.expasy.org/tools/protparam.html) prediction server [64].
Examples of carbohydrases and CBM proteins detected in S. degradans...
- plos.figshare.com
xlsUpdated May 31, 2023ShareFacebookTwitterEmailClick to copy linkLink copiedCiteRonald M. Weiner; Larry E. Taylor II; Bernard Henrissat; Loren Hauser; Miriam Land; Pedro M. Coutinho; Corinne Rancurel; Elizabeth H. Saunders; Atkinson G. Longmire; Haitao Zhang; Edward A. Bayer; Harry J. Gilbert; Frank Larimer; Igor B. Zhulin; Nathan A. Ekborg; Raphael Lamed; Paul M. Richardson; Ilya Borovok; Steven Hutcheson (2023). Examples of carbohydrases and CBM proteins detected in S. degradans supernatants by mass spectrometry. [Dataset]. http://doi.org/10.1371/journal.pgen.1000087.t006xlsAvailable download formatsUnique identifierhttps://doi.org/10.1371/journal.pgen.1000087.t006Dataset updatedMay 31, 2023AuthorsRonald M. Weiner; Larry E. Taylor II; Bernard Henrissat; Loren Hauser; Miriam Land; Pedro M. Coutinho; Corinne Rancurel; Elizabeth H. Saunders; Atkinson G. Longmire; Haitao Zhang; Edward A. Bayer; Harry J. Gilbert; Frank Larimer; Igor B. Zhulin; Nathan A. Ekborg; Raphael Lamed; Paul M. Richardson; Ilya Borovok; Steven HutchesonLicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescription1Protein was detected in supernatants of cultures grown in the following growth substrates: Avicel (∼70% crystalline cellulose), xylan (Birchwood glucuronoarabinoxylan).2Predictions of function and module determination utilizing the routines used for the updates of the CAZy database (www.cazy.org/CAZY/).3Module abbreviations: CBM, carbohydrate binding module; UNK, unknown function; PSL, polyserine linker; LPB, lipobox signature sequence; GH, glycosyl hydrolase; EPR, glutamate-proline rich region.4Gene number having the prefix “Sde”, for Saccharophagus degradans as assigned in Jun 15, 2005 genome assembly5MW and amino acid count calculated using the protParam tool at http://us.expasy.org/tools/ based on DOE/JGI gene model amino acid sequence translations including any predicted signal peptide.
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PIRSF
- ebi.ac.uk
Updated Apr 7, 2020ShareFacebookTwitterEmailClick to copy linkLink copiedCite(2020). PIRSF [Dataset]. https://www.ebi.ac.uk/interpro/Dataset updatedApr 7, 2020LicenseAttribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automaticallyDescriptionPIRSF protein classification system is a network with multiple levels of sequence diversity from superfamilies to subfamilies that reflects the evolutionary relationship of full-length proteins and domains. PIRSF is based at the Protein Information Resource, Georgetown University Medical Centre, Washington DC, US.
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FacebookTwitterEmailThe table reports for each species the instability indices of the ND6, ND2 and COI proteins computed using Expasy's ProtParam (http://us.expasy.org/tools/protparam.html) prediction server [64].
Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically
*protein classified as unstable (threshold: 40).