Crowther_Nature_Files.zip This description pertains to the original download. Details on revised (newer) versions of the datasets are listed below. When more than one version of a file exists in Figshare, the original DOI will take users to the latest version, though each version technically has its own DOI. -- Two global maps (raster files) of tree density. These maps highlight how the number of trees varies across the world. One map was generated using biome-level models of tree density, and applied at the biome scale. The other map was generated using ecoregion-level models of tree density, and applied at the ecoregion scale. For this reason, transitions between biomes or between ecoregions may be unrealistically harsh, but large-scale estimates are robust (see Crowther et al 2015 and Glick et al 2016). At the outset, this study was intended to generate reliable estimates at broad spatial scales, which inherently comes at the cost of fine-scale precision. For this reason, country-scale (or larger) estimates are generally more robust than individual pixel-level estimates. Additionally, due to data limitations, estimates for Mangroves and Tropical coniferous forest (as identified by WWF and TNC) were generated using models constructed from Topical moist broadleaf forest data and Temperate coniferous forest data, respectively. Because we used ecological analogy, the estimates for these two biomes should be considered less reliable than those of other biomes . These two maps initially appeared in Crowther et al (2015), with the biome map being featured more prominently. Explicit publication of the data is associated with Glick et al (2016). As they are produced, updated versions of these datasets, as well as alternative formats, will be made available under Additional Versions (see below).

Methods: We collected over 420,000 ground-sources estimates of tree density from around the world. We then constructed linear regression models using vegetative, climatic, topographic, and anthropogenic variables to produce forest tree density estimates for all locations globally. All modeling was done in R. Mapping was done using R and ArcGIS 10.1.

Viewing Instructions: Load the files into an appropriate geographic information system (GIS). For the original download (ArcGIS geodatabase files), load the files into ArcGIS to view or export the data to other formats. Because these datasets are large and have a unique coordinate system that is not read by many GIS, we suggest loading them into an ArcGIS dataframe whose coordinate system matches that of the data (see File Format). For GeoTiff files (see Additional Versions), load them into any compatible GIS or image management program.

Comments: The original download provides a zipped folder that contains (1) an ArcGIS File Geodatabase (.gdb) containing one raster file for each of the two global models of tree density – one based on biomes and one based on ecoregions; (2) a layer file (.lyr) for each of the global models with the symbology used for each respective model in Crowther et al (2015); and an ArcGIS Map Document (.mxd) that contains the layers and symbology for each map in the paper. The data is delivered in the Goode homolosine interrupted projected coordinate system that was used to compute biome, ecoregion, and global estimates of the number and density of trees presented in Crowther et al (2015). To obtain maps like those presented in the official publication, raster files will need to be reprojected to the Eckert III projected coordinate system. Details on subsequent revisions and alternative file formats are list below under Additional Versions.----------

Additional Versions: Crowther_Nature_Files_Revision_01.zip contains tree density predictions for small islands that are not included in the data available in the original dataset. These predictions were not taken into consideration in production of maps and figures presented in Crowther et al (2015), with the exception of the values presented in Supplemental Table 2. The file structure follows that of the original data and includes both biome- and ecoregion-level models.

Crowther_Nature_Files_Revision_01_WGS84_GeoTiff.zip contains Revision_01 of the biome-level model, but stored in WGS84 and GeoTiff format. This file was produced by reprojecting the original Goode homolosine files to WGS84 using nearest neighbor resampling in ArcMap. All areal computations presented in the manuscript were computed using the Goode homolosine projection. This means that comparable computations made with projected versions of this WGS84 data are likely to differ (substantially at greater latitudes) as a product of the resampling. Included in this .zip file are the primary .tif and its visualization support files.

References:

Crowther, T. W., Glick, H. B., Covey, K. R., Bettigole, C., Maynard, D. S., Thomas, S. M., Smith, J. R., Hintler, G., Duguid, M. C., Amatulli, G., Tuanmu, M. N., Jetz, W., Salas, C., Stam, C., Piotto, D., Tavani, R., Green, S., Bruce, G., Williams, S. J., Wiser, S. K., Huber, M. O., Hengeveld, G. M., Nabuurs, G. J., Tikhonova, E., Borchardt, P., Li, C. F., Powrie, L. W., Fischer, M., Hemp, A., Homeier, J., Cho, P., Vibrans, A. C., Umunay, P. M., Piao, S. L., Rowe, C. W., Ashton, M. S., Crane, P. R., and Bradford, M. A. 2015. Mapping tree density at a global scale. Nature, 525(7568): 201-205. DOI: http://doi.org/10.1038/nature14967Glick, H. B., Bettigole, C. B., Maynard, D. S., Covey, K. R., Smith, J. R., and Crowther, T. W. 2016. Spatially explicit models of global tree density. Scientific Data, 3(160069), doi:10.1038/sdata.2016.69.

Abstract

The dataset is a geodatabase focusing on the distribution of freshwater fish species in Northern Greece. The study area encompasses various lakes and rivers within the regions of Thrace, Eastern, Central, and Western Macedonia, and Epirus. It classifies fish species into three categories based on their conservation status according to the IUCN Red List: Critically Endangered, Endangered, and Vulnerable. The data analysis reveals that the study area is characterized by high fish diversity, particularly in certain ecosystems such as the Evros River, Strymonas River, Aliakmonas River, Axios River, Volvi Lake, Nestos River, and Prespa Lake. These ecosystems serve as important habitats for various fish species. Mapping of the dataset shows the geographic distribution of threatened fish species, indicating that Northern Greece is a hotspot for species facing extinction risks. Overall, the dataset provides valuable insights for researchers, policymakers, and conservationists in understanding the status of fish fauna in Northern Greece and developing strategies for the protection and preservation of these important ecosystems.

Methods

Data Collection: The dataset was collected through a combination of field surveys, literature reviews, and the compilation of existing data from various reliable sources. Here's an overview of how the dataset was collected and processed:

Freshwater Fishes and Lampreys of Greece: An Annotated Checklist

The Red Book of Endangered Animals of Greece

The "Red List of Threatened Species"

The study "Monitoring and Evaluation of the Conservation Status of Fish Fauna Species of Community Interest in Greece"

The international online fish database FishBase

Data Digitization and Georeferencing: To create a comprehensive database, we digitized and georeferenced the collected data from various sources. This involved converting information from papers, reports, and surveys into digital formats and associating them with specific geographic coordinates. Georeferencing allowed us to map the distribution of fish species within the study area accurately.

Data Integration: The digitized and georeferenced data were then integrated into a unified geodatabase. The geodatabase is a central repository that contains both spatial and descriptive data, facilitating further analysis and interpretation of the dataset.

Data Analysis: We analyzed the collected data to assess the distribution of fish species in Northern Greece, evaluate their conservation status according to the IUCN Red List categories, and identify the threats they face in their respective ecosystems. The analysis involved spatial mapping to visualize the distribution patterns of threatened fish species.

Data Validation: To ensure the accuracy and reliability of the dataset, we cross-referenced the information from different sources and validated it against known facts about the species and their habitats. This process helped to eliminate any discrepancies or errors in the dataset.

Interpretation and Findings: Finally, we interpreted the analyzed data and derived key findings about the diversity and conservation status of freshwater fish species in Northern Greece. The results were presented in the research paper, along with maps and visualizations to communicate the spatial patterns effectively.

Overall, the dataset represents a comprehensive and well-processed collection of information about fish fauna in the study area. It combines both spatial and descriptive data, providing valuable insights for understanding the distribution and conservation needs of freshwater fish populations in Northern Greece.

Usage notes

The data included with the submission is stored in a geodatabase format, specifically an ESRI Geodatabase (.gdb). A geodatabase is a container that can hold various types of geospatial data, including feature classes, attribute tables, and raster datasets. It provides a structured and organized way to store and manage geographic information.

To open and work with the geodatabase, you will need GIS software that supports ESRI Geodatabase formats. The primary software for accessing and manipulating ESRI Geodatabases is ESRI ArcGIS, which is a proprietary GIS software suite. However, there are open-source alternatives available that can also work with Geodatabase files.

Open-source software such as QGIS has support for reading and interacting with Geodatabase files. By using QGIS, you can access the data stored in the geodatabase and perform various geospatial analyses and visualizations. QGIS is a powerful and widely used open-source Geographic Information System that provides similar functionality to ESRI ArcGIS.

For tabular data within the geodatabase, you can export the tables as CSV files and open them with software like Microsoft Excel or the open-source alternative, LibreOffice Calc, for further analysis and manipulation.

Overall, the data provided in the submission is in a geodatabase format, and you can use ESRI ArcGIS or open-source alternatives like QGIS to access and work with the geospatial data it contains.

The Unpublished Digital Geologic Map of Chickasaw National Recreation Area and Vicinity, Oklahoma is composed of GIS data layers and GIS tables in a 10.0 file geodatabase (chic_geology.gdb), a 10.0 ArcMap (.MXD) map document (chic_geology.mxd), and individual 10.0 layer (.LYR) files for each GIS data layer, an ancillary map information (.PDF) document (chic_geology.pdf) which contains source map unit descriptions, as well as other source map text, figures and tables, metadata in FGDC text (.TXT) and FAQ (.HTML) formats, and a GIS readme file (chic_gis_readme.pdf). Please read the chic_gis_readme.pdf for information pertaining to the proper extraction of the file geodatabase and other map files. To request GIS data in ESRI 10.0 shapefile format contact Stephanie O’Meara (stephanie_o’meara@colostate.edu; see contact information below). The data is also available as a 2.2 KMZ/KML file for use in Google Earth, however, this format version of the map is limited in data layers presented and in access to GRI ancillary table information. Google Earth software is available for free at: http://www.google.com/earth/index.html. Users are encouraged to only use the Google Earth data for basic visualization, and to use the GIS data for any type of data analysis or investigation. The data were completed as a component of the Geologic Resources Inventory (GRI) program, a National Park Service (NPS) Inventory and Monitoring (I&M) Division funded program that is administered by the NPS Geologic Resources Division (GRD). Source geologic maps and data used to complete this GRI digital dataset were provided by the following: U.S. Geological Survey. Detailed information concerning the sources used and their contribution the GRI product are listed in the Source Citation section(s) of this metadata record (chic_metadata_faq.html; available at http://nrdata.nps.gov/geology/gri_data/gis/chic/chic_metadata_faq.html). Users of this data are cautioned about the locational accuracy of features within this dataset. Based on the source map scale of 1:24,000 and United States National Map Accuracy Standards features are within (horizontally) 12.2 meters or 40 feet of their actual location as presented by this dataset. Users of this data should thus not assume the location of features is exactly where they are portrayed in Google Earth, ArcGIS or other software used to display this dataset. All GIS and ancillary tables were produced as per the NPS GRI Geology-GIS Geodatabase Data Model v. 2.1. (available at: http://science.nature.nps.gov/im/inventory/geology/GeologyGISDataModel.cfm). The GIS data projection is NAD83, UTM Zone 14N, however, for the KML/KMZ format the data is projected upon export to WGS84 Geographic, the native coordinate system used by Google Earth. The data is within the area of interest of Chickasaw National Recreation Area.

The Unpublished Digital Geologic-GIS Map of Moores Creek National Battlefield, North Carolina is composed of GIS data layers and GIS tables in a 10.1 file geodatabase (mocr_geology.gdb), a 10.1 ArcMap (.mxd) map document (mocr_geology.mxd), individual 10.1 layer (.lyr) files for each GIS data layer, an ancillary map information document (mocr_geology.pdf) which contains source map unit descriptions, as well as other source map text, figures and tables, metadata in FGDC text (.txt) and FAQ (.pdf) formats, and a GIS readme file (mocr_geology_gis_readme.pdf). Please read the mocr_geology_gis_readme.pdf for information pertaining to the proper extraction of the file geodatabase and other map files. To request GIS data in ESRI 10.1 shapefile format contact Stephanie O'Meara (stephanie.omeara@colostate.edu; see contact information below). The data is also available as a 2.2 KMZ/KML file for use in Google Earth, however, this format version of the map is limited in data layers presented and in access to GRI ancillary table information. Google Earth software is available for free at: http://www.google.com/earth/index.html. Users are encouraged to only use the Google Earth data for basic visualization, and to use the GIS data for any type of data analysis or investigation. The data were completed as a component of the Geologic Resources Inventory (GRI) program, a National Park Service (NPS) Inventory and Monitoring (I&M) Division funded program that is administered by the NPS Geologic Resources Division (GRD). Source geologic maps and data used to complete this GRI digital dataset were provided by the following: U.S. Geological Survey. Detailed information concerning the sources used and their contribution the GRI product are listed in the Source Citation section(s) of this metadata record (mocr_geology_metadata.txt or mocr_geology_metadata_faq.pdf). Users of this data are cautioned about the locational accuracy of features within this dataset. Based on the source map scale of 1:250,000 and United States National Map Accuracy Standards features are within (horizontally) 127 meters or 416.7 feet of their actual location as presented by this dataset. Users of this data should thus not assume the location of features is exactly where they are portrayed in Google Earth, ArcGIS or other software used to display this dataset. All GIS and ancillary tables were produced as per the NPS GRI Geology-GIS Geodatabase Data Model v. 2.3. (available at: https://www.nps.gov/articles/gri-geodatabase-model.htm). The GIS data projection is NAD83, UTM Zone 17N, however, for the KML/KMZ format the data is projected upon export to WGS84 Geographic, the native coordinate system used by Google Earth. The data is within the area of interest of Moores Creek National Battlefield.

This geodatabase reflects the U.S. Geological Survey’s (USGS) ongoing commitment to its mission of understanding the nature and distribution of global mineral commodity supply chains by updating and publishing the georeferenced locations of mineral commodity production and processing facilities, mineral exploration and development sites, and mineral commodity exporting ports in Africa. The geodatabase and geospatial data layers serve to create a new geographic information product in the form of a geospatial portable document format (PDF) map. The geodatabase contains data layers from USGS, foreign governmental, and open-source sources as follows: (1) mineral production and processing facilities, (2) mineral exploration and development sites, (3) mineral occurrence sites and deposits, (4) undiscovered mineral resource tracts for Gabon and Mauritania, (5) undiscovered mineral resource tracts for potash, platinum-group elements, and copper, (6) coal occurrence areas, (7) electric power generating facilities, (8) electric power transmission lines, (9) liquefied natural gas terminals, (10) oil and gas pipelines, (11) undiscovered, technically recoverable conventional and continuous hydrocarbon resources (by USGS geologic/petroleum province), (12) cumulative production, and recoverable conventional resources (by oil- and gas-producing nation), (13) major mineral exporting maritime ports, (14) railroads, (15) major roads, (16) major cities, (17) major lakes, (18) major river systems, (19) first-level administrative division (ADM1) boundaries for all countries in Africa, and (20) international boundaries for all countries in Africa.