4 datasets found
  1. Z

    Tracking focal adhesions with TrackMate and Weka - tutorial dataset 2

    • data.niaid.nih.gov
    Updated Jul 17, 2024
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    Guillaume Jacquemet; Minh-Son-Phan; Jean-Yves Tinevez (2024). Tracking focal adhesions with TrackMate and Weka - tutorial dataset 2 [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_5978939
    Explore at:
    Dataset updated
    Jul 17, 2024
    Dataset provided by
    Institut Pasteur
    Authors
    Guillaume Jacquemet; Minh-Son-Phan; Jean-Yves Tinevez
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    This folder contains data used to illustrate the utility of Weka detector in TrackMate.

    • classifier.model: trained Weka classifier.
    • image data: human dermal microvascular blood endothelial cells expressing GFP-paxillin

    More detail on using these files can be found here: https://imagej.net/plugins/trackmate/trackmate-weka.

  2. Tracking focal adhesions with TrackMate and Weka - tutorial dataset 1

    • zenodo.org
    • data.niaid.nih.gov
    bin, png
    Updated Jul 18, 2024
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    Jean-Yves Tinevez; Jean-Yves Tinevez; Minh-Son-Phan; Minh-Son-Phan; Guillaume Jacquemet; Guillaume Jacquemet (2024). Tracking focal adhesions with TrackMate and Weka - tutorial dataset 1 [Dataset]. http://doi.org/10.5281/zenodo.5226842
    Explore at:
    bin, pngAvailable download formats
    Dataset updated
    Jul 18, 2024
    Dataset provided by
    Zenodohttp://zenodo.org/
    Authors
    Jean-Yves Tinevez; Jean-Yves Tinevez; Minh-Son-Phan; Minh-Son-Phan; Guillaume Jacquemet; Guillaume Jacquemet
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    This folder contains data used to illustrate the utility of Weka detector in TrackMate.

    - classifier.model: trained Weka classifier.
    - MDA231 paxillin DMSO 1 min.czi - MDA231 paxillin DMSO 1 min.czi #01_t1_t40_crop.tif: example image.

    More detail on using these files can be found here: https://imagej.net/plugins/trackmate/trackmate-weka.

  3. The performance measures of the prediction models developed based on...

    • plos.figshare.com
    xls
    Updated May 31, 2023
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    Sherry Bhalla; Harpreet Kaur; Rishemjit Kaur; Suresh Sharma; Gajendra P. S. Raghava (2023). The performance measures of the prediction models developed based on 37-protein-coding mRNA feature set (THCA-EL-PC) selected by FCBF-WEKA feature selection method on training and validation dataset by implementing various machine-learning algorithms. [Dataset]. http://doi.org/10.1371/journal.pone.0231629.t001
    Explore at:
    xlsAvailable download formats
    Dataset updated
    May 31, 2023
    Dataset provided by
    PLOShttp://plos.org/
    Authors
    Sherry Bhalla; Harpreet Kaur; Rishemjit Kaur; Suresh Sharma; Gajendra P. S. Raghava
    License

    Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
    License information was derived automatically

    Description

    The performance measures of the prediction models developed based on 37-protein-coding mRNA feature set (THCA-EL-PC) selected by FCBF-WEKA feature selection method on training and validation dataset by implementing various machine-learning algorithms.

  4. Market Basket Analysis

    • kaggle.com
    zip
    Updated Dec 9, 2021
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    Aslan Ahmedov (2021). Market Basket Analysis [Dataset]. https://www.kaggle.com/datasets/aslanahmedov/market-basket-analysis
    Explore at:
    zip(23875170 bytes)Available download formats
    Dataset updated
    Dec 9, 2021
    Authors
    Aslan Ahmedov
    Description

    Market Basket Analysis

    Market basket analysis with Apriori algorithm

    The retailer wants to target customers with suggestions on itemset that a customer is most likely to purchase .I was given dataset contains data of a retailer; the transaction data provides data around all the transactions that have happened over a period of time. Retailer will use result to grove in his industry and provide for customer suggestions on itemset, we be able increase customer engagement and improve customer experience and identify customer behavior. I will solve this problem with use Association Rules type of unsupervised learning technique that checks for the dependency of one data item on another data item.

    Introduction

    Association Rule is most used when you are planning to build association in different objects in a set. It works when you are planning to find frequent patterns in a transaction database. It can tell you what items do customers frequently buy together and it allows retailer to identify relationships between the items.

    An Example of Association Rules

    Assume there are 100 customers, 10 of them bought Computer Mouth, 9 bought Mat for Mouse and 8 bought both of them. - bought Computer Mouth => bought Mat for Mouse - support = P(Mouth & Mat) = 8/100 = 0.08 - confidence = support/P(Mat for Mouse) = 0.08/0.09 = 0.89 - lift = confidence/P(Computer Mouth) = 0.89/0.10 = 8.9 This just simple example. In practice, a rule needs the support of several hundred transactions, before it can be considered statistically significant, and datasets often contain thousands or millions of transactions.

    Strategy

    • Data Import
    • Data Understanding and Exploration
    • Transformation of the data – so that is ready to be consumed by the association rules algorithm
    • Running association rules
    • Exploring the rules generated
    • Filtering the generated rules
    • Visualization of Rule

    Dataset Description

    • File name: Assignment-1_Data
    • List name: retaildata
    • File format: . xlsx
    • Number of Row: 522065
    • Number of Attributes: 7

      • BillNo: 6-digit number assigned to each transaction. Nominal.
      • Itemname: Product name. Nominal.
      • Quantity: The quantities of each product per transaction. Numeric.
      • Date: The day and time when each transaction was generated. Numeric.
      • Price: Product price. Numeric.
      • CustomerID: 5-digit number assigned to each customer. Nominal.
      • Country: Name of the country where each customer resides. Nominal.

    imagehttps://user-images.githubusercontent.com/91852182/145270162-fc53e5a3-4ad1-4d06-b0e0-228aabcf6b70.png">

    Libraries in R

    First, we need to load required libraries. Shortly I describe all libraries.

    • arules - Provides the infrastructure for representing, manipulating and analyzing transaction data and patterns (frequent itemsets and association rules).
    • arulesViz - Extends package 'arules' with various visualization. techniques for association rules and item-sets. The package also includes several interactive visualizations for rule exploration.
    • tidyverse - The tidyverse is an opinionated collection of R packages designed for data science.
    • readxl - Read Excel Files in R.
    • plyr - Tools for Splitting, Applying and Combining Data.
    • ggplot2 - A system for 'declaratively' creating graphics, based on "The Grammar of Graphics". You provide the data, tell 'ggplot2' how to map variables to aesthetics, what graphical primitives to use, and it takes care of the details.
    • knitr - Dynamic Report generation in R.
    • magrittr- Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions.
    • dplyr - A fast, consistent tool for working with data frame like objects, both in memory and out of memory.
    • tidyverse - This package is designed to make it easy to install and load multiple 'tidyverse' packages in a single step.

    imagehttps://user-images.githubusercontent.com/91852182/145270210-49c8e1aa-9753-431b-a8d5-99601bc76cb5.png">

    Data Pre-processing

    Next, we need to upload Assignment-1_Data. xlsx to R to read the dataset.Now we can see our data in R.

    imagehttps://user-images.githubusercontent.com/91852182/145270229-514f0983-3bbb-4cd3-be64-980e92656a02.png"> imagehttps://user-images.githubusercontent.com/91852182/145270251-6f6f6472-8817-435c-a995-9bc4bfef10d1.png">

    After we will clear our data frame, will remove missing values.

    imagehttps://user-images.githubusercontent.com/91852182/145270286-05854e1a-2b6c-490e-ab30-9e99e731eacb.png">

    To apply Association Rule mining, we need to convert dataframe into transaction data to make all items that are bought together in one invoice will be in ...

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Share
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Email
Click to copy link
Link copied
Close
Cite
Guillaume Jacquemet; Minh-Son-Phan; Jean-Yves Tinevez (2024). Tracking focal adhesions with TrackMate and Weka - tutorial dataset 2 [Dataset]. https://data.niaid.nih.gov/resources?id=zenodo_5978939

Tracking focal adhesions with TrackMate and Weka - tutorial dataset 2

Explore at:
Dataset updated
Jul 17, 2024
Dataset provided by
Institut Pasteur
Authors
Guillaume Jacquemet; Minh-Son-Phan; Jean-Yves Tinevez
License

Attribution 4.0 (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/
License information was derived automatically

Description

This folder contains data used to illustrate the utility of Weka detector in TrackMate.

  • classifier.model: trained Weka classifier.
  • image data: human dermal microvascular blood endothelial cells expressing GFP-paxillin

More detail on using these files can be found here: https://imagej.net/plugins/trackmate/trackmate-weka.

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