88 datasets found
  1. Z

    VolPy: automated and scalable analysis pipelines for voltage imaging...

    • data-staging.niaid.nih.gov
    • data.niaid.nih.gov
    Updated Mar 10, 2021
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Cai, Changjia; Friedrich, Johannes; Singh, Amrita; Eybposh, M. Hossein; Pnevmatikakis, Eftychios A.; Xie, Michael E.; Abdelfattah, Ahmed S.; Adam, Yoav; Schreiter, Eric R.; Cohen, Adam E.; Podgorski, Kaspar; Giovannucci, Andrea (2021). VolPy: automated and scalable analysis pipelines for voltage imaging datasets [Dataset]. https://data-staging.niaid.nih.gov/resources?id=zenodo_4515767
    Explore at:
    Dataset updated
    Mar 10, 2021
    Dataset provided by
    Joint Department of Biomedical Engineering at University of North Carolina atChapel Hill and North Carolina State University, Chapel Hill, NC, USA
    Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
    Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
    Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA
    Flatiron Institute, Simons Foundation, New York, NY, USA
    Authors
    Cai, Changjia; Friedrich, Johannes; Singh, Amrita; Eybposh, M. Hossein; Pnevmatikakis, Eftychios A.; Xie, Michael E.; Abdelfattah, Ahmed S.; Adam, Yoav; Schreiter, Eric R.; Cohen, Adam E.; Podgorski, Kaspar; Giovannucci, Andrea
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Voltage imaging enables monitoring neural activity at sub-millisecond and sub-cellular scale, unlocking the study of subthreshold activity, synchrony, and network dynamics with unprecedented spatio-temporal resolution. However, high data rates (>800MB/s) and low signal-to-noise ratios create bottlenecks for analyzing such datasets. Here we present VolPy, an automated and scalable pipeline to pre-process voltage imaging datasets.VolPy features motion correction, memory mapping, automated segmentation,denoising and spike extraction, all built on a highly parallelizable, modular, and extensible framework optimized for memory and speed. To aid automated segmentation,we introduce a corpus of 24 manually annotated datasets from different preparations,brain areas and voltage indicators. We benchmark VolPy against ground truth segmentation, simulations and electrophysiology recordings, and we compare its performance with existing algorithms in detecting spikes. Our results indicate that VolPy’s performance in spike extraction and scalability are state-of-the-art.

    File names contain 'L1'(mouse cortex) or 'TEG'(zebrafish tegmental area) are from the following paper:

    Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, et al. Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.Science. 2019;365(6454):699–704. doi:10.1126/science.aav6416.

    File names contain 'HPC'(mouse hippocampus) are from the following paper:

    Adam Y, Kim JJ, Lou S, Zhao Y, Xie ME, Brinks D, et al. Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics.Nature. 2019;569(7756):413.

  2. f

    VolPy performance on segmentation.

    • figshare.com
    • datasetcatalog.nlm.nih.gov
    • +1more
    xls
    Updated Jun 11, 2023
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Changjia Cai; Johannes Friedrich; Amrita Singh; M. Hossein Eybposh; Eftychios A. Pnevmatikakis; Kaspar Podgorski; Andrea Giovannucci (2023). VolPy performance on segmentation. [Dataset]. http://doi.org/10.1371/journal.pcbi.1008806.t003
    Explore at:
    xlsAvailable download formats
    Dataset updated
    Jun 11, 2023
    Dataset provided by
    PLOS Computational Biology
    Authors
    Changjia Cai; Johannes Friedrich; Amrita Singh; M. Hossein Eybposh; Eftychios A. Pnevmatikakis; Kaspar Podgorski; Andrea Giovannucci
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    For each type of datasets, number of datasets, number of neurons, recall, precision, F1 score for training and validation computed by stratified cross-validation are provided.

  3. Properties of three heterogeneous types of datasets.

    • plos.figshare.com
    xls
    Updated Jun 11, 2023
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Changjia Cai; Johannes Friedrich; Amrita Singh; M. Hossein Eybposh; Eftychios A. Pnevmatikakis; Kaspar Podgorski; Andrea Giovannucci (2023). Properties of three heterogeneous types of datasets. [Dataset]. http://doi.org/10.1371/journal.pcbi.1008806.t001
    Explore at:
    xlsAvailable download formats
    Dataset updated
    Jun 11, 2023
    Dataset provided by
    PLOShttp://plos.org/
    Authors
    Changjia Cai; Johannes Friedrich; Amrita Singh; M. Hossein Eybposh; Eftychios A. Pnevmatikakis; Kaspar Podgorski; Andrea Giovannucci
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    For each type of dataset the name, organism, brain region, source, imaging rate, voltage indicator, and total number of neurons selected by the manual annotators in GT (consensus, (labeler 1, labeler 2, labeler 3)) are given.

  4. Data for generating figures.

    • plos.figshare.com
    xlsx
    Updated Jun 4, 2023
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Changjia Cai; Johannes Friedrich; Amrita Singh; M. Hossein Eybposh; Eftychios A. Pnevmatikakis; Kaspar Podgorski; Andrea Giovannucci (2023). Data for generating figures. [Dataset]. http://doi.org/10.1371/journal.pcbi.1008806.s001
    Explore at:
    xlsxAvailable download formats
    Dataset updated
    Jun 4, 2023
    Dataset provided by
    PLOShttp://plos.org/
    Authors
    Changjia Cai; Johannes Friedrich; Amrita Singh; M. Hossein Eybposh; Eftychios A. Pnevmatikakis; Kaspar Podgorski; Andrea Giovannucci
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    An excel file contains data for generating Figs 3B, 3C, 3D, 4C, 4D, 4E, 5B, 5D, 6A, 6B, 6C and 6D. (XLSX)

  5. VOLPE

    • data.nasa.gov
    application/rdfxml +5
    Updated Sep 20, 2019
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    (2019). VOLPE [Dataset]. https://data.nasa.gov/dataset/VOLPE/tzpu-6qr3
    Explore at:
    csv, application/rssxml, application/rdfxml, xml, tsv, jsonAvailable download formats
    Dataset updated
    Sep 20, 2019
    Description

    Measurements made off the San Diego, Californian coast in 1999.

  6. o

    Volpi Drive Cross Street Data in Stockton, CA

    • ownerly.com
    Updated Dec 5, 2021
    + more versions
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Ownerly (2021). Volpi Drive Cross Street Data in Stockton, CA [Dataset]. https://www.ownerly.com/ca/stockton/volpi-dr-home-details
    Explore at:
    Dataset updated
    Dec 5, 2021
    Dataset authored and provided by
    Ownerly
    Area covered
    Stockton, Volpi Drive, California
    Description

    This dataset provides information about the number of properties, residents, and average property values for Volpi Drive cross streets in Stockton, CA.

  7. o

    Volpe Road Cross Street Data in Plymouth Meeting, PA

    • ownerly.com
    Updated Dec 9, 2021
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Ownerly (2021). Volpe Road Cross Street Data in Plymouth Meeting, PA [Dataset]. https://www.ownerly.com/pa/plymouth-meeting/volpe-rd-home-details
    Explore at:
    Dataset updated
    Dec 9, 2021
    Dataset authored and provided by
    Ownerly
    Area covered
    Plymouth Meeting, Pennsylvania, Volpe Road
    Description

    This dataset provides information about the number of properties, residents, and average property values for Volpe Road cross streets in Plymouth Meeting, PA.

  8. T

    VOLPE National Performance Monitoring Research Data Set (NPMRDS) -...

    • agtransport.usda.gov
    csv, xlsx, xml
    Updated Apr 15, 2021
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Volpe National Transportation Systems Center (2021). VOLPE National Performance Monitoring Research Data Set (NPMRDS) - Destination to Origin [Dataset]. https://agtransport.usda.gov/w/yf7a-wzas/_variation_?cur=sETLWkS3GSW&from=root
    Explore at:
    csv, xlsx, xmlAvailable download formats
    Dataset updated
    Apr 15, 2021
    Dataset authored and provided by
    Volpe National Transportation Systems Center
    Description

    This dataset contains data on original and post-calibration mileposts, Traffic Message Channel location codes (TMC), Truck Travel Time Reliability Index, Travel Time Index (TTI), TMC mileage, and corridor identification segment for the destination to origin direction of the National Performance Monitoring Research Data Set (NPMRDS) network.

  9. i

    Grant Giving Statistics for Volpe Memorial Fund

    • instrumentl.com
    Updated Jul 7, 2021
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    (2021). Grant Giving Statistics for Volpe Memorial Fund [Dataset]. https://www.instrumentl.com/990-report/volpe-memorial-fund
    Explore at:
    Dataset updated
    Jul 7, 2021
    Variables measured
    Total Assets, Total Giving
    Description

    Financial overview and grant giving statistics of Volpe Memorial Fund

  10. VOLPE 7014

    • data.wu.ac.at
    • data.cityofnewyork.us
    csv, json, xml
    Updated Dec 4, 2017
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Department of Citywide Administrative Services (DCAS) (2017). VOLPE 7014 [Dataset]. https://data.wu.ac.at/schema/bronx_lehman_cuny_edu/dm00Mi1hNGFw
    Explore at:
    csv, json, xmlAvailable download formats
    Dataset updated
    Dec 4, 2017
    Description

    A Civil Service List consists of all candidates who passed an exam, ranked in score order. An established list is considered active for no less than one year and no more than four years from the date of establishment. For more information visit DCAS’ “Work for the City” webpage at: http://www.nyc.gov/html/dcas/html/work/work.shtml

  11. b

    Volpe

    • balanlogysupplement.shop
    • cardiobalancesupplement.shop
    Updated Nov 14, 2025
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Research Institution (2025). Volpe [Dataset]. https://balanlogysupplement.shop/
    Explore at:
    Dataset updated
    Nov 14, 2025
    Dataset authored and provided by
    Research Institution
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Volpe. (2004). Hypertension Surveys. High Blood Pressure & Cardiovascular Prevention. DOI: 10.2165/00151642-200411040-00001

  12. T

    Importance of Highways to U.S. Agriculture Report - Bridge Data

    • agtransport.usda.gov
    csv, xlsx, xml
    Updated Aug 2, 2021
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Volpe National Transportation Systems Center (2021). Importance of Highways to U.S. Agriculture Report - Bridge Data [Dataset]. https://agtransport.usda.gov/w/6m4r-v2ik/default?cur=3ozhhmQzq-W&from=LB_abT27_C4
    Explore at:
    xml, csv, xlsxAvailable download formats
    Dataset updated
    Aug 2, 2021
    Dataset authored and provided by
    Volpe National Transportation Systems Center
    Area covered
    United States
    Description

    This dataset contains data on bridge conditions and clearance for the study corridors in the Importance of Highways to U.S. Agriculture Report. The Volpe Center derived this study specific dataset from the Federal Highway Administration's (FHWA’s) National Bridge Inventory (NBI) data.

  13. Michelle Volpe-Kohler

    • clevelandfed.org
    Updated Mar 5, 2021
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Federal Reserve Bank of Cleveland (2021). Michelle Volpe-Kohler [Dataset]. https://www.clevelandfed.org/people/profiles/v/volpe-kohler-michelle
    Explore at:
    Dataset updated
    Mar 5, 2021
    Dataset authored and provided by
    Federal Reserve Bank of Clevelandhttps://www.clevelandfed.org/
    Description

    Michelle Volpe-Kohler is the senior manager of marketing and communications in the People Resources Department at the Federal Reserve Bank of Cleveland.

  14. h

    Volpe

    • heartfreedomsupplement.shop
    Updated Nov 22, 2025
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Research Institution (2025). Volpe [Dataset]. https://heartfreedomsupplement.shop/
    Explore at:
    Dataset updated
    Nov 22, 2025
    Dataset authored and provided by
    Research Institution
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Volpe. (2005). Head-to-Head Intervention Trials in Hypertension. High Blood Pressure & Cardiovascular Prevention. DOI: 10.2165/00151642-200512010-00001

  15. o

    Volpe Way Cross Street Data in Smyrna, DE

    • ownerly.com
    Updated Dec 9, 2021
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    Ownerly (2021). Volpe Way Cross Street Data in Smyrna, DE [Dataset]. https://www.ownerly.com/de/smyrna/volpe-way-home-details
    Explore at:
    Dataset updated
    Dec 9, 2021
    Dataset authored and provided by
    Ownerly
    Area covered
    Smyrna, Delaware, Volpe Way
    Description

    This dataset provides information about the number of properties, residents, and average property values for Volpe Way cross streets in Smyrna, DE.

  16. e

    Volpi Concerie Spa Export Import Data | Eximpedia

    • eximpedia.app
    Updated Sep 12, 2025
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    (2025). Volpi Concerie Spa Export Import Data | Eximpedia [Dataset]. https://www.eximpedia.app/companies/volpi-concerie-spa/74068295
    Explore at:
    Dataset updated
    Sep 12, 2025
    Description

    Volpi Concerie Spa Export Import Data. Follow the Eximpedia platform for HS code, importer-exporter records, and customs shipment details.

  17. Volpe Where Are You's YouTube Channel Statistics

    • vidiq.com
    + more versions
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    vidIQ, Volpe Where Are You's YouTube Channel Statistics [Dataset]. https://vidiq.com/youtube-stats/channel/UCcPVzEbEIv1GUl_c4owKuhg/
    Explore at:
    Dataset authored and provided by
    vidIQ
    Time period covered
    Nov 1, 2025 - Nov 26, 2025
    Area covered
    US
    Variables measured
    subscribers, video count, video views, engagement rate, upload frequency, estimated earnings
    Description

    Comprehensive YouTube channel statistics for Volpe Where Are You, featuring 982,000 subscribers and 145,817,442 total views. This dataset includes detailed performance metrics such as subscriber growth, video views, engagement rates, and estimated revenue. The channel operates in the Lifestyle category and is based in US. Track 385 videos with daily and monthly performance data, including view counts, subscriber changes, and earnings estimates. Analyze growth trends, engagement patterns, and compare performance against similar channels in the same category.

  18. VOLPE AIS Vessel Tracking | Live Position by MMSI: 319296600, IMO: 1072232

    • tradlinx.com
    Updated Nov 10, 2025
    + more versions
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    TRADLINX (2025). VOLPE AIS Vessel Tracking | Live Position by MMSI: 319296600, IMO: 1072232 [Dataset]. https://www.tradlinx.com/vessel-tracking/263554-VOLPE-MMSI-319296600-IMO-1072232
    Explore at:
    Dataset updated
    Nov 10, 2025
    Dataset authored and provided by
    TRADLINX
    Variables measured
    ETA, IMO, Flag, MMSI, Speed, Width, Course, Length, Draught, AIS Type, and 3 more
    Description

    Track the VOLPE in real-time with AIS data. TRADLINX provides live vessel position, speed, and course updates. Search by MMSI: 319296600, IMO: 1072232

  19. o

    Working Capital Fund, Volpe National Transportation Systems Cent

    • openomb.org
    Updated Oct 3, 2025
    + more versions
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    OpenOMB (2025). Working Capital Fund, Volpe National Transportation Systems Cent [Dataset]. https://openomb.org/file/11477596
    Explore at:
    Dataset updated
    Oct 3, 2025
    Dataset authored and provided by
    OpenOMB
    License

    CC0 1.0 Universal Public Domain Dedicationhttps://creativecommons.org/publicdomain/zero/1.0/
    License information was derived automatically

    Description

    Apportionment file 11477596 retrieved from OMB public records

  20. e

    Volpe Import Inc Export Import Data | Eximpedia

    • eximpedia.app
    Updated Oct 23, 2025
    Share
    FacebookFacebook
    TwitterTwitter
    Email
    Click to copy link
    Link copied
    Close
    Cite
    (2025). Volpe Import Inc Export Import Data | Eximpedia [Dataset]. https://www.eximpedia.app/companies/volpe-import-inc/59495675
    Explore at:
    Dataset updated
    Oct 23, 2025
    Description

    Volpe Import Inc Export Import Data. Follow the Eximpedia platform for HS code, importer-exporter records, and customs shipment details.

Share
FacebookFacebook
TwitterTwitter
Email
Click to copy link
Link copied
Close
Cite
Cai, Changjia; Friedrich, Johannes; Singh, Amrita; Eybposh, M. Hossein; Pnevmatikakis, Eftychios A.; Xie, Michael E.; Abdelfattah, Ahmed S.; Adam, Yoav; Schreiter, Eric R.; Cohen, Adam E.; Podgorski, Kaspar; Giovannucci, Andrea (2021). VolPy: automated and scalable analysis pipelines for voltage imaging datasets [Dataset]. https://data-staging.niaid.nih.gov/resources?id=zenodo_4515767

VolPy: automated and scalable analysis pipelines for voltage imaging datasets

Explore at:
Dataset updated
Mar 10, 2021
Dataset provided by
Joint Department of Biomedical Engineering at University of North Carolina atChapel Hill and North Carolina State University, Chapel Hill, NC, USA
Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA
Flatiron Institute, Simons Foundation, New York, NY, USA
Authors
Cai, Changjia; Friedrich, Johannes; Singh, Amrita; Eybposh, M. Hossein; Pnevmatikakis, Eftychios A.; Xie, Michael E.; Abdelfattah, Ahmed S.; Adam, Yoav; Schreiter, Eric R.; Cohen, Adam E.; Podgorski, Kaspar; Giovannucci, Andrea
License

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Description

Voltage imaging enables monitoring neural activity at sub-millisecond and sub-cellular scale, unlocking the study of subthreshold activity, synchrony, and network dynamics with unprecedented spatio-temporal resolution. However, high data rates (>800MB/s) and low signal-to-noise ratios create bottlenecks for analyzing such datasets. Here we present VolPy, an automated and scalable pipeline to pre-process voltage imaging datasets.VolPy features motion correction, memory mapping, automated segmentation,denoising and spike extraction, all built on a highly parallelizable, modular, and extensible framework optimized for memory and speed. To aid automated segmentation,we introduce a corpus of 24 manually annotated datasets from different preparations,brain areas and voltage indicators. We benchmark VolPy against ground truth segmentation, simulations and electrophysiology recordings, and we compare its performance with existing algorithms in detecting spikes. Our results indicate that VolPy’s performance in spike extraction and scalability are state-of-the-art.

File names contain 'L1'(mouse cortex) or 'TEG'(zebrafish tegmental area) are from the following paper:

Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, et al. Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.Science. 2019;365(6454):699–704. doi:10.1126/science.aav6416.

File names contain 'HPC'(mouse hippocampus) are from the following paper:

Adam Y, Kim JJ, Lou S, Zhao Y, Xie ME, Brinks D, et al. Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics.Nature. 2019;569(7756):413.

Search
Clear search
Close search
Google apps
Main menu