2 datasets found
  1. Z

    Sample Multi-Modal BIDS dataset (v2.1)

    • data.niaid.nih.gov
    • zenodo.org
    Updated Dec 18, 2021
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    Tourbier, Sebastien (2021). Sample Multi-Modal BIDS dataset (v2.1) [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_3708962
    Explore at:
    Dataset updated
    Dec 18, 2021
    Dataset provided by
    Tourbier, Sebastien
    Hagmann, Patric
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    This a sample BIDS dataset created for continous integration of the Connectome Mapper 3.

    This dataset was acquired at the Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne, Switzerland, using a 3T Siemens Prisma MRI scanner.

    It adopts the sub-/ses- structure and contains one T1w anatomical MRI (MPRAGE), one diffusion MRI (DSI) , and one resting-state functional MRI as well as additional Freesurfer derivatives.

    It is distributed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. (See https://creativecommons.org/licenses/by/4.0/ for more details)

    Changes

    Version 2.1

    Fix issues with the resampling of the DWI and rfMRI scans with Slicer. They were regenerated in version 2.1 with mri_convert to better handle the 4th dimension.

    For the sake of the size of the dataset, only 100 frames in the fMRI recording has been kept and the sourcedata/ folder has been dropped but can be easily be retrieved in the previous 2.0 version (https://zenodo.org/record/5788803#.Yb2-giYo8bV).

    Version 2.0

    For testing purposes, scans found in the root sub-01 directory have been downsampled to 2x2x2 mm3 (MPRAGE), and to 3x3x3 mm3 (DSI and rfMRI) with the ResampleScalarVolume module of Slicer 4.6.2. A copy of the output produced in the terminal by Slicer has been created in the code/ directory.

    Original data have been placed in sourcedata/ in concordance to BIDS.

  2. Sample Multi-Modal BIDS dataset

    • zenodo.org
    application/gzip
    Updated Dec 18, 2021
    Share
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    Sebastien Tourbier; Sebastien Tourbier; Patric Hagmann; Patric Hagmann (2021). Sample Multi-Modal BIDS dataset [Dataset]. http://doi.org/10.5281/zenodo.3708963
    Explore at:
    application/gzipAvailable download formats
    Dataset updated
    Dec 18, 2021
    Dataset provided by
    Zenodohttp://zenodo.org/
    Authors
    Sebastien Tourbier; Sebastien Tourbier; Patric Hagmann; Patric Hagmann
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    This a sample BIDS dataset created for continous integration of the Connectome Mapper 3.

    This dataset was acquired at the Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne, Switzerland, using a 3T Siemens Prisma MRI scanner.

    It adopts the sub-/ses- structure and contains one T1w anatomical MRI (MPRAGE), one diffusion MRI (DSI) , and one resting-state functional MRI as well as additional Freesurfer derivatives.

    It is distributed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. (See https://creativecommons.org/licenses/by/4.0/ for more details)

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Share
FacebookFacebook
TwitterTwitter
Email
Click to copy link
Link copied
Close
Cite
Tourbier, Sebastien (2021). Sample Multi-Modal BIDS dataset (v2.1) [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_3708962

Sample Multi-Modal BIDS dataset (v2.1)

Explore at:
Dataset updated
Dec 18, 2021
Dataset provided by
Tourbier, Sebastien
Hagmann, Patric
License

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Description

This a sample BIDS dataset created for continous integration of the Connectome Mapper 3.

This dataset was acquired at the Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne, Switzerland, using a 3T Siemens Prisma MRI scanner.

It adopts the sub-/ses- structure and contains one T1w anatomical MRI (MPRAGE), one diffusion MRI (DSI) , and one resting-state functional MRI as well as additional Freesurfer derivatives.

It is distributed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. (See https://creativecommons.org/licenses/by/4.0/ for more details)

Changes

Version 2.1

Fix issues with the resampling of the DWI and rfMRI scans with Slicer. They were regenerated in version 2.1 with mri_convert to better handle the 4th dimension.

For the sake of the size of the dataset, only 100 frames in the fMRI recording has been kept and the sourcedata/ folder has been dropped but can be easily be retrieved in the previous 2.0 version (https://zenodo.org/record/5788803#.Yb2-giYo8bV).

Version 2.0

For testing purposes, scans found in the root sub-01 directory have been downsampled to 2x2x2 mm3 (MPRAGE), and to 3x3x3 mm3 (DSI and rfMRI) with the ResampleScalarVolume module of Slicer 4.6.2. A copy of the output produced in the terminal by Slicer has been created in the code/ directory.

Original data have been placed in sourcedata/ in concordance to BIDS.

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