16 datasets found
  1. Z

    VolPy: automated and scalable analysis pipelines for voltage imaging...

    • data.niaid.nih.gov
    Updated Mar 10, 2021
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    Friedrich, Johannes (2021). VolPy: automated and scalable analysis pipelines for voltage imaging datasets [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_4515767
    Explore at:
    Dataset updated
    Mar 10, 2021
    Dataset provided by
    Xie, Michael E.
    Friedrich, Johannes
    Pnevmatikakis, Eftychios A.
    Giovannucci, Andrea
    Abdelfattah, Ahmed S.
    Singh, Amrita
    Cohen, Adam E.
    Cai, Changjia
    Podgorski, Kaspar
    Eybposh, M. Hossein
    Schreiter, Eric R.
    Adam, Yoav
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Voltage imaging enables monitoring neural activity at sub-millisecond and sub-cellular scale, unlocking the study of subthreshold activity, synchrony, and network dynamics with unprecedented spatio-temporal resolution. However, high data rates (>800MB/s) and low signal-to-noise ratios create bottlenecks for analyzing such datasets. Here we present VolPy, an automated and scalable pipeline to pre-process voltage imaging datasets.VolPy features motion correction, memory mapping, automated segmentation,denoising and spike extraction, all built on a highly parallelizable, modular, and extensible framework optimized for memory and speed. To aid automated segmentation,we introduce a corpus of 24 manually annotated datasets from different preparations,brain areas and voltage indicators. We benchmark VolPy against ground truth segmentation, simulations and electrophysiology recordings, and we compare its performance with existing algorithms in detecting spikes. Our results indicate that VolPy’s performance in spike extraction and scalability are state-of-the-art.

    File names contain 'L1'(mouse cortex) or 'TEG'(zebrafish tegmental area) are from the following paper:

    Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, et al. Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.Science. 2019;365(6454):699–704. doi:10.1126/science.aav6416.

    File names contain 'HPC'(mouse hippocampus) are from the following paper:

    Adam Y, Kim JJ, Lou S, Zhao Y, Xie ME, Brinks D, et al. Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics.Nature. 2019;569(7756):413.

  2. VolPy performance on segmentation.

    • plos.figshare.com
    xls
    Updated Jun 11, 2023
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    Changjia Cai; Johannes Friedrich; Amrita Singh; M. Hossein Eybposh; Eftychios A. Pnevmatikakis; Kaspar Podgorski; Andrea Giovannucci (2023). VolPy performance on segmentation. [Dataset]. http://doi.org/10.1371/journal.pcbi.1008806.t003
    Explore at:
    xlsAvailable download formats
    Dataset updated
    Jun 11, 2023
    Dataset provided by
    PLOShttp://plos.org/
    Authors
    Changjia Cai; Johannes Friedrich; Amrita Singh; M. Hossein Eybposh; Eftychios A. Pnevmatikakis; Kaspar Podgorski; Andrea Giovannucci
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    For each type of datasets, number of datasets, number of neurons, recall, precision, F1 score for training and validation computed by stratified cross-validation are provided.

  3. f

    Data for generating figures.

    • plos.figshare.com
    xlsx
    Updated Jun 4, 2023
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    Changjia Cai; Johannes Friedrich; Amrita Singh; M. Hossein Eybposh; Eftychios A. Pnevmatikakis; Kaspar Podgorski; Andrea Giovannucci (2023). Data for generating figures. [Dataset]. http://doi.org/10.1371/journal.pcbi.1008806.s001
    Explore at:
    xlsxAvailable download formats
    Dataset updated
    Jun 4, 2023
    Dataset provided by
    PLOS Computational Biology
    Authors
    Changjia Cai; Johannes Friedrich; Amrita Singh; M. Hossein Eybposh; Eftychios A. Pnevmatikakis; Kaspar Podgorski; Andrea Giovannucci
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    An excel file contains data for generating Figs 3B, 3C, 3D, 4C, 4D, 4E, 5B, 5D, 6A, 6B, 6C and 6D. (XLSX)

  4. Marine Litter Dataset

    • zenodo.org
    Updated Apr 18, 2024
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    Harry Heskin; Pedro Machado; Harry Heskin; Pedro Machado (2024). Marine Litter Dataset [Dataset]. http://doi.org/10.5281/zenodo.10993447
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    Dataset updated
    Apr 18, 2024
    Dataset provided by
    Zenodohttp://zenodo.org/
    Authors
    Harry Heskin; Pedro Machado; Harry Heskin; Pedro Machado
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Time period covered
    Apr 18, 2024
    Description

    An annotated marine litter dataset created by Emanuele Della Volpe to train object classification.

    The author was enquired but no response was given. The dataset looks to have been captured using drones.

    Containing 5 classes:

    • Bottles
    • Hardplastic
    • Softplastic
    • Polystyrene
    • Masks

    Suitable for YOLOv8 training. Other versions available through Roboflow.

    Link to Roboflow page:

    https://universe.roboflow.com/emanuele-della-volpe/marinelitter. Click or tap if you trust this link." href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Funiverse.roboflow.com%2Femanuele-della-volpe%2Fmarinelitter&data=05%7C02%7Cpedro.machado%40ntu.ac.uk%7C42fc834ee60b4c4d6d3c08dc5f260775%7C8acbc2c5c8ed42c78169ba438a0dbe2f%7C1%7C0%7C638489864134583252%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=YMGOuK3Ps3LnVlSxBH1epnz%2BM61zDbbWidRb6CuSKZs%3D&reserved=0" target="_blank" rel="noopener noreferrer">MarineLitter Dataset > Overview (roboflow.com)

  5. N

    VOLPE 7014

    • data.cityofnewyork.us
    • data.wu.ac.at
    application/rdfxml +5
    Updated Dec 4, 2017
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    Department of Citywide Administrative Services (DCAS) (2017). VOLPE 7014 [Dataset]. https://data.cityofnewyork.us/City-Government/VOLPE-7014/vm42-a4ap
    Explore at:
    csv, tsv, application/rssxml, json, application/rdfxml, xmlAvailable download formats
    Dataset updated
    Dec 4, 2017
    Authors
    Department of Citywide Administrative Services (DCAS)
    Description

    A Civil Service List consists of all candidates who passed an exam, ranked in score order. An established list is considered active for no less than one year and no more than four years from the date of establishment. For more information visit DCAS’ “Work for the City” webpage at: http://www.nyc.gov/html/dcas/html/work/work.shtml

  6. VOLPE

    • data.nasa.gov
    application/rdfxml +5
    Updated Sep 20, 2019
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    (2019). VOLPE [Dataset]. https://data.nasa.gov/dataset/VOLPE/tzpu-6qr3
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    csv, application/rssxml, application/rdfxml, xml, tsv, jsonAvailable download formats
    Dataset updated
    Sep 20, 2019
    Description

    Measurements made off the San Diego, Californian coast in 1999.

  7. e

    Eximpedia Export Import Trade

    • eximpedia.app
    Updated Jan 12, 2025
    + more versions
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    Seair Exim (2025). Eximpedia Export Import Trade [Dataset]. https://www.eximpedia.app/
    Explore at:
    .bin, .xml, .csv, .xlsAvailable download formats
    Dataset updated
    Jan 12, 2025
    Dataset provided by
    Eximpedia Export Import Trade Data
    Eximpedia PTE LTD
    Authors
    Seair Exim
    Area covered
    Saint Martin (French part), Anguilla, Bouvet Island, Tanzania, Ascension and Tristan da Cunha, Somalia, Thailand, Sao Tome and Principe, Argentina, Korea (Republic of)
    Description

    Volpi Tabacos Ltda Company Export Import Records. Follow the Eximpedia platform for HS code, importer-exporter records, and customs shipment details.

  8. i

    Grant Giving Statistics for Volpe Foundation

    • instrumentl.com
    Updated Mar 30, 2024
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    (2024). Grant Giving Statistics for Volpe Foundation [Dataset]. https://www.instrumentl.com/990-report/volpe-foundation
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    Dataset updated
    Mar 30, 2024
    Variables measured
    Total Assets, Total Giving, Average Grant Amount
    Description

    Financial overview and grant giving statistics of Volpe Foundation

  9. o

    069-4522 /X - Working Capital Fund, Volpe National Transportation Systems...

    • openomb.org
    + more versions
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    069-4522 /X - Working Capital Fund, Volpe National Transportation Systems Cent [Dataset]. https://openomb.org/file/11407607
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    Description

    Working Capital Fund, Volpe National Transportation Systems Cent account, Iteration 2, Fiscal year 2025

  10. i

    Grant Giving Statistics for Angelo V & Doris C Volpe Memorial Charitable...

    • instrumentl.com
    Updated Feb 22, 2022
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    (2022). Grant Giving Statistics for Angelo V & Doris C Volpe Memorial Charitable Trust 009064 [Dataset]. https://www.instrumentl.com/990-report/angelo-volpe-and-doris-volpe-memorial-charitabl
    Explore at:
    Dataset updated
    Feb 22, 2022
    Variables measured
    Total Assets, Total Giving, Average Grant Amount
    Description

    Financial overview and grant giving statistics of Angelo V & Doris C Volpe Memorial Charitable Trust 009064

  11. Frank volpe jr Import Company US

    • seair.co.in
    Updated Jun 11, 2017
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    Seair Exim (2017). Frank volpe jr Import Company US [Dataset]. https://www.seair.co.in
    Explore at:
    .bin, .xml, .csv, .xlsAvailable download formats
    Dataset updated
    Jun 11, 2017
    Dataset provided by
    Seair Exim Solutions
    Authors
    Seair Exim
    Area covered
    United States
    Description

    Subscribers can find out export and import data of 23 countries by HS code or product’s name. This demo is helpful for market analysis.

  12. c

    Distribuzione per paese del cognome Volpe

    • cognome.eu
    Updated Jul 3, 2025
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    The citation is currently not available for this dataset.
    Explore at:
    Dataset updated
    Jul 3, 2025
    Dataset authored and provided by
    Apellidos del Mundo
    Area covered
    Mozambico, Liberia, Eritrea, Perù, Costa Rica, Guatemala, Germania, Russia, Ungheria, Ecuador
    Variables measured
    Frequenza del cognome
    Description

    Scopri la distribuzione mondiale del cognome Volpe. Presente in 82 paesi con 50,480 persone registrate.

  13. n

    Ricardo La Volpe

    • wikipedia.tr-tr.nina.az
    Updated Jun 28, 2024
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    (2024). Ricardo La Volpe [Dataset]. https://www.wikipedia.tr-tr.nina.az/Ricardo_La_Volpe.html
    Explore at:
    Dataset updated
    Jun 28, 2024
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    Ricardo La Volpe d 6 şubat 1952 kaleci pozisyonunda görev yapmış Arjantinli millî futbolcu ve teknik direktör Ricardo La

  14. f

    Aktivnost riba za Cala di Volpe, Italy;

    • fishingpoints.app
    Updated Jul 1, 2025
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    Fishing Points Ltd. (2025). Aktivnost riba za Cala di Volpe, Italy; [Dataset]. https://fishingpoints.app/hr/forecasts/europe/italy/w/cala-di-volpe/
    Explore at:
    Dataset updated
    Jul 1, 2025
    Dataset authored and provided by
    Fishing Points Ltd.
    Time period covered
    Jul 1, 2025
    Area covered
    Cala di Volpe, Italija
    Variables measured
    Major vrijeme, Minor vrijeme, Središnja aktivnost riba
    Description

    Provjerite prognozu aktivnosti ribe u Cala di Volpe, Italy i pronađite najbolja vremena za ribolov na temelju plime i oseke, podataka sunca i mjeseca i drugih čimbenika.

  15. e

    WMS INSPIRE PLU volpi

    • data.europa.eu
    wms
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    WMS INSPIRE PLU volpi [Dataset]. https://data.europa.eu/data/datasets/38bdc59f-0306-4190-aba5-553ee6197014?locale=it
    Explore at:
    wmsAvailable download formats
    Description

    Ispirare le volpi PLU

  16. e

    Rifiuti di volpe

    • data.europa.eu
    wfs, wms
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    Rifiuti di volpe [Dataset]. https://data.europa.eu/data/datasets/42cf12ac-cf72-4797-93aa-4bec7db2a29d?locale=it
    Explore at:
    wfs, wmsAvailable download formats
    Description

    Rifiuti di volpe

  17. Not seeing a result you expected?
    Learn how you can add new datasets to our index.

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Friedrich, Johannes (2021). VolPy: automated and scalable analysis pipelines for voltage imaging datasets [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_4515767

VolPy: automated and scalable analysis pipelines for voltage imaging datasets

Explore at:
Dataset updated
Mar 10, 2021
Dataset provided by
Xie, Michael E.
Friedrich, Johannes
Pnevmatikakis, Eftychios A.
Giovannucci, Andrea
Abdelfattah, Ahmed S.
Singh, Amrita
Cohen, Adam E.
Cai, Changjia
Podgorski, Kaspar
Eybposh, M. Hossein
Schreiter, Eric R.
Adam, Yoav
License

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Description

Voltage imaging enables monitoring neural activity at sub-millisecond and sub-cellular scale, unlocking the study of subthreshold activity, synchrony, and network dynamics with unprecedented spatio-temporal resolution. However, high data rates (>800MB/s) and low signal-to-noise ratios create bottlenecks for analyzing such datasets. Here we present VolPy, an automated and scalable pipeline to pre-process voltage imaging datasets.VolPy features motion correction, memory mapping, automated segmentation,denoising and spike extraction, all built on a highly parallelizable, modular, and extensible framework optimized for memory and speed. To aid automated segmentation,we introduce a corpus of 24 manually annotated datasets from different preparations,brain areas and voltage indicators. We benchmark VolPy against ground truth segmentation, simulations and electrophysiology recordings, and we compare its performance with existing algorithms in detecting spikes. Our results indicate that VolPy’s performance in spike extraction and scalability are state-of-the-art.

File names contain 'L1'(mouse cortex) or 'TEG'(zebrafish tegmental area) are from the following paper:

Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, et al. Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.Science. 2019;365(6454):699–704. doi:10.1126/science.aav6416.

File names contain 'HPC'(mouse hippocampus) are from the following paper:

Adam Y, Kim JJ, Lou S, Zhao Y, Xie ME, Brinks D, et al. Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics.Nature. 2019;569(7756):413.

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